PAR1�:�L���2�JF � �* ! � � 9 e � � v 8� � � pyK (RL �D �: � �  ; 7 /< S "" G �# � 4 � =6 �  hj- s+ %-n) u n � � p� �= 0�Q #$ �1 <-H�-8_7 � � . X� (! � R! (� 8� �P-`Y a @ 0j P, �U \-@+ � (� h� �\-�� 0a-Xy �� (V � PT �- �-�� @.8 �-(-�, � H�   �Mx� U M� `B * �� �M�E 8�N DO L �7-��-�� p23 (�D ,P  0�-�� � �H-��mx� ��-(� Q 0M�:-8 �( pe  7 � �� � m� 8�-�8 & M� �� �� �� ? ��-�9M �V PD-�� x> � �= � �� m� ��S J 0�-��-x-�JG (� M@�-�� �G �\ �� X= � �M�� yM(� �#M(r �n�����& 0�X�-�o ��R �xmxZ r-`�? � pJW Y F x-8l hb (�-x�X 0Mp� `6�@ �5 (b��'M��Mh� �H (�-p� �mXd � X-��  � �m 8m�o +-��F 8hM��m�~ � H� hI � K �H H� X/-X�M��mCM�[ 80M�1 ��-� px X� 8f � X� < �� �I  X��8 ��m�-��T 05-�M�g- ;MH�m� � 0� ��MxCM P�-8m� �� �M���T-��M�:��IM��-H�-�} @XM��mX� �2 (v �o �q 0� -�� `���� ��mX�4 �o ! � 8; Hڍ��H2M`�-C �T P�-X�m@���" xw���-��m��M Z - 8�-�� �N-P (��<��M �� u @X ? p@ S--H �1M��-� �T-� �:��2M� (< �� (� � � ��X�MsmH �(� P��h� �a �� ��M`= `Z-��-8�m(�� !-�� ��-����� �-| �L  �hMP6 �h M�J , ; �-(�  �8 �+ � �TM�K��-� @A 8L �jm� � � P�P `M0-`9 <��XMi�@  ��@-H�m����7 (j `��(�m�ZM�� p�-p� 8 �Pm`� H���MP��? c�8 4MHpͨ�Mp� � �� �� � �M��-xm�cm�k  U ��-�� � � N 8V \ 1�`�-(�)P'm0 �����MX? �, �I 8�mQM7 ��m��-p� p2-��mp� G� �n �E  �� @�mH� �-�-��g\ 0 ��M�M��� <�R� � ,�Z6�(Z6���� �P��: ��gߠn��-h�`���&N$@RZ�F���F�C`'��H��'<:^��`(n?*�'@M'Le ���q� Ѱ�'����1a ep��� 0  R! " #@ "@ #0T 20 4  @ D 0# 6"2 &�65 AnswerCount�� � &�-&�, ( ,草��EL� ��D�

The difference between�t force-fields is not going to be major, iththe side steps which are.

WhenIf you- startb�from a SMILES string, optimisation is a must obviously. c2TusQ4a 3D conformer `�PubChem or even an actual sub-1 Å crystal structure �CSDF� nice!5gsistenc��ich�1�MMF94!B0a solid choic.8RDkit o!�s /�(7��AD 1994) and UFF�� Universal�}u1.�|. A��latter has some extra features, such asE� kick!�A�bucket aoms th ren'tA� r us)�spects. A Draw9{2�)�IIRC,YMS�is very old. g16 in Gaussian (paid software) usesLElectrostatic Model,mC4is polarisable� willA, ve pa/$al chargessaI�way (i�I'll geta�ina5Dinute). OpenBabel � �under�0hood. You cani#m�,e with macroU^! ceE0=�AMBER�CHARMM.u�Giau%�!�AutoDock �a flexi�ligAu it should%�mItoo m%� nywa6oat else?ytcdcdoe��requirea�)�4s by virtue of�>�b�Ress (�sampler S,rototorsions!`Pther programs might iVy� rigid �0s (e.g. Fred)��th &4a mixed approa�Xnd?a� library!� speed ORosetta e_� ). C� de�ityAk��Lly a bigger issue asjy: only sl�ly",torted, ofteM2l!*hthan kB (0.6 kcal/mol), may%�be-HdYa�thi�at messe|ingŏ�A incorrect!iton��v.�A�p!� nate�  gE� pH, RDKit#not. Not� �fo!_A�s E��drug screens (cf. Lipinski rule), but!P:n���T@strates. However,!AF�einA�is �nta� to make s�{acidiceL(basic resid!�E�%lyL�d+ea4histidine haves16tauto�—A�e�8tools, c.f. MOE��a% do�buta*fa�+ bestY�is read!�up onp$mechanism. p%� next-�is5�,dodgy GasteiA�Marsili>�5��!nu�4 (a'most o�h full/hybrid physics-based a�q�),>h%0important: af�� all PDBQTŎa Q�`i: ��L! For prepare_��4.pyVerdict� b� � ia�atA��1� ��� , handles)�pl� $mats inclue�E�a�e!,L�慚�}pH 7,!N� -�F�) si�it!�4nfab algorithm�~ good,%�n�her��A6))� �"to run BQ |github.com/jenniferlu717/Brackenn@ #� `AB$Kraken2 re�Dajpu� estimŐbundan� p> P�T¡�a number� methods. < 're d� DE,E�eS8ComBatSeq, SVAsRUVBUSseq� U 0also try Z-scAbnormaliz�td( ��9!�do_ qiexplici�m� �'*q4 lengthՇ!`res~ ! e$(gene across�ples;a!n,:.!#-in :� �e`ed� &.x. O?t���bee$ n%�! Us,BWt6�m�� valu1E�Vi� $e "siA��  . Ok� look� volu� � ��Ced easy,Y !2ed�)� n5 �U-. �;�fi፥�Wu I�as� !(c��rn� boWI�.As � your �a� fun�hav�u� 6cIlluminaM � eva� ���bef$�4%L%���r mitig�it�first�e1a�*e� i�"�e. Mayb��U �$ll. To fig%?%2�t1|do)��oN �iQwhyw!!�:|��ala4y suggested. IM�lot w�b�y!rEe w �9� clusJtog)by1� typ� stead�b �bi�ny!1re��� . R&I"� a�)aA� 'c�%$ ixyUI !!observ�� X wl B�sY!FenM��"A.��,sk 1G�{ioned:�� <

RaA g!ze:�ma s� �hm Yfbe @�B t peo� P !=lib�paQ1ex�4^�倭Ms wz d�at��mo�s, etc ��!I-' k��SEqat�sensitii9run� ��! ��rum . D,A�A�e �l�ng���. � �f trim% <�wn - ���m� . Or�af��峁�!Sdesignan���DE/)�)�p6H do any�!�i�ta  c�>ofq-� a del -r �� N�an�f�f/Bun.+, �.!  rol; %�HiSeq��! treamon NovaA�e'� a lo�` � way,�tFbe honowar�i�9r�}y N~ mea��d��J2 level -�!�V er!W ��� doA�� �aP!�5�!�.w"mY�)�)�It seem�Ohsu4vcgs�cif�dhe9 id�sex ch�) _

B� *�� /canvas/ s/89r� ��H %Y��a�E$exN�)��# Welc� to B6� �F��ofAm � �>b�k� � commun si��pur� a qu�on�Upythono �ming. I�A�t�ime�%  h�toFnV/ flowi">SjOve%#a)��Mlik� rece� help�eF5�2  new�� �is G!0 � �0. Let's break!upF dGDhappe��ina�r�-�:-��>lang-p�$ettyprint-! ride">�#J def�y� i� ��hais� key�U��their H . 8$_eg1 = { .4 A  :[1,2,3]," # Key 'A' Qa M!�Ist -NPBP 1,22,33] PBjP- } �now1a%� vari� 'val1' � is #� �of!�> �?Bl.�C=1[ �- ]�M|���F�,*be7aEand #I�E d�t�e {� #A,�wor0�ɡ�E�wr!itE� so # Z�. r(100)%aA�� �AaD��o-?.=6�2k-� of 'q!�"&%7 t u[�_As��PseFq  (I)& skip 2")�'...!�!?st� xE���in�~�h�#=����  # !rei�!6xM�� E�A{%qYs tot�0 �o� r=y #"Z case,Aӡ�a?� #�h!�s madg �� =a�( 2, 3, 100]F�JP#� umAup�e�� ��nDM, imag��e�!� link6&��!� WA <� ia�� :�F*�0) Q�:� [*� T.�rdisconn���ɓt] Answ�$@J438383,��ve>�сX ent:r�B>" � %@inJ .bim{��bablyLR ��RSIDs ei�) Ta�� %! p> �"t��"�,&��h: �al "2on� {0cells (%mito,7  nagroA[orig.i�,...)�e���-kDseuratObject@meta.�1� I�4.csv(V/,��./ _HG3 ) R-�ump�ri A�a%b)�[ he� @osmoc !is�built�N x"�� interaca � (z�.%$graph_![ _res�ion��mn_rD�I persoxw f*$o��w1S t�,�DII� � on�f I:�B%�E�e 'vNcen6P� E�my �SE<;�'A�e cess�Z"\ load tidy�&&� E#(�Tc� q ID � tibble(A� ID =�!�s(pbmc),1IA�  ) %>%  E���,�, �8today's date )_A�$ = s9 f(I�I_mapp�_%sY�4, Sys.Date())):��A� E�saD��%MAoe�$I�_4Qow�2*&���-� O)�<�" �&E�A$�� I�-Z Fq�N%$ NOTE��:�FRFindC��on*[ SNN ess,#&ty}s*"�p� m [L � �v� E�^ !>� >J�e �YsX䥎upASdAql�$t�8��d _V�5a�"k, l3 sa��"h+!fiNeighbo2j� }RN"asW(default� ).
1�i ;JiX %� = RNA_snniKQ�Yd9�=�z�%� �5�!lin p-� i_G�x

E& %0.HIJaa�m�Ya CSVB�}<- e�[�"��( described��O ��j $ata.frame O.dfH- J� ��s�M�) ����( .df,U$path.of.th.���>�^�.HVi man�+y$semi- ,n�&) .)%!u���eU�$�s� w�b�Cact��if deal)Ł%Nr��tdbe enx"�#e�a�to-� ol>

  • G�+ɭ(co��$criptsE���g�A�$�(r`am S=� }��i button nR�top �p>BPi.s�,4.net/FYLSC.pngnCbq~� clic_"� ix͂� e95��i�'rrespo�$ein"y~u25Ur�EfeRexpan��)�>'X��t=-�A=/h2�'��Jse�.MfT!Fl� IDM_so��a1vEn �rq.htoi ���ktoXx�rE�r�1 �V�%!ed>uM�selct.� ![�-le�i�`�$1UJwv�$E�$ϊ�>)A��tlefP  1}a�:N�1opy/pe, th�)in� t�,��1-r< ENSP0 369497.3 499438.2505508.1439902.514856.643489:H 6251.64995706631626 49926Zl5.1: $

    Now, goaSB��"ei� %biomart/�view/cc1e3843edd9549a4fb578f900d88d23n�BioMart��E�r�$e��%�%� SeM1� Gene�d���-M��IJHuman.11�~�SgWpW�Ee-CD0hot>�Th�%�d �Filter�(1�#en !! + (2),6uI)exter��5�7s�e$,[Max 500 adv�-]L3L/o pP��s� ID(s)��YioR  (4 �qkY ��x(5"�~�rDGmI��E�� Nextq!)Attrib�' 5��� &SQ�%2��iDwcj��E��� f[&:�R�%�M�\ �*L n fastam �0�26Fx3�E�I'm afr�7� A.oo _tI$��a� I po$6m�:FKe bin.W.NZycAmgDnhVR9�5"���; (.�se2�tb r fav7/e a) e�1d5�|)� �2. } , IH���V2$bi.ac.uk/TK4/msa/� alor�( %Ω�d7Kny � ��N&fewie&A~BmZap9�XEEX�=?gBRCA2" >�1�M*���.9�iu/us�)� (�)Fv%�Q]GhHeG9CJr]er*�.9�O#a pap��triu,o�b,I�problemE �S�-e-A�: M�3N%� �E^of �?Iso܍X RP�=+6508070r\qO��QA���{ee�#�(l,8%k!x��iEnota��+ai�l�g�`)�r> 2023F���10166558�9R5� � I am%�8E;k�2/ 2���% similC8&i�"

    U*1to��(OTUs/ESVs I!G_�(�a�8 we�erk.�T& ,"�e����,J#G/techn error�}E�#"�;n5eF� benjjneb.&$io/dada2r�"!jmB,academic.oup�Wgigasci� ].L/9/12/giaa135/601125r�2s snak��Bx,forum.qiime2 t/%-we-prw$-nanopore-7-�8- 0/16156/4n�*�@��u9�%9�= %�adapter/�(�#/denoi�A%5�Q��#!��#I&knZ4taxonomic catel6es|;eday�Ub0�B�re]d�d�;ncZs�)elp��"M �<w well{<u�G.L5&,B �a U T� ���eneP> TMM/A|h may; �!*�ASV / E-)"�0#!/bin/bash s%��"iv�/e�$2-2018.8 !� item�`ls */*.qza`)&do%=`echo $14| cut -d\/ -f1 ,]��s�ort --i�-3 v�8W --ouf9 1@EXPORTS-GTDB-tax/�8��mvF%vg;/zD- ��FG.l#qrmdirJ-W � ~P11_ANT-28-5-SPA_seqs_��ied_aga�_�H_r86.1_807F-1050R_p�3 r_sliced/7c�!�~C �,-i '1c#OTUID=(�5y 0-�ce'F�),.tsv #Tutor�=� : � JiexA(ing-and-mod��-!})�s-e-g-�"ng!��y-a�A�s/3630B�B%*SI�M��Wstem=`g!�M�%� +5+ -"!-i��oF�Q;x.H�p!��1�p-fpFJ.o --sc-s�0� ��yMw>�F6� ��"co�$�.ts�to- �,er-c&:���(�!Cov$Y2e circum�+c�0�]�@��mv(�8l9t"%(/n� ��Y �1�V`! %tE�>jF��9 merg�#Flitr=�s2*Q,��� 3 on3M8h: ks � both2="�%%AC�e(s��Ky0 g<�Fs� u�N6!f� (a r�occur�)�9Ha5��0r�9K7Il+ e".A\R�)�o->L�tB G ?f /:�As&E,}A�"�5��D em>d�H��:J!�'!�IeV l ��� Uni`�associ��E (a�-��"!Z ID�6� *s,�inp�record�Ee�C�53sa5�|�,PA7'a5��(2!stN ly� r Fi6�.&[G)3� � �sB aB�,E each6}{�B" � � �]� Choo!>9E"wa�5i�  a)�E nAZi�1&i$"�0S���H%�no[.*�)AJ pno"Lof#14 ]9�1q>� d gua�ng r/��i�7%}. P �emjL,Jlik�y ��>�*"�*�+)%p ha{!er�cs24Hfur!�aGsE�#9�40 %�g?H�M+�;Dhigher eukaryotes):�&a�5ach!$) W�@e a=�MhF@xFU>�<goI�g�" tifi�zoz,a "�"f�3"("� �=%So~)�*�:,K�y�(: ,�a �e�g_eI2� �.��_�e�Ij�4Re"AGmy;)�B� �:J�BQ�(s/65595/how��,determine-th�E� -uni�-U�-�-�i-a-�-of. /65606#%22�%20tiBP%20inhe%20Bi�;%20se�3%22"> 4 2!�� ,1��Gq  !/��a�I}Me�@ �pe� "-�"9���,a�4I6� ������K�fry��jl8a�>;EX&;&i:;G:/�-w/G_)�sn�� �I.G.v ��M ��bD PL3 kept�eb�qAf�S�):�  )‘��(ci�)B�’��Ghe�� ��rh j ‘S�3N' s’�sSNak�/( alphanumerL �A��.Ob)�HA��! ‘de)o’),�3‘m2’B� �a�)NllZK!� 1�wh!3!�"�U�mx c"� as �'5arV�)1�k: P29358vche�� 6�B P68250�� 1 R6� ��Both re�!oBfRn�uK-KF� _QW�+�2 mean�CpY.D��Z9�Ka,F<of�� as o&�$=��("�+� ��C� "� ewed:yes"��yu9query,�= ;���bh ID }/,6�^�up�0a� C �91Col-0 �DDRy� ledg� �dar�fZ Arabidops4`Na eco�B,�'A� easi}>�-�0�qVn7y2 down�0m���#�% nucleot>(N!k"ft!Lftp�$genomes�fpub�I(-46/plants/} /a�_th �/cdna/n�&)J6 !`eC�S�S���Z�pepr��I�@ HRef^@q�"��_sM�Bn NCBI home�5*�F\/.II�)�t. C&h+e '-Data'#a,rm" box%xaz��i�U��!���! � �(s/?acc=GCF_�'01735.r�%�F%�al&� U1~as�*� �*�2�blue 'Dm1, unchec -;% GFF3�i?�;, +R+�-��Q�FASTA.4!.8&u�!> ,�4��P�\F m {�inLu8teres-��ie� �Vason...!��  sd#atd�6�PqA� hand"�Y3a1s�H��: �<�Fhib�� "?X"L �/v�@!. ��U /bi,U�wac&A� �\�Vadd�Uiet�B{it� ac$%it degrac-.0�W$it fluores�6-mark@�0not, ig�]talfK�i�O_Cr�^�SuZ0> c C_u�^��?"0lixA&�^. coOorOany6a2Y (itself�h \ ogue(R�Bv;9 abolite bTEZ�0�;' site?=�:�1 cyto�C,e P450 enzym`!�1ace��' u= deep%�is guar!�b�Zflappy �J,�of` �(% g 82�AIregarU"s5�YD;�%�'at"'��o-[�$waacoordi!&eCY�� �� � NADPH/FAD!la.  ,=TW2-U"� 1J�c|J of iuF8chemistry? I.e. alyt, riadiZ��Yn��p E)]Vt�^t.(1)M}/A�E�MJ�>�$Wet lab: A��t$ ocQ�mW �<�}a���7�e�Ac�-� ZE(t���hA� s. A(h� MPa�ex�Gs?TDps,��ZC lem�nD)��� �E�s�IA stagq<4)�-��.u`g #avoid-mr?H soQ`i�o 5w�W![(�^I�%ot��%mC�<!F ng).�)-�li �U6��1� okay1�vaNOly���Hs? Dopa decarboxyla�(!Ts)Ua PLPM�,C +V�X2�� Q� Oal�>�{ A���^t�F%pyr9]>K�a�]$ighforward)�%7��"�LreJ��.99A\h].�o f�cc^'se^a�fiv�9B)�a[ >�2rE�\G ���-o (kb ea�^ hz3ndge�9olubl�9I�m�p>A min��NL!/��&&nobody�a!�W!��et���haGbe�1behinfOdu��5!hcloakE�dagger)�A�% SGC&�[�� enab�7�U)[RE a�gcb tep]n .W :7<�IaH�Gfu�d�anyQ.�Physi2pw#wa�HsAAIuHl!c|R. But �'do!���E�5�ua�~*� c�2Ŧs�7�Bs becaa� �� ����\is�I-*�grbO�wA��e"oA��FroH\�� t�.@E��t� )_A.��3M�h2>~cA��Pp>Last'Z�#a��J��QI�+s(aap+[Qba�%e\:������ hard:abac��Xlan�&racem��&_R holy`>i�$a�l�u�bg�+%�Fa�:>d"�;�S"ship!^a� tle"��c2JA�u�Cgiva�Y�=6NeAddenda1IT: li>AB�� cid-!-�Xe"t?M  r�u�Za!���) (G)��n���&�gepoxyd�A�F�eŦ�cɭ��lex sm�8�f�, re� �A�c�K"- y�V2�+6�,M6 ng%un irrwZsi�fM ion.'re�`pet�Q or��f'mh�Fi�Mut�eG,TEtu�Z� �^x%$�]"�ewor��La'��ݓ�a"n s. �F Para� s ( "�?�� orgd):%�a�ϭ�� 1)~!�d�4Z)29  gmm�Nh )�kinas>6��`�Vn Z�Y�Yaa�" ���z ��nG !ƥ��ch a& ��� O�easy=MH!� Z(Qg�-)�_1k!�t es A (A)iyrf��Bh�6�bdK���#�� li>T> . Ipm� �uO llen<��9 ��Q� p%0!e�!�"��Po#of6aUm�m�� -�g�S� �+j a��fis[� �i� nd �d(ublish stud!.a�.X�6ns empi�����2i�eI#%��a�a� 5H�)074{ utho�aBO0robert-haas.g^b$io/gravis-�+r| (Ie�open-�)���*͟�Bw`�a in P�Q%�a�m draw "W:�NetaX�*��!6[��p�'i�,�^l�H��(,Un�@N+)k, � curv���d�O�E i�"pertie* �B�C�*:9l h �izeaI� (a Jupya�S2book:F=36DA 8lTu��4�4E�4e!� �5�p!�82�4��?.�Y!��"*Ja|!]A�G_nx. s(�=True):C+color"�Eblack�$w]Ft =J[2]�M  (�Rif,|D 0 ]6ared 7_el8ltj8�.9dg�c ] = r `2'penwidth* abs( �JS%d�l3e�Ia�e�| ��Cxa2yg�17E�3

    D$Q�onA,rq� b+5�EtIWt6f-W ime.�.6C�D��% viz./%�L!��cth< ��� Hurr�Y#{�Xa ^k`�'*cb0 new BLASTw��n�1 (v5)`@NGMŻ blast+��G$s >= 2.8.0 �!&��a�o*fl# ex5��a�\ll` � , i�g�$, "S� �on [es+Z� Specs+N�obt1h�Pw%lnZz�!)� get_�$_taxids.sh�: rR# -�' terox ales��n!5� �{��J�;mB#%�/db/v5 dbv5.pdf��R���$Edit:
    �&�2%�ID%� s lo���%G�%omy �"YF���<pmenzel/@-p#subtreen� #�Qyb.�iv*�rI��� i�&�w�&xenviro@:al,un�q taxaI���k�use RfS�:�u�PwebAfa 8 :Q�:@://bradleyboehmke*� 2015e7sc N-h�0�O5:�]!eE'� &6lpb] effi� * s�Cer���5*Lso&la�bl�+� !L�!Qa��4�r�R�$ddo1m �j&W4/adRN٣�-^>� fi)�  1A0�jng��1s u_filt_t�eL-�`. (...Al.1�q('6id'�Bkz sAsF�` F) norm_@gs�Q, ';` ep = ',',D�::k �to� nEv�4 � %in%�F) J2 $ %$ �e[�, ] non KF�[!.3 �M)vn, ' ered MN', �0 = F, ro�mme%~, 54GN S6�%kn-�[��ZB beAe��4� rLke mil� �8+yasol�s�S�L-_provinYf�asiD R"��.��3%�e�m�a�w�c���e�st R���-�I 4s�f".�1B�a>gen> %� Zr�� &�/�!(a�>A�omJp4\Ii.�is�8 doma�1&�5#1�-%��5"g1B��.�*:$X � s/ /Y2t_h-�m<@%'B"_�_trackv�*&m�� h �@ !�� N?>��r�UP#40589_10090_bedv�H#=�S.ck)���&�1�*�rega@I��!��`Pif -��l�,ABA��� � i ri iviaDA(!;� a, bed�I+�-m�Tr� �J�A�e& A�&�%�u�e�0�:,�a��\*0(by deleU� L)><� . �&)D��6� v"l3u ��.�,�.>m5;$!�o ��<6�4SAy E- ��7Fy!��y spa�j8C(n 2) pairwise ondul�x;"�3Eka l\ i+�1�)2���iHre�GmE~� utEal��h4. E"`a�"�)Q k-tu�45PK�IN�)Why@I�s�nw�&E�!te��X?� e�hthCAR�� �*%' unsoD^bam�)'� wait uzu &�����*�mL. Index $r9#sh!�a.�*%$ T��X�s�%]�3"mdo -8at�u�biq�x�nfC� � bwaq�sa�g�H�|'t3' id �/.,c_'�� � C�^%:+5 hiteI�af6 b �\�new� 1f�w&#:$�!��8 �a)�er��&����y ?� =QuiF�;e�77 $REF_PATH�-� �h#  )hUs�[hw-x !!�E�o�A�E@n ip� debuu l�VI eralGadF�kvz2H-�W-p!8i Pn "��0r">��f ��� 6  BsOerN�%oc�A writӀA�4:vel�s�&v�D�z Hn�C= e"�h.n��?$ionM�J�Jbi��v vign�s�v /inst/doc 6&k � .���,�p.p)� �B1S�H;�$�� e| H�Yu�.�3@d `5ofu�|s�UIim�12 |bcRU\J6!�F�/fVlimmanV!�VDSSnTDSS�REBSeqnT! V�*�Xbayz[ "\� 6�2+�.ank�ll�j�O�y*2� pipe��0Ej=3^FId#٭al�e�at�u&v��(�!so�GC1�� Cz�[uz� �e�&kqsdiR,pl �~ job �J6�G1BB2��E¨2��H6� aBWC�uYuYE���I/An� �R ��y?�=l� !�"� ���� "�MM6;� ETraw&n~e&I�QK /�s�\ hundreT f�E� � * focuD � &�/,I "��g��log� nr�"��zscal�1qrݛ �N=�do� oxp�rz���x ���&�&�%�li>�aa non-hu�|�+vv1!�b yU�7V�=�� kruskal.A�] "@� iV a� hI� �bio���p/31049v}P ��Il MeSHa��%� >'>D�(p22N Concept Term hier$}��Zl�[ ynonymous�� <�>Pm��!r�oup6@{F:�9�|pt<:�)c.�G�ls,�K�LBlood-Br�Barri� e�(li>Hemato-E�halicF#:-F:�*�+A)se �F�U �!umbrell�&mG0"Bzmeshb..l��E4/ui?ui=D001812n� �-b�b�a>"I���6��. I/+.%! �dI�1KGMj���xg5 # ph3_'�U /cG�C2a $VCF&wer �S�7eld�2�]4 �"�r�` ##FORMAT=A�ID=SA,N%�,=4,Type=Inte/q� ion=� (�91)A^'�?&eles;��*!d f; 3(�r4)$ @,!�U{e�ing a�FsW/4�}��%f�%"7@-1Iac��� {EA~{MyWz�aQހ k�� i5q�}c��1��1)E,S�&KMbyM /MA�9�$CHROM POS�0 REF ALT QUALt$,FILTER INFO%�D TN21-116928 chr1�X6197766 rs2294714 T C 0.0 rs DP=1931;TI=NM_000983.3;GI=RPL22;FC=Silent;DC=c.13-10A!�DG;LO=INTRON;EXON=2sHGT:VF:AD:SB:SA:SP:S��0/1:0.483:999,932:883/1048:451/548,432/500:2:0.0 M��^^�^6>�i��<ǃɁor�'Abse���I�N��3M/A��/I�a �)��x+ f�X��Oq5.au�qd�Ll�V�/���bec2 g fr\36�N'�!*GJ. AR�?, �*&�3g folk��z"e�a��q@/"�e��T =� � hrou�g@�.s�Mn�J��"!g�%� ]�,�%&? !!:e~�(an&>�%| orA -G2A)�E;�!&J��"C�1'ˁZ e �maps� )��:N)bor Jo=|a?�� !�a E��$ ����4em>Dr. Wayne M��n,%���2OvI��ar� s hug��,A�o4ofƒ^1Ӑt�g^g4Ybct O'Re˒h�h3n.M  +aMit "(, w(�(��m�{VZ SE,&��@0q�� �nltk (5�al"��kit�6 �:Ak- � llelM!�JavAp&bio� (]�J) 62�i�{&�we�)� �2an ApDup%!SGoorP!45&%�fantas�<e�I��ec��� �c% LDR-�$p����>-s@le..JN�6�R� }�e�:r5���B�9� x!-�Q�bU>u�so& �� �Moff�Na��a�6��(aka ANCOVA,W"�)� A�-�v �>ala��XO�=i�f d - �)%I!�alln�4ah� !;p���E� �� �[so+G��N2��Y9;�6&=Zapu=n>!�Kontinuk w�-:�A�'�LyCYx�8 =an-J@9,��seq�v�[���-��:t�@9t zero{�&-��3 at�0a Poisson GLMWneg Rbiw^al$�yU�L[�vѕs�yionU���)-�2@!0hP*�&ilH�[-s,�Boe A?OA? }AV%�;�Z�����SQ%'d5do��a�mA1 P�Dd� )�!��Ad��uq}essarj5�wp>I'd ��� he)= "&E)�!��:"I�u�HopA�nQ �l�0 "YW�A�Essj!kper����i*JI�+Cer� a&�51�D�n�D�vooEr$go. DeSeq2eA&� >Y(UcG?� edB q2 >q7���8s�6a Q-Q|�[*.�A�!Y�� ��xiQFly��i��:)H2l'��tud�>6�!�6a�ceb�<�heaviw nv�@�C� 1��l��8���h^xASf5})�b�#ѓbfai!4 (Q-Q�#s�'yŲ�;��m�C�n2�*��66 B �@!fc�&�A�o!+1%�stuck��tast���S�E�} opinion5�H�mi��mL�A'�� �traԃ�ly!��R� A�� rپs:L!owԗ ���-��vr" *A "��&�FAQ:�-�*�.veg/hyph%^es/ /mrr��on-msr�?�WcEs,�-Woa!ʼnmm #$�.&� ��H<=AA��y:��o!�i��>er�7 +*�? R8L�/�y��ladu�,!���c(�ansi��1 sWC��� 4K$l�ga�f�\>�Ms�|$lE���4�+u�E+in� d�*unr sg"codon OR�-m�refb�De�Ka J�if/D<F�p�@�� iple��d�=U/�ki�� � ��k calc�s�� �ZC9�!���)�ex݆%�, ;��#%�ma �?ȤCF � a�C ac�3eՕ muscZ�H/ b��9�F(. MAKE SURE�d$e�"�9%�E�� ~4:a�a��Q�e"k � A� �� ,l�&����[&4�(�?� � (d]j���YI#fall E }S�$a.�to.�%s�ۥ�la"���'.bs EMBOSSͨ�(�=2ni|Ah]�9d �B/�f��I�)�ATG& aA sign̨PN=�e%�� ��}I�!n��a���u� wYal 3' enŪpin-JalUT1or�C�3�r� ed�Mof� �H�%Z�wKH=�T5P5<�k��&W/��! d�at/�}!��V�we4��X_�t�,e R�ll"� remod� (hop�hl �a�ߙ:7b�L��~L '3rd)� s:=�'{s� ��at" �er� �Dcer�7I rٙA�� � L7T�� ��t^N� �L�O%B��R� Z �#� ("\�*R�q�-*��I!]"�a$pea�r8J!�mo�,@ arti���Վ�U0. MoreA�5�"��W� �cpe�`ro� �2�. =�� ! �Cy? Wh�aR(�_n�9dekm�r"—�atiQA^� ]�+��ѳ�n�g���La�m�GAC� eLc�)� �Osa� #M�s�`to DNA�j#A� se �(!, fS�DNA) -+ (v�y, TF G�(�h3[Wre Tn5 jDNA�����ms)A� IGV.z�my� dy I�2�,ATAC-���H3k27Ac�b�-lG2"�iJnoE*�z� c� v���ane����"7I���&� ~cu ��a�-�t�[��3c�, FAM41eM ENSTC4 432963.1,461362635557.1I�����ᩡ�a5.TSS (�yZA-ToTSS)"�wM��!b%�Jf�#ouCTSS)Lu.�� G W}o�< w8s[Pf��-^���}�d�W �r�[}c�e@�[_%�~�?O� ! TF,U-&<����G!!�K!���qs�0t$]�if����=����MK7"�on-�_��i\ �3:  �5KHow�!"im�8A��\*i�"�(ai�E�d is. S����$Pat!,�z�f��s&�w��v/!@gk"�(��)X !ܱL�'�YqPd>��A$�an"D��x  (i-��X)^.<��B�old hg37B�Oliq�Y prior��8>}���̉RNA% !4)7���e�%�Y<[� ���"�%�L#HH�� Z�l!�aLTĞ���;���� 2�://f\$r.ucsd.edu /ngs/=�f͛��0���6�$d$�C�ng ChIP�� Tag D� I��'"Eqnt&��%0 rcM!eP� .plAw[a]!5t��o��W#�_�� !%  c6s�5 "Th�>!P.�agsC�� dO��i� cBeu% �o�n�+h�G �% >8=ag ��b� 4 R��vic�N�r��Eg7um by �f"-d +"��an"� 9�2r�$. %���� ���Vll�.(�Ec���a��o��� 18. �u �-I�bpu1��$.txt mm8 -� 400 -d MA{8phage-PU.1/ Bӏ  >�=E�6~ i�To�u�t;%l!�2Fm2�by�fA~�|��MMk!thm��G(��!‰ purr�: � M_arg^5 (.x�;���;*;� ��W�eR �� *ml� ile plu��og ��l/R� 2 y�*��%�<, i&�7$inner_join�. Q>  N �!V{ ���M�!Wn�EI�f%7NUv �yef�k�& >...63e�V+5Gf!�A����� as "ancho�i�f�"@0Xd �p$6?�,) ��&��J]ly5����38 %�9_of_BAf1m(x� 5d9�) , x)Qk%K�!F <�J"�r ����"��b'�hK�aNli ��#to� ry�7�a/����p�R��:3b e inE K�"�~� ��-�Rn �0 dس6+�[�I� (�t t"�~or8"Ѡ)� {�!�De'�0F+��G%�/�ס�2�9ho�OhBet�o ucla��Co�ion?P/Rv5$/WGCNA/faq��* FAQ��� 'b 5 (My)� h"�ou׋an��2| H?sH J\%�ŒGEO1=�4��2Y� ^<%ցN~ if�� q-ed5�6�p��)p�Ar� NvM$�M�6I��E�(a, b,��єS��m+q)M^ : ��2i' (aAedA s)Ds)&'A h���i cave�j teY � exacR#V �ed �A�o�2iM�Qs �%�! 1 aa"�c%�Ris� �p>S�4J�<&�+\+d EKNPLPSKETIEQEKQAGES 47.67  98486|86 sp|P20065|TYB4_MOUSE 2 KKTETQ�dnd-��x�@5lg�Q�ba�*�ir�a��!� x-axAc�`�6Dpep�e k!�)�)��=��/l)VA8od*: aver̓� cs$ kMSa�� y"{7�#j��wo2� E{- ��� i��OOuie%PBdQ��2� �Y삉�m;F@*"pj@</[�f��LongSho-�:l<��U8HKU-BAL/Clair3"jT "�`orr�0kishwarshafin�jpernZDeepVar�/-PEPPE$=)��S6%#o�AI&�>a��Xr+� �qa�9���%]�m+Na���%���_�laLzac_`A� vHB4r!�BJO�XAq7!�P~FAB + Sex + Age + TM,WBC + BM_per�gag�=�` �"'#Z��a�Rex=�d� ��f@)a���dcM���yN[ N.by�,�,�,�;BM"��OBF"r�u17336�u��-V&-7�m�-for-�-��AlE�� @ m�Ĭ�&EN�G9e�<�/n%dNN�"�d-�(GaN ��~5��G)�Qn%i@j keli,� �:: LRT)Q�RFa��E.�b�9]9m:�:)!:Y� �^�,;U`ub%�B�ee�[) �F���car��e�V6���! -P<6 sign�n'��)��ŁN�99�gi .MFAB.�2q)�x9�i�� � "Ab8� U�8 \�;!^Io�&� :���1I�q�!Z 2D�@�kha֩G"V*LRT!�%>*�)t�U�d5+-�o^ u=KA�re.�`ac��deP-j�Qn�{-�*Mia_t!�^r�ni'1wae�~&�A� br���v��E���a�6 g(),6�v�o�%*2 &* :pD!}5feW`@%��ng&�$!3�9�-C�/,3���Wt!aor� : lp�"T]%Q����� ��E��LptE�D���&�*Ls (ANOVA).�$A(B�.T��;I{i��QMmN�,B*�,�1�: deviDEVY(AScapMgAn3���iK��b��aI���A�mY2�2|Zwc�O|-0Q#%a%�o5o?��?LR%�!����8��:�����Gb��a*p}e�:���M�'pն7� ""Q� �{[��Ae}�,A�0�2\E-e|))Ex:�Mwup�!m�Ya��e�!*��Efe )(�B׳� ces)��Knr �h�r ��I��m"^pa.6l4!5n&� on:g�A��4CJW �)!��:�A� WaldE$�5dd8(es �3� &ysco"wTs (!, vs-6.� .EexA��%!��8i>cA�equ_Q0����q null hyp�B�x,lfcThresholdL �,er�#��%����e�0 mpan�5 AUrN�lb�E��( }`,s&�aU� )�V *��=LRT^ �qN&�$��Ja�0�|���Vs!�LRT��aV"q ]� �ZL$gAp�h��1�a2�P�Y� su)�nI�"� 2KJ/�!|z� 93643/E�� -�$o-vs-wald-�">Disc��o�% vs!m1O|TL;DR �)��� fJ�oɘ�K�1AzZ2ld";���I��Au#Fr!|&� ���Iua IK~J M<E�  D�/G�'sT"ndN ��5� )��!ri��� �~�!��a� 0�ub l hO.j�(�+to�"r�4�!��Z �D,��ub.Typ���m�);=, i�:� � a��! ,�!�&iV�&���/d^yp6OINi�( r�a�c�a��� � ��3ula�%���::4 �)7va �F��i�%�_,6&i�� ?&�es&1��4i�) lpedE��I�A�matrix!O8� of � g !K�H��� bl&�!� �s�TEto� Q ���y^��Z�!I<�N�i! liL�K�%6�iz<{D�!l9��� k� .)��K�i�nfteCI,a�0 E2�? � -�ȉ1!9F,!�9o�2%�1��Y�xst1�!�� M� �H2]su�B� akeC L���7�u��k�cE�l[N(f�PdS�P*uR%%&tRݴsguide.pvc�!'�'�Y�49.2E��+!�e� �1���+%Z�(&�0��,&B fakom�.(nŭ�re�mis� !�ims\x' ��O? � ����M�p4MH tssR0,�"q" seek0ke��oI�#H*91,- i�!�Q+>>�<*i6o�{o!Lz8 ny koofrB�r�A�-Eed�! A�Mb� p /�KC �- C*��/ ainq�r��I�zLiN~s-�2!�i7L!��i�Bxwindow0��be�78s�).<`�I9r)�x�~ e1st Exo .(&)13759.1/B2 on 1!l 1) 9ME >��� %"y�%�a%I�)^7a?5�Pe}3GeFle��!e��X �#:x*��(���a�4<�6��E�&��/��@ A]������ AD�[&��.!�!}n!K V@e+��no�� � H?6�Ifg�SA-K o F&��re�X�r �^b� mask�K�p global�e�5�)�b+n(!rt,i;�� i��!>! +�Dp")!F1AW!Xno�*els�=�)�I!�H��%o��{�qf1E�0r� iX0 BAM���*ro op�m�,�? FY�9q �� ?A�&-r!vA�1 a��re�Ge!�G��  li�4d� O[ �^ng!38)M} Oc frag��IY BTWE~!��e+!�Q%2bF�&��thrա��allj&�1�nd 180� �6�* lI$�)���lm[ �c2 ��%�%'�en�9t�i��L4%�.��;�)*Ra��}bad�t�=a!M�7S"K-�7upa��� ���Qmemory�8�6�UM�G&�Nd^e8 se���m?�C� whee��/*�*$ L� *������kv & z)ibamPEFM5Siz"�Ũ���)��&  ��{�d%�2�#m���n:eeA�b�<&N%"I���� � 1. aid,�&D �aX�Ju��e-#�a9l ��0=S��AE���"RPb��n�!�A��7eL8_00ru�A݁���;�#��!�T =(!�� ��q���`�:#D��D c-�K8PfnO�S. AlsoE=a�dF�$E1ba���6t0 ir� ast5�L��n�H Ŷfol�Q�f!VM �  u� 2�!e�I���+U�r�G�Dؑ� Aoe@/�!� �� ���ߡ!e y"��eGO*�mFig2b@��Ki3�E(_c['ak�y�YQ� . Each do�ae�m��5C]�2a%l!�`'M4�(�;a�� ��Qw9��$)� G a?0.���� ��� he��U�Ix+�H "Ws]az^"��&lB� I��'t1+D�+l�iJ=jw 0.46c' r�H� a KW�ȁ�0.001 ���2�& ��up.� ��s�*(@E$�6ummWe�Eu��KW = 1m0�u70��W��5li>5(= TK�6� ��Loo�� J�d���8NK���# �gg�02�@ Bt�S� �� = ".�_" �Ab���BEd!�>A�_an.B?1Ip!C: �4 orMK� �V�5"`l4�? Af��??�I54�)�jA<wei�eQ�?rg�TX�.>@9�S��,�Kg�Ep (m�aWh A�!� y). Uc��x���!�� *oL5�!Z� &1RO��my ��+� 5] "�9�}J�qw!ggpubr�v.k-w(ar-�ia0(mCMP ~ mHSC,)�= df1��i.= TRUE) @:�,A�[\"\Z} ��z3i�'z� est !�: !���b��oup .V�$p.%���p)�P"�seSs�.��1" �����cA��- a�5�k-�0�%a.gz5FFName=v� {f%%5}%o2�I=��ZTA��J� aVEX�� (A) JRcxt�C�go!o' d (B%l�Nreu�sr ��sm ��yop �L�n"�JaF�f���Lu � I�(&�gv�chaa�$H essf\�nW��C� A��G� C)�Ca�.9�,�:7ubf4wd��"C:�J_G_Q s_in_one_er"m���Icsetwd(wd2]��Tm� ��2 �q���z� cQ�� .&��BL�&�PE��Nwop$"� dfJU()�(�m1:lF3�zes)){ 0[[i]] 5� �z %[i]) }J�%A"{��YFz&�)H�U*��:p� map( �, ~.$�ID� #5s�.9�x �et�,(�) #appl�AI"�9 cu=!tiv�&M"o:dI _%iBqriGno�i3�rXYa1"H di")�o9�3WQa�y $K$�?ym�� �]s. Unec�8�d a bu�t~Ul Lly��ir M�����QK] 8n���. Oe ��2�!B��#K�mal���)h7e"f�Fc f ��C��r:-�Bayes��*'` cri8o��Sh!u! !9m� aizí��~2 �"�ar�U��ZvDY�� .�P~ "� ���%v-D�� fNe':�<���9� sub���uJ�I���Qed� �PN#�Zsubr�? #�a�Xbx� ful,E^� goal� �8 I �93 !ed.�O&t9�(n��$����ig:yOWayi�9tr&L�(Ma�҉�MEGAX�{(�VMly PC)� ':�O(Linux) �� �� ������I�o f6�Y �t.�S�*wR1��/spo� �2DmS)�G-�� �'i��`/��tU.��no �R-"8+i�I�IȞ'�ofi�!�NEA��K8V, *�P/*�P&\ �)|fangor"n"�p� !b(n�w.7D�A� R�A4"UT� �Ms�VDe� @ 'si��'d (no.UP )��� phyl( tBll�+re�:�� ��? IE?=Q:BU� "n �9͟�"�="�:�Z ache�%n�cM�U��J� xX )Z yp����O ���1 upgm�V���midP�, rooting her�@e, corresponding to node 46.

    getRoot(upgma.a)
    so for this kind of tree, I recommend you to use the midpoint() rooting function.<>�Hpars.a <- optim.imony(
    �,, a.phydat)
    .a/acctran(	2%lot(m�	 )):�P�
    

    Below I import�Xpeaks call in narrowbed! �mat from macs2 into a GRanges object. If !have a ;ile, can just%/(rtracklayer^ it:%�Then we�(c�VDsequences that are�"in�t$se regions�&of courdefine* ( by^e��i͖the��bF`Biostrings) SEQ = getSeq(�A,�ʅ�,SEQ) A DNAS3,Set instance� leng��e3width� �q$278 TAACCCn...CCCC(^ A� 355 L6`kQ(TCAGCCGGCCCGGTCTGAC A� 256 Gu $GCGCGGGCAT&TGTGCAGQZ\TCTTTCCATTGGTTTAATTAGGAA3 A� 312 CAAAGGnECTTGG� QT�CT�CX)"%A A� 275 7��T� TGAG+AAG�...TT�GCG C�A$G A� 215 <DCGA _0�!D!TICGAsGGAN�is isE� CG, ���$decide how want� binrM�sB�Pfreq = dinucleotideFriGyA�L,as.prob=TRUE) hist(4[,�CG ],br=100> ,

    �� To se�Eb�

  • Locate � NITNLC<# (or HAPATV )1 protein P0DTC2 .It works, but onlyP Qfirst 60m s. I wondA$f it's due!��)�75SAMINOOO_A0removed.fasta1repeaA $self everyz![$. But why?>j #For exaAJE! �tE!lin� f1 )� � � NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV N�=�> NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE N�= ...F�,Step 0: ReadEEi�>�@@'seqinr') #align0 containAq�U�, count_added� - read.?��('"4_.clustal_num'^ =' ') � s(3D"22"�= which? _ != 7&a�pl('[ag',b_)^2_E� Tind[ind��� 5lt; ��#T+a� 2yy�4} -7�� seq2.?6�0 e-�=15�20) #�T5 7 8 9 10 13 14 #� �ison # O�TMIHSVFLLMFLLTPTESYVD #i� " ----&� -- #!9q !X ,$5 7890 34ZC3: �� � Not_at�indʹ� based o� ��)B�pS _� _> ��!indE�_gene��{�� 9 3�/Q�!��$ if (!A�%in% .?)��NA[ind2 = �� ~2-]�c(�=.c�A���don�,2*3-2 �� %s=5�.���IUE�� !,=>[��*) #��  # �v atg �6, vse���f � tt'.�7�K�K%Kl ��-K =K���#��*b�m2�^���{%�n�*b�>�t �=J��{� �6:g�� � �,�k�) ^^^ Ռ�/�( #gtg ttt cx tg ac ta aca�+6^^^տ.U Et gtt ]t #5 :�� o�uld say| pa� index�osometh� �s inv6d��mmYusPino clearFic� of w A� (expected dibu� or�it�be su�X test likeG 've �ioned��� I assum# w�2to^9r publish�so go�b1 pers �8IF > 5 such as 2�://!�$sdev.cshlp�contentd/32/1/26/F6.expansion.htmln��|,�s,25/7/742.fulr^Zb�sci"dirG com/ t/article/pii/S1097276515000957n�6vAI&� egyAous�ox8 !�s�,differ�"�condiAs�apply a 5sticalI51�4mann whitney uAot.EVtoa� is ap. �A_LetrA)4is, sorry not � goodR,iFyour dframez ch i�d xdNa dply*[ tid.gg!2&{ ggpub�df = x %�� % select(A�ains("m� ") |!<  Tran�"))< re,_at(vars(1),� ,1,10'4pivot_longer(-K,>s_to = "5�"9mutate�)�4=case_when( gr $"Control",@ ) ~ (PTPN6>&_KO" �$ group_by(�\17Dummarize_all(mean)>AA I� !� )� abov�#m"�g�� 2WR� es (6D�Kthen a@most p��^�w1B)i�:m���Y�rr$T# A tibble: 12 x 3 # G!!s: 9" [6� . Z vT"�^ ch{ >dblA�@ 1 NM_001011666 -�.84 26 1�$ 1.86 3 301039@1.48 46 .@1`5 22114��1.03 66 .@31 7 1738r!@0.834 86 2@47 9 NR_13277@1.08 106 2@3 11 6072�@0.818 126 @0.892:A�)�]F�p%� - gg��(df, x6�, yE"F5$color!U�|", palette =c("#c72e29","#016392 be9c2e 098154")FZaddX(jitter") p+�_e_mean�'s=] c�e �39r&! 2��'6�fZ6MB��E��&��� Szy���$ module(s)��c�%resS inT lookMhubW s*�c dard�'cul� s. Hav1 don� f preserv$4 analysis does�"chang�*ocedure�� sligh�� ��You�'ne�Ho*i��/-�L$-��tt�%a number� �(onsF�i)��*/ ; dogd��=`� $d`���P�(vLHd -style factor -o  {\}.txt !UJor���>��J=v�{d%%/}/� ��N���T5cq ly o!u ways A'c� go�'uA�iYHsai#at, si�"you'reE7run�th�#(in parallel% VsI�movI`4default output  (I�%!gM:)� a "%�o0*rqice (� �p+h�rategies�ve�E�It> -]$4cut heA�s? �) (80e�100*ra<is�M�s)E�$too low. La�a!Ce) ,s��i� +pdf �(SOC�er$.pdf)vnlL rga� �. a}uxe n.�$appropriat!�so �� �s!��+�le keri�T PeteI�1%@Y2 ques� !K ' �% seem!�mix%Zrelev�"er� logy..&�>F� <canN run WGCNA��$individual�,] a]ճs (�or"A�WT, depe&oc at�M�try!a!�nswer%���#� enough�A+ each�).�,A['sS;�:�e. ThQ?AP��N���"�� will�a`yt t aq beca� 6�!�, | r icif� ion buil�&to-�a�$q�EU��6al�#aE user!>specif� N��ha�F ie�-'is"/a��- M�#� ��'��Y4��"�#"�� (A/"�!$Tutorial I�c�2birG itute an�$mAm4od (e.g., PAM)%�)s%��R Gm�may���resultA feriG0Afy�SeA�, �!��5� FA�new + s. Me64e a� whe� -V foun�\: �ZA��>e&t( B. T�new~Xm�5��-(nsensus net $Y�o�Fir��Ea�all 3.tog�I�B%%�h�J!.zu\�|b%'di��$AJVVP��13s����uI��'9X� sM�uALL�r 1filU�an��E multiI'?BeT $ (availabl�-�bedtok02.14.3���It�]%}�u Fp BoX -i SRR2920506.filtered�031R46V0478R0507V326 � ���J� Togbe)`�hromoL!�2, J s�2<-k 1,1 -k2,2n my!�Jty� A��>� � a BED��aa� PA �s�order�s mer� �"�sy � �� I�!�l��� y ac| b)�by�<2L H;3`ucsc.edu/cgi-bin/hgTablesnWUCSC ' BrowsQa> toQh( li>F�! loci� �isoformi�U&)7!]0CpG islands (* = Reg ,"c�2)I )) nt� A2i� IsiteslDes�% prim��m Appl��1.�DDblog/2019/demystifT -1 �%Wnc^O�_%Z%:aAEdeaO$  !Qru-#*4 Ri flagO!O[check!�F 7g0lem!�fE�owdine�/��M_" M|� �Bb����m�� �:sG1� 9 main>�o:( ~:+? Anywa�� R�m.anyQ� vari�ay\ ala�� &� ` �QBexx.en�thu2E Td�G; , lang-bash� tty-A�ride".;$�s�, er =�9bowtiee ) {��$_  2(get_fq_�2.out. ) } else64waj0:�

    CESI�i:��github��,fmalmeida/ba� a% b/master/-�nl)� )-�a=A�a 1� pipe�nmin�$t%�����k�if/%snippet�(blockU<e>�Hr,i�BWstack!�����s$s/50443545� al-�-in�m">�SO�2O�hf "] a�1F�aOat� helpinHAEx!h)on4!qac� ��OU)e �)oul5scope k&�5s.d�= = '/+ /?' �my_Q��if( u @l( ba�.ra  a<�q"foo()) B)>���9�E B��{�( �� �9N� 'ե^> �?*�Ck ���-8 2waF.%$�2} rN```�1:ja� No, P58a bwa mem wrapphA bisulfite�� nti37AN3An pts 2qR �*ډExn)�AjmpileupAr��a��/��i�1� �!�!w%o fig��whyp+s�=�a�as"�$ ��uS"| su� N �,cigar=18S58M� ��9mis,q( �.� ct),�p�.a SAM� ��!4�Bd �I��ͅ�@SQ SN:chr1 LN:248956422 NS500355:N �HHYN5BGXB:1:13209:10692:11045 83 cF>$9888 53 � =-58 C�;`;A;�;><4<AAC@<ATATA�:TGATG <;#GAGthEE<A/EE//AE/AA///AAE///E//6  /6EE  EEA/E/5A)E6A6AAASDNM:i:0 MD:Z:58 MC$9M17S AS:iXD3RG:Z:../H2O XA:Z!RM,-9340,),1;: AA�JiAr�MM�MF�$�g + -Q0 -BA(!� .samJqT��G%APE�%E$'sE�, quality dip) s20dpos�@A�XD��: asyswimmerQ�Y � code>-Q20 �A�19a�it lismiT_i�Wh�J believ '<l ad dJb? mappm �� give�sameMi�"���Q 1}S 3:8sa-�i�esom�ca"6 �A�!G����� �-q9) �=;. S) skip�As)6�y�!20!�i"ll*�7 9go� �. Furm m�CA4�l%? baseJth -OiHjG���3 (!w����rWt5� �569904M0�I�X=��end up)a iy_ );"& Vc3U��3 m-" ;1 So I-�u?%� ropp.�*<�*ke>BTW: GU -c �? epre�=d&�b"� DGalaxy history. Arxm�a��+A`px&�v@?(if so,MRone)?,w�)��nup_job-��t n->��configX��pre�- g �UW��ag�  �+��enMee#�-4job&�producE�%8"mM�(� �� �5 �log�W�uF ��pik$E�-Ji'?�8!Ie408 lieu!|��rQ!at�.r� �) a�suffi�,�� debu�E��0L0  I1tg"Lis �=ieJ-$$sudo apt-g�Ell0@curl4-openssl-dev xml2 :�ir�a% yRCurl:F+0BiocManager:: /(".">WCYwlastlyF�VLDESeq2",U�= "3.8B^�)4���)C� y�.,B� �(.packages("�Ba�WitJ!WA�Be�afG,�?!�es) k�+l�-!� a> . Personp  1be tempK#E� $�d!�raA�M!lyŨE�ax s ok� e.g.A�E�a��"�mirror�n�� ? �D velo0 4michaelisaiahl� at g� .com%l�)��!.��e^ py&i axic���!-7�i���bD� �iwho����u�'is�>Ence&#.original&�A�E7+2 � �o� ose:F*���p=O � b/dev/lib�C/�$/��_ .xml-'n�:�zVz�%�.)�I)wsol!qw"�!e �?��>iny��f�)�&eD�� �streamB�=U* A"r� ,I know, DSL2�q-be ��to "$l���(���i$an�0 fi�E���s% *��(e��� path )?�Sat �dil(5ssu2a� � *�#i+

    F6FF� !@e�M~�x2Jlares 1 � -�3%0 w<5 ��=.� [=ZSOQ�� sOI� �) &shell%  �ma�A>.sh ${G s}�!P) 3.�7I�-

    Dp/!�:or�r51&F��b ie��.:;'{u��Wup+you�Th�Xto$:z� ��7���C�a��s�e����NUAu] @d�-ry�8conver!+y LWent�em! �s�z"�e%�z�)V p�}<'sR��aYf��Wr}Y1$v�V iI$ algorithm�gybe DGCA�&7tnot�� ��I�W<�7Mob?Kl�Pd!��@a6u^��cgh)Rqd�k�surpri8 to .F?"�Lfol�wg*�5"Cin :)$��-�0co�!�=� 6�o�m�� �Z[}&(F�>�� �C�M���v��Bs�A�`%�m (��Rpe�}n�B����� tga�tU�Br("�7,��

    O��a[�{&�� :6o�\!i��sab��c+�A���A��kB1!5/i|�?a0!O��O� ��ng�FAB� Qe�3�5a3e6�bs�� (Age- k)Ͷ(���B���?oD�zt�PaB�a�par �i�u����� �.�^��qba o1>jSex � (b.�� \��bingb X 1 9(2�P�i��o��!`�=*�%xЉ���N�#f�-V"�(�@aj�Ag !ai"?b�( lici�  4ed��a} spla�6v �)�A5��!�m�!�*Y�^�'ZM�8��)\ZAhŔ��at %&{� �&=�:ed��el�?�+-�,= ~ Age + FA�]!e ��2 ;U���E,"!A��^=c'�bc d,& $ �� ge���:�s)m�fu�< �n&�: ����)!�5��tlai�&-AR��onN�Edp\� vign)As/� 2/+� �2#&-� -)hr� L ]� � .48A*�hy�!&I/� O q��6Đ)�8;Q�I)�p�KC����H(�@�%c5'J Pol �1I%�olvKnock�ۅ�3iq ��t"��;�2=m�oaCss yeS`?�6p}ewn( effects..6.i�HBjt�  0Je!\ ymer��"�o��*se� rA ad�fH%1 !cx  bodyrdso na�=�3 do iI$CC�'nd IgG�a�e)��vDyCc..���e� !�EzPA"al�BUg%��-��5"G)*"N�Gr`�A-� F� �nw�ng Ry5�/Rd/�q "� ial Q*�Q� �si�)�or� o�#e�� ��E)%+E-)�&�=�2�6�)�?!��0'�!�"� !� |1 � odwuff#E�&anE�H'e!H��� q�isY�dI�Av��J��.� R�O)��c$ me..E�if �Gjled ,a��� � b Qng�I% -�!�e+�  �Dto rn@2r� ��R >�sa ��u+u�va�doE�U�Mip�1 �ydeE�?5+a��'f�.N regar|,if��]]v�BE{!.as�� ed ?�T"<�\0pancy& 2X>H2�wel^rt�E2�l��epi��ics!!! m��qgV2� :/i V� �ase"*� �*seeker&� � n?� s r�mp�@�6Jp,Ŵ��Y�"aUU%��F!a��;�a&�}��%�.��H�P�G'�n�,�Win&Q�8��E��w e�� etc.7!�ka�aK2n��ins��w�%�hKoozU��rTmundanz|�onY�a:1ue52M�t��*: �&�w� &��� v�Mear�&�Xl�� �en%TSS:��>�18+�!LL�<K�Jݺ!��&�:�-�0 K^�+/`� 0 bp{Iz!�^4�a�^tB�2��r,�p p RK �hCd�.hip� � wdEas homer �$�$� '���0 yet�o�"��i!e�!�+oA¡X]��a z(x%]!��6� ��: ".z"� v,R ښal3Mv&d.� xal.\yV>�!`�TR�@ 7o�At53 �5re��I�x�:��esRµ �� �t�, .�0.X |0�>W9 EDIT5>�Y���U ���0 !H��4Tf a-Oq�9��L�too x; ��C�,n4e awk" 0�r�('{if(/^�/){spj�4$1,a,"[|.]")}p�~[i$4 a[2]".fa"}' P�|in_7�A�(>BD!��j( %^is��DZ� �N�{��W����=�Clinv!!^Ar"� ��a5�A!�� !�?L:/�,$ ls AP01465tq �7 48.f 7713 12005 5122 7648420594'23021 4577 671N272N 3010� CP0005Z038�771g�Z 1536�76486̘ ��6�302���%2679275294� �@ 0388t087�20�Z���M 867 21�<�302� 2526h�47�NU45913' �86@��� 1295� 154841��� 19214�g��5� 2612�271]7-�4 �N�@0399C����5484�� 2057 13=�30�61 7]�2761 ���118Z��%08]���5485�� 17[�[� 71]761�4a� �9.H96@�9�295�62y!�9�057'�5� 2303t%�!) 71]�761 'JN3774 �9P435@ 1039�139Y_�� 1814�0.q17Y��~63%��8 �CP02957 LN865 [ �E�3 06762� 4215)�822�t17Y�5263%�u 27185�� LN9978���25=P75�� 1040 �C�219C630 M822�=C17���Y�67�6�9j957 LT5940E`�5��9)079 1429 @�630 83=)058A222]�41Y9�5���9j9�1BG�359"07=���429S�� 833����9I441�67�^�A��!�:F"$

    Expla�^ c�(" ,�� ^!� y.f��%s� !K]y%�!��:� ."�W�&�C�7 %e.Y�s�R %TjI�del�C6�so|gC���H�!"�� o�S&�I�ipQ �!b-�b � ~��BEVY�5�_X��fE� �!@�\ dou� Øs1�"Q�cmY�a�Ri�p !(e�b �$3 �)E�be�>pre%�ba&|�qt:;��$�%$/%r�r#"�x8<N��gw!�aR��x�)R� : cmd.EZ :1: SC� chrM�^�^ Un)� .R_W�.sh}} aw>M^ syntax �B�pI�)� �Ћ� ��!=�-s�!9)Pif($3:#1rA�aA�E�AZ�-6�""'=40���er �� rm2� �a��n) awk)Iz��&le s�'0c n�$%�i�~escape%A�U�F�$ls *.bam |�'� "sA�v�o-h {} |[X OB\)6/{M".�Un"1�\$0}}' |��? \Shb {.}�">M�m5A�a� prie{r�K�!op;K,Oxford NanopTechnrALI�YA![g[* 2]2*#i�K All ~�B.d" %Raw"ґe�&� E%�c��0�_dM S �M . AGtal �4es6cE'lˁ-#F"Y�V�d Y�Lc*�@-�CACGT (2�5denbi-n-B-trΗ-�.the2�<5en/�lst/ting. ��Guppy�&s%-l�#%��F�*��$tech/tombonJT!oG�#�*�oar,-y/5zBas%M_2D_0005�2���^ 2D5��5��0n �\R%E�--post.�{�&��MIQf�1(" RG� (k-me�an/std/7$��nB��A� physQ"for�^e6�'s��!���i� �OrsN>��pe =Qwi2mP-H��sa�seina��'�W���1,%r���5�H��K j-%&��I�. a sl�ly�in-dept�Q� ?my ��J��timd.one�$g$�v6�3_��s.phpn�xua}�KA�l%D)�M_*o d#�" ive.B��is NGSE�iOhI�HDF"�?#!��7rI�-�bN�7bio"Dcs.cvr.ac.uk/explos-܍ �5�Qr55���9�DF�)^�d  ra�8� of l� ��haEa��$0 *�i�5]ba�4boiler�p� h{�G�^./R~�6at�5a!]'�a'�8�o,j�-M(A�%��Q =� Vie&��Ta��r�u�G>�[�7hdf�4&9-s/hdf�іn It�eo&�T��M~[A�u�~� �db via1TUI��vj��q�eg O 2� ongr) Q}�*navRc(se��rz entiru ���9�yo�Z�&Ki h5l"�6�sO �'�� ��bi a b^�eC0�`�w�mA�'keys'�Aԩ��K $ Xure*9!�perhapLAJz M�&P  Pythk�nx�� c�ce�0I�,<} 4 �E�manip�te�U�I rai�_h r������ed3 onE��- SE6d!� :Isץex)�.�9D&s/8724A�05-and-biosql-ds"FD3���=e��!�'Sor���`ne�an SQL1��%��sf1nyIr~,M shifts *e��=6do" � -�"� arlay8i~|�-"o ��1z�}r\q&�Xb�nky �.to6T��.�A6��g!� -�9;E!�s&�� ;-��+� <&��BioK514SeqIO.K|+ders�', 'r')x fin|to0��� et([|! �-1.add(#-�ip().S' ')[0]).�U1fa�w �ou��l74rx3���e('%(9�U�|FU � �n"�Kels: pE�( �R*ut,��>� ��7 )��aG �4seqkitJ2 ��,.shenwei.me/ +v���b=%  ��2u����stat �_"�\= ���J.�E�8 if 'A�'�?� � �id��:�7.rA�\=E�%V= �ifSin se�a.F����F$F99.G�1�� elif��:N6 RC exiA.�G&�=S�!)s p� c(U~ runm��k ( �%� .py my�pl�v -q4��of)��N�w��D�> ��&�a�e �f�a�lle:�AV�is (/$kill. Assu|o� 3a*ܐ�d _Z�@���cLinux�macOS6�� 0)*J|��m���F� (a/2651/298" �Y � ��R�� ToTb�%��"TblTo!-<,� ".��.�ox!B�� B Vw=�| P -v -xF�^6�| �>�:{�)��mڏ�,c�� n.ͭhe�_W,�H�U�vD& "chrFJfix (so7#�s!1"�l� ge��>i%[��NB%["1"). D/�A7~��� ��&]?{2Wl�Q-�wy!�&m }���b����1:1��02)"�5m>�a|!��i���}�/�;�,e�ve@"`"�;N*�v:R�am���"�r� o �!�a1upO p> W,�4N( �T0U��g87!�"!eey�>poo�}�Je>�;� �5moa���W�%A�;d� � eigs�6�� /GTF4 �e~% GRCh38�D�0�4r�3-���� or�et ��6res� /ab�i�_rand&�/>�A�]��%�c��+� �-a� �<D?,u��on�%�)E"=I�U1JJm3�]_)���� d�6Gii/EnL�"��!�sh}�red�3] begi4��optE's va � su�A6+�%rr�%��i�>}O?!���7� IDa.on"�<�G�.�& �s&Jo"IC2R� �@c�I|a �GMR�� I��m�l,I�If6_�%�05 ��bth M/>(� ZnVDe�Avi|e".�6lU.߷�Jv0��ul�2&�-��r �A�Z�K+N!� (3���P a�a��atG 9�,UpA&�:�[�~��#vKor� "�Z"v In&4D�=��o���p selv�qf�6err� E�on)�ha�!bad ha���-�!)ml :[8i�R��i���!2a���m�ki&%O z=`�t0e,qq�3Eno�N�6_�I�e�$r�큥 �nu�5�!�' 8�ߥ���&div!����m"NG�X?���_upca�57>ofxz��?�� �n��~ �� n��ng��."ID��u�)A��\DE�a��ram&�k�N֡ e�%EV�G �,�Y r�� � ����of5�fN\st=�es("*�� th=".") f�tla��(2*jzx)�[�xq=Fw\�764 x$V2.�sm) = fl[�� $V1 "�\ ist:U =e�e � �&�MD�mab�vQ �u�!�RZ 6�cA�Y;A�����=������)�Sr��yi�e�O�I��\w&� mi@A�o �pw,�O:�K�>�Aɕof �00N�K� ��Ky�EDber) from right beLfore the .gz
    <1�efor i in $(ls *.fastq*.gz | sed 's/00[0-9]\.gz/.gz/' | rev | cut -c 16- |
    uniq);��
      bowtie2 -q -p20 -x /run/media/punit/data1/Bo*XIndex/hg38 \
        -1 ${i}R1_001.��
    $2z�:26:|�	\samtools view -bS - >x0%}.bam"
    done
    -�D
    c

    I se!�a%� created=�ColAnn <4 variable with& Heatmap(), funce). Coul� at b�8e problem here?QO@>EDIT: Oops, just�ic��at this post is really old. Doesn't have a�swer, so I guess I'll let mine stay."lu ) e ggplota aes(x = V( , y ., fillI�$)) + geom_-H0(alpha = 0.4):5\

    �0Now regardingeH:VUJare look(�iat!�Dlap between each oEzrQi6d6 pack�i� D pingMU0 as specifiedA{5aryou�)ing: BastackU flow.com/u!h/41914257/calculate-area-ofE�la�--�-A# -by-I- -usiA�?!�Hdirect=1&lq=1">1���ځ=�rΎ!3-) q�lat��d) x <- list(D1 = D1, D2 2, D3 3, D4 4) O (x, !G = TRUE�"6tLdW�"E�"And>Mextrac� e�qA� �Y�get it�"OV-o U(x)$OV �# OV2D1-D2�� 3 4 2-2-3 t 0.5971760 0.3171644 0.7566528��<926057 0.6683083(756224 F�Is�w�q�.& ? Or��I mis>�q� �}�0Tstrong>Dummy Dataset�  a��split(dviS * ue(di U g O��a6.��m���S cIm2x�E� I do� � k� re+ an op� i.� � �"� A`� U ve���1� these � � ��� WandGI t ��� �� ir points /2 E� m bye�'8them separatelyέ:r2 s� 

    Hop�asyr��p> �\8ts highly unlik]t�Xw� be N,to categoriz��moters o!Yis basis- only ATAC��. T!8is a consequenc�people 6r termsg pr d�%! tran&c $start site*i� 8changeably, whe�ey%� acta�differe�� s. CAGE��sures bm which��= c locbw� N?hoessidentify�>)W�]Ab^coHte8 W arou� �of a genpat!h{s, at a�imum, �P1�$s necessar�assem��$@RNA polymerase IIa-initi � �x. Som� fons�1��4broad�o���reg ory�=ximal����U�E`-:iesH|8open chromatin,E:I w� expeG 6'A>\��sa be m=a-� � st d5. ~tA uoCLsignificantly largerayE�R4I�Iy1�A%eZ be �8 or narrow TSSs51You c%of rs]I#distribu�.ofS( peak sizes�-O%M��fE� a bimodal2H. I�� ��corre e)Z�%K/��s th�,known��s� �it fit idea!Pt- s�� �V A p-��0a�I� is case��e+sE�"�d��aa� WaldA��0a ndarf rmal�%*onfirm ��s!ctQ^is�� �� pK P-42.9203348727) [1] 0:��It 1 s pD 2.225074e-308 SeeJ�$upport.bio�@uctor.org/p/64787nCA�!�ai6detail)��Ƀm�ig�%�!cl� ��:nstead%r(ute enrichm��0of ChIP/input 6eAZ��(e.g.,IFdeepT�� resum�" homer)E�t�,?ASoe]Kaf�[a�individu� c IGV^yGe�Tracks)a�group2E�AC$uteMatrix)e5��a~Irobvioui{A?tr" %5/���jKh��-B�gi�'s�v�@o err�us �bet�to simp/se1malized��al�lAsR"�act C�4at occupancy, >� a veful. O( is� binary%" you'� MtA2to��ociatIL�?�f%!)�!bnea%�i~mmon (�gl)/tY�$ei�|) �"E�e�& nice featEin R <R>�\yulab-smu.github.io/tree�T-book/chapter5.html#vi!�iz and-�ng-75grammarigraphicsn�gg�73�Ro" ~����Bj6 UbbRG��E�build��A�e��n�&�N� ryM�"map"'� a!�?h_, howevA !���no:4I�a!�=s far�vI� see!��� yA��� in a }�YedlA�-c is.-ha�$ne column, ;Ca�� @. Allޕ�do�� add Q}6BBioA,!av.�%<�. More�63pay attt��> orde�4%tEu met) row)3�t (n�9�ase) sh �>a� �`���� res�z � �� A�I also!��9+  a��� obje �Row&> S xi�u�!���B� . SimilarlU�a a7"��&DooW�sM��be easi(o� idouse un?� � �� (The network0 AD| a�do�� he)��vof modul��(R humak d chimpbw hap�J jN) In fac��? needo1��< �;"froK e t� �e5Y��nd ]b�ed%q�w� ���8original articl3~b��) serv,9 )� helpE��|howVmethod %�Awa��� �it &I��5 W/ !�Y q is "D�i��bil analysis"�> N -seq��"28")%� to "A�"�%W � ike>"� "I ( "count"(*)� �fP M �U i�DESeq�< edgeR�E�AV""�ial" par--�Bc �8nf-core/atacseqn HR� Next�%� �yadd���lla4� stepHa&uf�6%�Seq�-)��*- Z C!W#%CbO! heXea!t+Bj�103059/n��A۲\20013�\ �E <Iu�advis�toE;FASTAAma�$ of obscur�$A��In R,!�� many� ��K an handle2`�1&'ere m(convenient.vEsa�a�to mak�� �ile�����{"5n2Ban� � Lim� such a.S!�sub sel��]protei�&esy,rciG� n("seq2� ��= cha� er#%Hsep = "\t") length(D) new I�"f8 � $<[-1:-2]) write.tn(new, v�( a", {%e = F,��."col) "I"seqinr) B.%g ԡ� X �""l typf"AAo s.ng� K"!A.id Isc!ein_id�#)�} ��[�() %in%%� .id]1^B� 87 g,U $`fig|6 @.151743.peg.5044`/�"MTKNTIHRTILVCASLIAMPAMAQGTTEAGQEGASLADIVVTAQRRSENLQNVPISVTAITSEQAIKLGITQPDVIAQMVPGLQLNHSAWGLTPFLRGVGTNSVAIGNEPAVALFVDDVYLPTGSAGVFQLNSISSIEVLKGPQGTLFGRNATGGVIHIRTRDPSFDPSASATASYGNYDTISGQLYGSTGLTDTVAINFALQGIDQRKGWGVNGTTGNEANSMSGWGGRAKLLWNMGEETSLLVAGSYDRRSSDQGQPGRSIAGTFTRDGYSADAAGLGFYDVMSNLDTVQKSTTRSLSGKLTHDFGSARLVLISAFSKTVVDPVVSDSDGSPSPFFQTREFAMGGRTFTQEVQLLSPEGSAVKWILGAFYLHDRSFMDATYEGQAFGTSKSHTDAVQRTNSIAGFGQVTTEILPRTNLTLGLRYTSDRRSLDAVARLLPATGAAVTFGPFEDAKTFNSVTGRASIDHHFSDDLMGYIAYNRGFKSGIYNFTGIVAGTTTLPPPVNPETLDAYTIGFKSEFLNRRLRVNAEAFLYEYSDLQVQIVLPTGTTLTNASKATIKGIDFEISAIPVRNLTVSASIGLLDGRYKDFRNAPSFFLLPPNAPTPYDPARCSGPNPYPAVQGSAPATQRSCDVSGNRLIQAPPFSSNLQLLYTLPTDLGDFDLSASWAHGGNYEYDVFSSPLTRQPRTDIVNGSVQWTAPGGTFNVRLWANNLTGEKYYTIATTGSTAGAKYAAAAPRTYGVTLGANF" attr(,"name") [1] "fig|i%B&"0A;,"io��f[5.5,SeqFastaAA" n�63u��}VEQALARMLEGTGLEAQRLSPTAYRLVQAAPPASRRDPVRPAPPLPPEGSVDIIVTGTKREEPLARLPISVAIVQAPGEQGGALLPGTEEVAQRLDGLTLTNLGPGRNRQFIRGVADSPFNGNSQSaYdLINDARATYNAPDPDLKLVDVERVELi�tSLYGTGTLGGVYHIVTRPPDAGSFAAMAGM�=�THGEMGGSAEAMVNLPVVADRLALRAVAYAVREPGWIDTAGRGDANRGELRGGRV!@LAGDWTVDLNGMAQMRD���QYVYARHALERPAQPAEPHDNDFALMALRVAGKLGGADLVYAGNWVDHDVSSTLDASDLSASAFGIAPPALYLEQRRNRLFDQEVRLSQTRDDGLSWLAGLSFVDVRNHLSGVVRGVRDETVGTGIQGVVEFSAFGDMRMPLTGALSLSVGGRLFHSRIEEEQGARHARIEASVARSGFTPSLALSWQAGAHDFLYARYAGALRPGGLSRTGAASAERFESDELQTVEMGWRHSASAWLTVNLDAFLTTWSHMQSDYLLADGLIGTRNVGDARIRGVEASVDWKPAAGWAISAGLVGQSALLTRTNEGLRLEDRHLPVVPDWKARFGVNRHFDLSGWSGSMGVNLAYLGPSRLSFDPGLDRRMGDYALANADLALRRKDWSIRLSGSNLLDCKADSFAFGNPFALARGTQYTPLRPRQWAIGFTKNW" attr(,"name") [1] "fig|6io6�63u9�n5bn1 %I �$OP says KW9 gi!"N  lts�k,"b R� ,ggpubr. Back��Y ion:T�i� non-�!0metric (assum�" free) ver�of 1-ANOVA� � �� � �en�prox'lclear �: HSC Blast� + n appreQ"equivalL. "t LSC�n outl� both6a. "��global his�yp"s& (beca� ofjn �wor��.M(HSC,�nd6 �-a �(l>�)|a m# lowe+0obathwpairwS !�!� �it�"(�!�discre�U LSC-1n %r=I person2�$se�y2O in behaviy4 �AF �Y I su�at6� mighu2s9ilk�"in]� ]e��i!= quit. w p=0.14Cthough!i�Cl�$(s" .5� �y)H3$c issumy opin U �67)����icuw p!�fu�dv14 �hug�$above05=B� koncerne[� ��*�! 1�%���$}�ek!�i Ysheds l%�mM 4, i.e.\M��Mk�b�#�i f� ra��$he�aof�ty� �:�ivQ8KW-)�e6_sul�in: be" !�^k��1r�%or�& �.uA�V5�%&(i.�2stical )ZusI� 8�#l]r%M}"�hi&G22�)a��Jm�M-�KW ���Iprq E! �I[2uggested Z�� Each"�I�tiF2ave 3.se>"satis=B%A�� >x2�[ (poss�Fried�![)���'%��i.�WilcoxonI��O29 ples!��ori7AGAq\! KW9 ;$a� VAe alotA�s��^K庥�pra.����2� �'w�I�I��|m#�`�� 3 s,KW%�6 ���)�w�at we�$�v)N!c"ru%RzFura"Ib%��+iB ��o� two-!E9)r;7 �jKW�~e�)M, (ie$it twice),&��*�a� omes�ne�"1eA��Qqit 6 ti3(at 0.05 crim��}�A�)*a falb+osi��(� se(+r!W��6�) not)���ly.���+Y�h��9 :��uEa�in�%!�E�dula��� er!�"�%block�>

    a1A�h @AQponse ~�P�r�� �#^ �F p p a ve�%�_�Ff).7`."H$2�W!< + �w�&� ��(F�"5 (df1v60HN df1/0LSC) �5�� rank sum�� � tinuYEr�� a�: O�u�6x, W = 110980,�0 = 4.849e-12 .VhypR sis:'� ~-shift���equM,oV)nU,� (A��/@ k' ed Q.,���3��m��-meD.dA�!�����a!�i %ca�3 tell��'�p1'�T"ito;q�� )����D)1�����+Z' m�()���ce/abs!��*�genesJ7.�*}54dplyr) combine7c>_join(S�6JD=ONE, GMP_MONO=1),E�F>8(TWO, CMP=1)n[is.na(})]oN#+Edit: ToMp�,a�-�ofvx �f �st sol9-� �!���reduce�"�,�e&a 6�=*�"�6/purrrn�!��Qc('!� 1',  2 3')(t1j� %*.� O3F4 5 O2�O�4 F 3=1)Z2 ),Yx�$1- #A! �123 # 11!0 # 2+;0 # 3:;4I; FK55>�� �$n�,�!�s� well, I�� List>�!�o#c FEq�1",2 3"e�set�=:%4 % 5", 67.;:.7"!�) upo(�(�)>> F� � <?� � �9

    Ay�5�rU��$�d� M*:%�7  tx � )G B� r��.�E�seB� IVUBR�&ETI� 9Bu# 66&1:\�o$You�Y� �+�*� of�s,C ��� A& (���.�""�3r *�;�Q@��s\\ "�D"um N et 18 #le A,�0v.  �B�'�9Dd7'�. T"D d3$(�&a|F�� i�E�>~I .L�sm[�9c(�) TWO)�Dix��$A = ifelse�XsFA,E0), BR b )mIdf, ...><� "Ah3!� I�1xnvaPIDe PMCID�<n'9 ��pmc1�)lo�(P=*o� �up)V:Ifai�)4'trieve c s�m�C� �A*� a�)�@�3�k�e&�Bpmc httr$jsonlite) a _pid1�Lc(30024784, 30555165 010081, 316888h1516032, 28588019, 29286103<> as.*�! #-- I%�to!O ids ��PIDto%cMN�H(�) {�X#-  M�"APIwest+4query EpasteB,aA laps� �9%0D%0A �� id� _req.@06?�Dxwww.ncbi.nlm.nih.gov/pmc/utils/ E(/v1.0/?ids= b,�, �JEid%=pmid�=!�!�.=no�# aiid�J= emai .submit=S � �!$_] � GET( ��5�=Lent �texEPHE�JSON( W9�GDnfo" #1� 2pmc v�v� rec�)II�"(pmcid, !;�$as.�� �;,A�)�QHaq 6 i2[�1�!)l]?return � s) }yv�XAterty(.�m:T";aE��m� pub_�V���FlyHo� n$�_idqVmessage-�--m� �!`.�... )Sdo1�tryCatch^xml id),9�.�=y�e�N>� F�]ci.�VID.�N-� NULL �N}  if(!� (ull(doc)) {ρ�If�&ceed,!��!�%�E1�pmc)�Q$.j 0m~p� 22I _cap.}ca�m[25fi=(tag =yLMN]u s�M��{3qsv�13,�q��z �' {�O�M�}�-�ws))�} ��B-G�, 2 NA>DNA)�} }) �yh�.���In�}�v`�s`�`T�( 1 - Pat�) demoM70 base��j�s`�w�>w I - �Fvm�8`:n 

    �s"l�ire��q id�Nr-is. G�Oluck!� �� [�RaIb�316ses!�i�^*pro6ng *)pt Pyth�6d ETE3"@ I've�"/ �ys$/� &/ar�?ode� ��ard b bootstrSM�ax�@ih��bOrst9 e ML�/ el 1Z&y itGTRiSKDm.pml( , 7="GTR",jD Inv=(* G9 + rearr�Bb NNI" ntro�O pml.�� rol(�K( 0J�pZ!�model�perfe@1- _{5TW"�: *ra g�*�E�< stim9; inIn^C{ iso!�: },"!�8r= Iio�9he NNI& 2 Oa g!�oneE* THISf���1�0 emperi�?EPIKR0 d�#��er5�%A" (.�in�2A,eAh2�Fq,M�/+��e,sofA3 ped��EB";B�to6WTGnsure�a*P�8�opa�lU.�u�^� l�=he� on-8��is&vAin!:�T'�$%?:�$%XH H����!��4_�A� 5ouuAg�I� be '�'��E�< w. 3�u��;BS(3, i��4 = "myroov; bs.c��"black"a�bs.adj =m� 50,�=nonj!Drob� � it s�� >80%>) �2�

    Can i HIcha��9u{�6E

    �E�&paper%�s: ByY�B.7�8s/  0291v�EoX�G�E�8CAK�@%�ZIJu| � / ) � �"�O {g�s::��9$s(ncol(.),dScor<(.))}&� $as_tibble(`4_�)irP� 4re� (col1�Scol2=2. ow^1m(R�5sC=v ({{df}}[[U ]],  2]])./R,unnest_wider�=.X�R��2[zKs_a-�&�Uto-col)*[ va = i �!;s_��=c�1,%Adsep J_:c4valY� !col>�E �few-Bu�60[1:5, 1:5] # A�AH: 5 x 5 C0023470_ ~669:7021538~"[ int�� �2683784NA � �5 F NA J$J" 4J$J" �J$J" #���91{*= ble:. 279094.�:�]�Ikr<�C[ �%�chr!�1� 16348DoG�merged�J4>JrYp2*s 9 �a r��1-d��reaV B�(0 (?2 � .�bio"� c� !3 nno�  bGAy�%a &*NAf�KJ subsI@���i� b^:��)� whIkee 3 e�.�(on un�(gj@/tQ%� agai&�@ �alw��w�(� y� $P� 1�or1m��V�(not gnu; llel }$n�>"� Lima-� is '�K�c'� '5 MC�2wmenI h�T�Kll��>*�>��F� Channel.!� PathJIamsws).5+ Csv(;er:Y*$,sep:'\t',�0:true).map{T-�l� H(T[0])}.into{bams1;2} bool�(isC�(1:�� 30.endsWith("_IV= _sor.bam_rem") ||Z3gGJ1 ");�+��.- �� T)}.set{c �s} /26/!F0ex]�} �<�!�� maxFID14��"v]!E1} vs ]2}"A: � bam1 ,2 ��.� e =s(oG!�(" .pA") !��_r�Cp 7"" �#�J,syntax pleas�A�2lA -t �1.toRealE�)} -c �2:-g hs -n�-�-q-$1 --outdirpu ���}!>_�invokJ�#2I�X$, @zx8754'��� �,4!�$�o}Q�+l�$they gave,m,�/m|A eleg� x3forwar���^>%5&�C�E-�U� ���e�NE>�I�"�gj�seq_len(�N%�5QHg 3>MSE-*I���IH6�-):AJ ., my_qE :h+source_A)�a- B%8 J) �) 3 �- Mono pA�2� 8� 7 +$19 s`1�-�+['6B�,] ���i�  Run �0 37 SRR292054g �5 38 �9 �409K15)%2� %> �!as(T[st(-�5iPE,))) �U"<1" 2 3 4 5 6 7 8 9 10" Z11 2 3" [14]#45 6 7 8 9 2i2i2i23" "CMP�  � � [27]� � � � � "GUGMUGM U PGMPGMPGMPHSC� [40]  �HSC� KHSC �HSC �HSC �L K  FLFLSFLFLFL F [53]A �a�� V � � � �"a� < < < < < < [66] A�� Af Af jAf j j j j e e 9"�G$new_�-�f�f�\ bfd�71fl "2 bt "3f| "4 b� "5 b� "6:�3�)T *TK i�]l�# ��U�0tnd� ��8 9�O�ŠOW!b�Jo4 byNV���n�YO)�\e$OK �, �0H 2b�.�'1�#�#� setDTɁ #��+* �8id df1[, myNewC�Q :=!0(27rowid.))]E��+:�.Z)1:�{46�����)2)7� >)2)3)�>)�. 4)50^{4R5)^{5)6)3&Zb �\)7)�q>�7)8)46�����)9)7��>)!10)8{CM CMP!...JjBjsF1nD/12925063/680068">A�)i� h2�\eSI�se�XwQra awk��-� *� 'AcDJ[iXwhHcp��\field �X iter-$Mca�W�F"`A shor9 perlt�N�^$ )-lne 'p�q "@m"� @m=(/((?:&�c _id|� � |o �)\s+\S+)/g);' Homo_sapiens.GRCh37.70.gtf t"@d$_id "ENSG0$223972.5";H!V( "DDX11L1";*�a>JSTR 0456328.2�S-002"�W�W�W�W�W�P�\1r\�W�W�W�W�W W�urGq�k�v i�-�eiy$@m G ;%y�>q'm�*�&���ne[$ regex mag^D6ul> �c\=or 9FR=.<:+IR@mA+ @m=.&Mx�laiintAvEC!su&Wtb S/A/g�`A�2�:/��,t.ethz.ch/R-��explainFSfI�Lon�I�BQ�.�?y@r�z(2 ) pZ$x all.,?66N, 2) ##�MTGve"SJce:�3680457"Rew-@_!�M5 %��AZE��'��A now�DmporA�� *W#Fd��e�W�[ip�*i4?X�x�V�B`z*O m� Ixpredi�Ke "��Bam�F?diF�mv�Z�UsI�SRR��^s,6! X-�6�e mFp>l$ entrez e-5�-�kBZof GSM 458i�q�@esearch -db sra -�50 | efet#xml | �x-p[`trn IDENTIFIERS -if PRIMARY_ID �s�-�"� �� �$SRR5755657 ��C GSM3768,) 6f� /����8F!~�B�857194�\���"p&do ,Xerq-dumpG-;=X.6R)(�I^��%�ad�'color-Q��M ugrDevic&�`A�"b\oe��r�# ours?.mcy. W��A�aG!�v,bafEo�pathw�b�p� @a�Ag�*d grad�1U"�m �!>B�( "red�Y8.f:2$ %u8AKa#gUs[2)� T9 9��an!a1R[me6crB: c(df2,  ��G(Dwaybs)�Entiti%no�Ih =p�u)�#�$ geom_bar(q�6g�Og� f,!�0�= ty",��= "�"�4 coord_polar( �te_min�q  guides�/>�%x� �{Cl q$lor 3D pca�@� R6]A��/d ��.�� ("sc��,3d"(BlorGc("#9�@#E69F6i0#56B4E9") # N�idq�ac݊A_&?_ �;.d [as.num�0 (iriz�4(Species)] #eja��-0 s�>g ainV 5�pop�sion���c etc. pca�i�([, -5]) s3d=25(5�x[, 1],!�z H*2],>=83],xlab="Sepal.]^",y width", zPet( pchOH6,%X=s�^gend("r! ", l�I� s�5W�-t= �s>��c����5d��pAv�26�F�b6�i0pOW6��iE�iI�� 1"><�i��fu�N�q�4utY QaniECey�3D&�%okB@ $,sthda.j,engS6/wiki/2N -3d-q7s-r-soft%�ndata- o�+nZ A iHuߵ�><�oH ed R:Mse"�$ �~a3s.� I�7a�'-o� solvduVlem"W4� "Col.Col+Col(ol�Xcolend" "H1" 5.1 3.5 1.@�2�2" 4.9 3B37 3.2 1.V�446 3.1$� 05" 5 3.6BO6�4 3.9 1.��4�7O4 638 O6h944 2O6�109�1P^5�7B�p4.8 3o62�� �R% 3%A1 0.! .8 �2.NB%�7 4i�4 2st" "B2.)!x.3.�3:4!�8-c.�:t.5��!�2W7W:13.�8!lA 6 �.898!5U5U)�1m9)bE"!%�%S-�!=�.�!�5.2M��.�!� �M3X5�!=A�Bv6�A�B%"A�Zx2�A� .2 4<1.%&5 4x>�!e�<�LAGm�M`LSa�L!$.a�AC2 " "Le�aq�1E�4%v64U;�OA9-p43Me�5 2%�6E3!.!jO! O!e6OA/��A�A/41-�m��E-E�6RkA-4E��-y-@I+3 3U�8! 3�.6� :�@ s�"U���B �B nB ��.cz� �h�D �D �G  # PCA� s excen�he �K o �2 �n Bn grid�=x PC1o PC2&g C3� �^ >] -v2+-�� �y T,inset=-0.04,bty="n") �A(s3"�xyzp>�D)E� 1:3])wt�<"�E �),cexx�7�3� 9pos=2a�FCI�is�w�T"� j :2^F��Uvo31�� E&� 2:� 9��� s!! A��LI�~-stEZl*��Sa�*o �wl/A�Dga�-&9 sphT_�=�6<�" �.)*6(7Ps�_of5 s - ;:��es ��S;� ���fF�~) df2Z�* �((PATIENT_ID%6,, -Hugo_Symb�5df1#7k* left1T O�5 #D1ge 2� �$sLg1�P%_(e z>� P)�ht�J!Y�"�0rq%+-�m �6 0�;12�2~b�oS!�to�9a=E�Fl ID_N��-XF�B _df$� u�S��_df7E$= Se+ne* X)[, s] ExF�.)t(=>Ti.Assum�# �2!Gh�.IDn�Itp@�Y thyl� _f�`e`pyQ�Ui"er Wou�$de Coster'�m�0���X ?�!} h0sM0te�W�K�oˆyE9CBstaZif�hC#[�LLR. I7Yll�4w -�b1g'3 confa�AARre�oA7is�WO=})1LLR�/T * N-CaWb�U[�FY hres�>@0 <:�ēs�� lly,i�O J��e B�*�VjtY< nopo�blob/m/Nr/Is&2�_=�2�n� F�i>*� $ def updatIll_!s(key,�_�/ed_cpg_X� , is�iJ@�)o2if key%�in 3 [key]�(iteStats(nuNhY~[<_�"s += 1�/. �0!N^4A�.�I,0N�2U�b`:�� !Au��ijdec�(8�A�R)�gt�x1�bdepK5�]I�2�M�-�etE�B�!�# [skip"�^Q"uu� :N!D)Q= int( O['motifs']&�0ll� floa* log_lik_r��-%�# S�ambiguOa!�$if abs(llr��m\s%�_y�*�9�<# [MP NOTE: SKIPO�lt;��inu�4Q� = �'].�:hIFh= 0e2�elrMw2Mn�5j�%�f�>:5[�m� ` ttle�Nqag"p]A�Is`Mk �io5]�gout��j 5F�x��AopEa�YBeem3hke"�9iy B�� nV�zre>- U$.<�#;܅��:"��/��i.A�j Mp�6�M+I*�*>1) C���� lor/� �S.O  =D�&�3"VB trn[,1:16\ �(x�<{Y�if�= �)>#( U�JO(2.(2") }R4L2)h .�{ (tsne$Y� =� �RG�G�L$H1� H2""tlyE]A�[58 Fe6mcߎ��(" \R�) �91��-e�.csv('�',�1e��T*.x=1) trxU��#=1) dim!�) i u(as,2��_dupli�A�� (erplexity=5P ta=0��,dims=3) col)wrF)*CTx) �Rif(greplE(,xQ6 U<bluxq U8,2F,#w#��.eallexi�"��w%a } ) �or1�ML�) . ire(rglm�3dM~[,$!t$Y[,2], 3]I�i ]>] �� It/m��"�) S��� )�E���A5R\!� &�ar�N�G��!l/;�*1 at:gn�� disp\K }*�|WB��l� >But ����#(�J��a�3 tNrgl� � �gu ��-,�:h& ksov %>�+A�� tG+6LJ(arto��ax���)�mGalax�olT�ms �� (typP;condaIB ) environ������l� ��!�4p�Rsm$itself (no� !� �R�R�l 83). A2�}:&Kg���� m3� nA��B� ^a`2~si�'�J�mu>#a�ɩ63. e�i�o�b�dtoA���I vi�)�a%�hO-���ly �DIA�� i$]-�{<p�RormVav�!�8. P��or � phyl��tic.QAv%X�@�t prec�sR"}'Al rack�log\ nucleot�-nIi�RMJTheEo�asses�M݃�OA�=uE�n cM%`�(homJo� !h}���itA['t�%i�o~vio�!���q� 1(y.���E��!#re�� 6!Y�+hsS.!kinqS('-')�Q 0� e�>�b}���p8 �pD?��?Daz1 muscl"�/�S�tng!��ts1? 6clustal��O��� $�*d�easA�Agur� ډlinux ��evrda� suMquick�rB get stuck0�e�D� ��?d8 � ��r���1verify!�ha93%Gq��Mp>Aq�2IU !�a�sJo��0�2�p.��%�n�0Don86/baltic3nyb�c 3V ��?���woU�Η(M�p�PA0)&RsOsJz3 �M�aAAGR�p�(iqe� . On� �-"�'s (-rf)%�"tA�( Robinson-F#Uv�r"�w�X s. (AwI#8aJer!z feelyA9r4{�|� rees��# ed (�B��E0 Dendroscope,�Q Spli�YeeyI,ba�>%g!;*���,Hatis �%~4Q�^�A񥜙w�U-v]otaxon�To ��F!-�tax!U��.�% ac�a�f�'ofiWIp2 (File>��>Load M�R 3b�[a �(�M adto9tE�v�n"V� a�e*gEg �[%B.C["&�Wg�Y.a�on!bonesf��!:c�ic!4t/2�a "�S&KyreA�A�"(A/r ��ma��Zns �qOy�ofX1{ 1000?� .p�ae075(zSxU�S�Snqq�y�tngr�{�rB�,�+ cer�)ly�o: 1@effici��)gorhithmE�mF� (ML)"�Yk 1(m�(� )try lo-�im�J� Z1!�A�5�GdG\z �?GZ"�![�6� I�V� #q2/q�1 ris[�&��@��& )���B^got"2 e}%���9Q� lfany�q l!�"�} ]%�".�oI olytomy%� �Et��a�od�< � mpIm��![��Mip��2e��hVI}�^no\mpTh� Knsi�H2<NE�w"8 aif^ MbҕQZH�rB cme.h-its��0exelixis/web/�)/raxml/n� RAxMLm 9��Non-R�y2+�sr�Pi�vEg 1aA�toF�uni-tue��Den.de/fakultaeten/�� ematisch-�Vwis�R(chaftliche-0 /fachbere/"�P8k/lehrstuehle/a!Oa�s-in-6�P9,de��2��3=9 , ok;PYR�?< Ek�rcOisIU�0�:!5A�so���&�A��flaj�}a� DELaLkj8�m٤l7%�op( �.W,!�� Z@"] ic, :bifurcءg�Qڞe���^ . ].�� "mi� �"͊"�Ye�ML1��1,"h�?ɤwo/�>6 a5�!5,means. Techn!m� �wup��J�A�6s�.'ahLc�Frt-be�21yv�qzy!��Y9%��!�3�� �as ML,�%�Z��%~����4g8\ rapid ev/u�Rs� ݡsi�1��v#An&4$.CdSa�A fall���O(a phenomina�n�'��-bran3�t/�c'):,5p��Me"��{#A�}i��� p !8A!$�o!".vj#m �����}&pRI,�<h�f$Fowlkes-Ma̳s IndexO a�:�s �(as Baker’mma 4!zY\S  h3��ed*���exten"zR5(FK ran.r-proق�P�G-Os� N/vignu�.�#*� - �snz�\�}b}�� s���6we���(A�I {ctssat�?)�A:Vlu��� � �V(ti�U 5 ��s�16� h�a[��RO?uda�o -��e��3�:<&, )8^�/dis1S��v ��8 � �ea S*�d�Ca"��mA�A�.�e�24downstream qua)7at҆is:A��$e% &ȣ���1� ���6OK,�W��8 �'�W^i�I"r�oKaT� enzy$�%d�a�#� hem�I%a��Sa" ?/<&� ���̶�KJ��� A moved�8c�p">*B �Lan�Wa];�f<nj�� backbA2i�"E�i\�a �ble ? Am��ef~�?� PyMOL& I t���j��Pair/ _fit. d�HAv� � s : <2d03B��4 rcsb��struc٣/4�{j?�=%� �4zv�[J@ZH 4ZV8�?�) |" >�!._� ?m_�,1[I�aB0!zN4 3� �he \g  ��%�.?ϖ[ 9p)YW���resn HEMO0�I9 �6)oGKc�,zb]J�!e�F9��Sj��9l>~6�7IVUTq��,E�,en)i�7f p 4%>��S�P1q��uAsRi��E½A�1&�� 1.9�������avail���8 e. I pick�$wy�m�Os :MO.<F����Z� pa�?6�=Wf �z��;.�iYparKVFL"G.~qqzr4~*�*H*$LBC-LNBio/2u a> ,F�673rfc�s!��xjour��:aHDple/S2352-7110(20)30319-8/fullw1�\��,pymol plugin��on �nٗ�@is ir HETATM�" &cav%@. A: ��� ��ߜ pngM)�I<p#> ;����~D�E��CaIJ�)�� idue�rr*A� �,!��������4_ ���5.0!7�FKAF�; ��7-G.=]]�Jct f��vfBnf? f ����KT%?_��n_b!5to� pdb�mc("�mof h2p%L .Rn  ,h`e s�Ud�aIEa5~-~E�a|< �|�reB=re3)1Pu(2dt0,�) % CYS (�K , ye4)g  !d��� knQt2� E� �.q�S� nta� cyanI�M�&*�*6e(_e� �uR�) ����!?"w�8���� `Fmpt�ulh.� eresY[toŪ���zA����o-�% ant cytoc�es��B'�qAa*>ion pip�z�$�"�(Lt�It�{r�y���C-F_ *� t�.$ann/prokka�R�� r">P�(� P$�c�a Qi(p�ppub(4�2014)��1�9�L�]�tly� re's�!B��oschwe��s/baktN�B����q��r$c�T_sY ORF�t���"@E^� �a<���"� �%�!��,5K^?�ENSEMBL�$!� �,�9s�cE���"#kRefe�g%e�3�A8h+7dAsNCBI. �{&��� @1�s�1� Z��P9�Am�f�� r �, eglyEo� V) !0&EJ��� lity7�P5i!��2%�A-P�!*1��%\t��hfuT!�re En�!��A= 4 ex�![�w�� of]��MPA�ne? Ard*"+=;9A��9>� asia.e ��H*�[/Tx/Su! ?db=Mu;g="�[4117400;r=1:433h�,3-43352736;t(T�[61���>�A5r��MPL-204�w#AgagXo�rCDS 5'�_3�xlet&t(�col!� 4"[^$:%r>desiga�~&[>b6*< had ��)�%���˳!��"�^"�i �`agg����h� �(vel� anrjQ5 wee�go% MZ+� switc$ x window� r��@1| R�O.3�IL �Z�curŞ�E&A�M�-%�2 i&y I�,r*] 9N.js )<gos�Q jmac.�&���lr�zj%Z��� I��n 0v r���P: 2J�=����6% �rf1�#(ro�ll  !=0 )"q2yv���v� $��~����)ev� $�����=N ��rs� m{�O�yI�I�Q5b& ��ax0� a,U~e�)��!�!K�`/a/�# Y"�dBu;[�� �� �u�u�a��yh ��mS iA� skep�"of why"��:$HպE6%a���ud�LisA-� #�7)`����e]p���x�] ����~6jz��" who /+/���� � /k� o���Ct&;v bash/awk M@B�-Fpz 'NR==1{p�d}; NR�a1{N=0t�(i=2; i��D(NF+1); i++){if($i/CxM(0001) N++};�=NC0.1*NF)9 nt}x�wtsvF�Wez y �i,�ka���s3v!hen�&lo$! e*Ols (|� �E��:ya��H!g 7a��"}/. A )5}weg� ?%3m_V��re�3A' &e�,igh7IU��xED:��%@,na�5j5��%� })�xT&�%�  .�&\RB�!� a���7sK}I ���q�0�e�'eji�eN&��thp(Ǒ�%8q_>B�IDX = �(m ��x)m�(x �0Io/�C�A�1) m_�� = m[6 (IDX��-,�� �.�[aa<��.�Wa�6'gT Kalc.o�f�9ut�]K��(����<s� ').Svariant�*L TPM a��J'I@ haJ=a LOTA�"�!5�doubt���~��FS:TriR�)r CCMP�K��un���&an MSA�Ht��1.5 mill�<N�gN� pru�]����HO�7dKA�(�-Td�a�mb)"�0o��u/a*�{%�� ��i 2 AA��'m? ip=�3r NefM?"&�&�*ef���)� --as�SI�yRes-5 a+ link��any�Hcl�t�@rf\)�

    Al��Q�!�ve:&�xA�$of DeepMSA�0 '�xi�>I��)g�e�-��be�Fit[s)lsR��kr�-9.�*uSfA�@�f'dA�-j* do 1~.N�--a� ���� hundA���� !falaP~9!(vV�) , MM\�3,���+ M3�!P5M@R�:���3$:2:/�#>omega/n2C6> O*�!e" D:�%�0-aPttW> -to-�2��T$$ebi.ac.uk/�9/msa/ �or�web�>�bu 'ogs�*4--[I� ����4!3˕�;B�*�marbl/.1npn5Parsnp�. �%(-"&(�Rb*�

    Aembli�nda���B��"m�s� (SNP>ll�r�ph�B(4��-�4 s. )B1Jrag =on &a��c��� c4>F� "�$SNP�A�fil= ion/V��A5ͬA�exf�(��MmD�:�e�2/O� �ic2���|��Q"��Oe tldr�� �Ee�|%���A�T��ly�(microbA���/,��76�labi I�!s[MJ �?$ SARS-CoV-��A^�e��po�ry��ӡ �`7f�S��s�r^.a�h�o�1J:"Tep Uake2�4m �3)$�ҡ�om� ��4�c1Nb=�an�A�!_�}� q�Soiler/ĸlaime��qe��mai@�eN2 � a� �i}#b2:me :g�c"�� �a�of C5in6� ://dnN ngla^/(mauve/user-hA�es�3n� XMFA��Y���gAzE�0kaIa�����!:R�BAharvest-eYn�H )��A�.�5�H&� ZY��sars_Eǭ�.xmfa -MJma>��

    B� m�� a �+ ";A}��a�I'd�e�� e3EF!P�iIbw�� +0I manW @ 2 co!!s 1: L C� a�-a-ftp<�("'K��� �� (ixF0n)%e�D��Hum=l � downWq ��Y}cB2benR�me�"��aw�<dexes/k2n�Krake5 Uniq%B�I�& GeF. s_-Dl�ckWood/kV2/%Ys/753# I�(t-169228885r��refwM/R I a��� if I�:�$�r"�%�8<5�p����%%�a' ;o�:cC:Y�R�me3Z ��A�!�ś\��D��/� �t;�t�NinL&wX<"(��)��7��"| any�e� ew6c�<�CaT�Mn���� �WQ�o��:usT,v !.J��E�V�6a17 y id��a4-#l� Yefda�dDB�he --add� l�� 6�Iq`<�as�< tuto� � #`(FB2��1 book� �An��/M9�s/-�.x #gscڂ=0nh!�nna� I+��%GsC^u�0truw��t�Ore$݅&%?DQ(oYs��%�taa^leH>�=�� ol�S�MinusB%�re��?)6)�, x��P�1 -�t >�� s.fq�n�:�af� FYI (}&OP�H�Iv hE�FM";�(diagnoPA�(en poW�ve�?a PCRȠ+��A�OP����� familiar� $ oncovirus�Ld�>To  r," g��� n�-#&�e��z }�oXW64�c)��(�-'m�@e�2y �A@say) -8� OP�)a�}c�[�(�H0g�e ��;I@lyx�� s MCPyV: �)%�8(�D5�{�'�&y8A�~�"/(viC��Jg>A�� ��ns�f�nc�@esb�To�qE �Q�v�SiKGp�B3S�e�a%|/�".P�i?8 ost-��m*��t�Q�iJ���b�}��2�le"}A%�RC����c��r3��Չ��� PCR'� �=d s �i�6�a9e�' a�A.6!, -(8�H�."a�Nv4n�a�u5�9a(A�3��sy�hse�|� eH1\U-ÉQSwet;%waJCndFPV�7��9�txx� al Sɧr��!�s�.be��us� Q;��%{abo$� was/��2]�"[ Thu@DsI�%gOPA�AaT �cWlo^G�?bvn��n҂i'INGS�j�V!re%7a���*�}M{6��pr�S A��IA�!� �nCZAbig���*��obM!B�Dc"�"�LK�- rus-v� �<�sO&J9Sl�� bens<ρ��QC&~-AQ�6�� bwa-mem�h�JhF[CE���.!� [�e�d@Y&� �1 � ��l2 �="5"�P�u�� >A�aAal� k���/.�a��Per�WYi7�1"��gat"T�=&a�� ae��vt2�<>u%uVCF}h� ��B7ig')AIGV� e�j!^��stu�oac��8has integrated<`/li>

    OA. Van der Auwera, Brian D. O'Connor published through O'Reilly Media. I just focus on small genomes.

    VZJmand NOTE9��I cannot remember if bwa-mem2per se %� yeahE-resultsLA>r� ng becausA�(ere's quiteMg m ... but!R �se=�4- its an exact!de�� seque `of a single species, thusU0direct blast-e( �or-minimap5 mapp!iaw bett�I�!�an 86K. Just!�m%)�$Z

    YouMrstart�&tryfAxa metaEC��Xanalysis program like k)�. T!K@ are a few databa�& thata�b�|One benefit!Uu!Tq!Y it has op� s to�pm7 most�ly taxaGmatf aI�Psub-read level, whichE�@help with identif%AG��ed!�chimeric5��8I've written upE�higher-k��,n more detaia�Iwi3:q�B�2ATs.stackexchange.com/quA�dons/20542/how-do-i-measure��-propor!=4-of-different-1����$(-�Leads 10 --db /media/a�on  _temp/db/i!/uKe -�I ory-q�4fastq_pass/bar�`(0?/PAK83314__*./.gz --re!��.  .txt >ou $ hA� �2C �a3e0b7c9-e6f3-40bf-900c-b1c59eb4977d 9606 208980:70 623:3 0:53 :1 0:6 D32 131567:5 2759:4s�8030d33f-3838-4ed3-bab6-5f3b79fd059e 575614 164 s68sg46 :2 0:13^�5d87a648-799d-451f-b747-32a0fdf2517a �190 ^108 �5 0:4R�8aba667d-4a5b-4f8b-9d18-1b5f761b87b2 R267R24 R$9 0:99 1:1��1b3501c2-6766-4ee8-b984-9e92470f37d2�335 V70 28901�12 35885%21�6 0:8 79�!,9 ��11 41 U]� 75c2625d-ab87-4614-8d0d-c9d12c7d1e19 0 024� 0:208F�902b0ec1-80d9-4e07-80c8-29a79191d931 F17%�75#�56b7c8a8-4cfd-44ec-8922-62871b29d31c =y338� 0:10 ��22 � �1E�5 2!!3-�32��68bf6718-2692-46e7-ba2d-f45952fd613t9m191� 68 1%�Z1A29[�81f0f4ae-3bb5-4b94-89ff-152ff3b6f5dL[2�4me4!�12 D 6g/Aj�e�Not%m�(either. But�erw�3aveatY�F�q HEM�9 parame;v4on. For molecue� hermodyna�to��� v �to e� a topS�T��Dbad-boi� iron^2�or bo� �z4�,� of�Vch�3�#"D �scys�he@9 ban oxyge���att�,sub���c�8a steroid —le�aignN6rad��"� ivJ boy� do k*MjJ� ��g��nd atom�D-assign=llxw�. A che��Ktrain! said=� �%#�,a porphyrin <)0no%�:�reality,� fg�giva� i� pF� i.sa.�":"j�,academic.oupE�pnar/article/48/W1/W48/5820880n�Z s� :���I"�of –ligAq. eIf[ .�B�B�6��@22/14/1710/226866n�M"�co�BaAgl��:�~m�ѩ)�!�two-d��)al? dia�z�pubs.a�Pdoi/10.1021/ml100164pn�Dra�a� PDB:� −L)\C�in Two D�s.db is M  pa�!f�quote�H�Qgen� �:i!1��e�i�&���s p"�%(by Desiraju��S� r�2001.14#�mal dist!�� !wo s��nec|b����k9 to 1.9 Å���le�g!�,0.5 Å. Addi!�al1� � acce6−�Wge!jdo� a�"m"��f�1 120°. 58� �A^re�E(a noncarbon$%[t� ��s�Gor��di�'s. PotMets%" ! calcu��t&)��l �B'd��(re)�� )-� 2, � \s"c1�e9dq �!� 9� $ir geometr� |#d�A��&� on1� he �.15 Ea#+�%)NF&occup�E�� �ed[ close li�!s,%tax6H devi���e�0.8eIf� �\�, p��X  4)f 2aeVB ar}� IR� ase,�� l� p ^, againet6��,%�regarAt u �Oac)Xartnerr�In�S tras%�Derly ��io ^s,I8 phob� ntacr$�62+R�e� E)@Ewi�$visualized�dE dash�  �ly z by d�" labe� �� 0ng� E,a s�$� ,no� 5.�!SQ�It. B�'m� �typaaly%E� � subpocket�`i� ` I�refle!J|.�U��'�preF*sia2� �A���at�!�hrem� � � �li��r�%�cur�%ly�(� dy��� V)�uOaontex���sM�cc�89  %�hal���� e�umYKy�!/sum�va-Waalse�i �i&�eBagf67&d.EDITED0k.5 �Qng� a��)deA�e-m( cros��5xv�Vt�jnaD z&�topicE� itle}p> >T“ObR�Noncoval�Iy0 E"� al EAv�D� tE� Macxl Sh8ms: A Novel Per�!�A� -� q Re�) .” Jourr�h� ��ri�_mo;4ng vol. 62,7 (D): 1734-1743. doi:? S ,jcim.1c01406)�>�is"�$intriguing-��+per��.vaV!��+Ectness)�o me s��s*( a good whyU val�[.��*see�it even� in a�ct term� :;L, Non-5�[s (NCI)�"oEMy pin�quAJED sad*#L, i.e. (3,−1) crit�� �d fur qua�*��6 WED�jf a homa�em"eQk� ribu�_�dM~A!kK derYa�(s = [1/(2(3π2)1/3)]|∇ρ|/ρ4/3)....V�Ple�feel f�!d>� ,sAmy ��J��!biorxiv~!��nt� 101/A�L.01.24.468575v2.fulln� ��\"� )\�v? en run MaxQ!��.f�Aen��on Linux�0�d!b� � a d1env�!)�n? monoe1G"�*#OA�G o l-n��Eg -8#$nda-forge ] #�A�eJH���G #! �ma Z� S0 /path/to/max!'/10@Cmd.exe mqpar.xml:z

    -� ����;n-� �  .NETframeb�5��V2lem��!I� �%� certI ���w4ay1�}" ��~9��2�S)��|gGUI. A���e !S��Ds9U/U3n�ed cor�0l :v& �,a�1]�&}rawY� � a 7-S 2:n� �1s na�i�&��y( locŜO .�56a!�"�Ft&�! �# Fast Info  0 Path __FASTA__N/B(� � ParseRule@([^\s]*)'/Z(I15p��FJ. F^%Gtaxonomy6D lt;/R9var� F:V;�!)�F>bA�I�#2� -�/F�-5�)�...A�!� )�<ng!�__RAW-�9/6:Pm�� �nex�'!�L mč�$=1.6.10.43 < a/ $ono=5.14�aT+  C�sn me� �1.6V2.�� Kl all�bSpeiGQ��3" $also avail/�4 !i��O���e��no�O�* down  zipe��steadA(� ��*ɲi���y�t��>�-cN* #1uř%ZF� Rece�j�2b�a���Kprevi1 55%)5$!ru�$�B����:��-�!Na F~na��bi ��#�n�7 package�� ��_sh�E8o�4st�t s (I�4�$�5n CentOS��#%G( on Ubuntu�-)Q�7IhR)ker��zr1dA��we (B �)�*po�.toF& quay�--3sitory-, cs51 ?tab=tagsn:t�9X ai���jec�+ �-9�!>io�� no �a6 �e{a9�"�A]g�%�-ed,gl� � a�y. We!��� @Trun_ o:%aa" th (� w�'u6 90 � ads)|:8a�b�y slow' yo�e�7 �)A��)O-"&�"�##3D��ords (Cs) {PDB�< -in so-�(xix��5A�$mat.
    �9 �'t��b^k"�a��9nkQ'�=)Rf-ic cps�"ex77Ce X&{%�6 - 31-38. H�M )��.!�� ATOM- � B� wwpdb� docu� �{Ů� mat�%��.433/sect9.html#fn�!t v3.3�()Ž�COLUMNS2 $DATA TYPEFIELD ,DEFINITION -�N 1 - �6ReAB : � 7;�  7 - 1}4 ger  R(� A�nu*? . 13?o $ v . 1�3ChaIhaltLo�4 AW,�0� �(c�=. 18 - 2�6 � iduee �6'6. 2�56�chainI-�C �� . 2�2�G90resSeq XR�""D25426�A� 4 iCod �  ��(K � s. 3!�5�al(8.3)  x Orthogo�"�es\Xa�Ang,mU9 - 4�R2Uy PjUY:U4Ag547B�zjUZ:U55 - 6]al(6.2 ��anc�O� . 6!466�5� F�? Temp # �?. 7�7�6LStX( uelw ��� symbolf@ght-justAK d. 7!i8�6K� JA��#=�*.:* �WR��B," u�@�/ s/�1ase",/html/DESeq2� n '�,�pedgeR�o& nf B�*�#@pachterlab/sleuthn� "Y�( ?M)per� &�5� geneh'r"R!�s@&l� a�3 rol-vs-KE"&�'aDigns. So~&S4the�@��a b�3pair-wis� parison& A?�%4(Sw< d "�>i}&ex�ed�Jime�D $t_0$�+l�shodc0ke!�!aBqV7G�'_� ar_7n�AUrR 4k"� 1�!��$sin�@c�' coef�(ents. 2,/VA�16�deAt,M@v� y" ooks;&�(g�in�$$g \left(\A bb{E} ([Y_i | X \r� ] T) = \mu_i + \beta_i X$1�t�&v�g5Q (0funv~G�>Bmeuq�ofez�G�t �>vmu�YfG�B"��v X>T"9 ��+sa�ijH�5!;a�"���"I4 !u.�1�8+is equx ��(ae�pon�t�9Fv��LML,^{(group)} XYb^{(�� )} tBkI�*� �eÉ�5"1-GJ�G<rix8�", Ż�#Sŏ&�ge>�g)?&]effec"��urb %u3llJa�*��5c1�%#m&/S'F edm��-oo,e��*�Cŷ_*�"dg)�2���u:U3 rep v each�'>b�Jbe o ��k 7���nX,�D��Maybethough re 1<}!7��!u"1�e�Bk'�� su�G�8r�r? !Ix/ly40 d1�0at��test,nc�+",tal�--� DEGsT+ZF �ZI �<'ConsiPM��&n*�B�\www.ncbi.nlm.nih.gov/pmc�)4s/PMC6450745/"�;Z�M�L�.iew~ whol"�L aliga4 : B�67+XroLC�|+E�|+�8�UE}!Kfig�.A-^l�s (4-A�#f�N�as�anchors�JB"2/��%nesmaii�-;Aw�9,E�oF/P� � @?e��&��0LastZ, MUMmer��0P��# ore&�Ol��3b/�pu�FJ e�set �>+�' cas�1algorith>#ll7 !o CP�py  heure< ("�1�) nucleot�"�tquery1bE�-��sj2s6e-�"�-�K ���"�E1�Q*along �� ES)�++�depenKK�g"�8�in*>E R�as�#v+x��OMr� y+& A�'& �-dj�.��%;��ey��4t graphՁH�Dm0worth�!\t| ::�1��lapv0Dny bit>���de;*cho{L EDNa off!��+��yt � " both�ݡ�� onF� ir!���[mea�e7i� a cr�D@4�to Le �as�#A�� +E� one,B��A��sco��)z�� \$DBNAMEAOaP ere�Qn�!�mputer;"�i)�self, ��B��F�F d --.dar &-Lip80/ex�RlDrive*L_�Fes/A((ThanGenbank:��2l4://jmol.source�!�1n� JSmo�"2%�� - it�6lI�$play 3D.��Xs o�webpages? JavaScripA�\ EJfto �^!�" raBanxon^A�9����5 xist"+G�425V@spdbv.vital-it.chr38Swiss-PdbViewer��eBWpy!��F2rQP(G&yeb-m j) �1�upBa5r��di)�i� !�F�A,Lena3d.leibniz-fli.der�J2D �i_" -�1�sh�}��X��� B/m~TyI8lo.sgc.ox.ac.ukr�M5)BI!� lows�toJ*(am�����s) ediV3*=! panel (�/� fea8�al��k-�A��5I� r2?,))/���V mI9�;�Y ����$��ab�� .2Aav��fd�:�ugalleryn< #!x (disclaS�7am�admin&r M"AE�"�L�f�*<��Q��E-$, I'd sugg$ NGLe6eweb"�s� �}%� �V witc�X to MOL* (� mol U )� �%�Edevelop���rde�^ x.(%n� %��C rginP�"e2ccollabo�X!�i=e.�dY�|H �Atechn�f�$"!~=depra(Xa �A�Jwv= solid�_i� a JSB�i��"P|H H�!� ,��(pg�|,_ ! mCIF. A�'�B�a. Mol*�| iss�<w�7NB=to ��%,5a�ckE�t=2K�I8s (HELIX/SHEET) { ana�,0 sheets, fanc�Flin!s (~J/SSBONDb@)E�!��N!� ly CONECT%rd�Y �&As�ys�>ͻՠɮ java@9 l�\/A� h1?^:I�m� �let� rE�7 m �(a�ZbJ]M�Ŭn�!�a�}+isat� RCSB%�m�.)�UuA(.A,Bngli��#ngr&NGL �,a WebGL engi� ��cold�-)MyF�2\-Z*=ZB�js��,=n.JSM\ &/ 5��&@h, ���5G3DB ��S� a "�$e��� bot�d (B� rcs- 3d-~/1ubqn���#uA\ 1UBQ!�.=

    Now!Madd(%|. exercise:�@s��� �� s goACf�get�!�a�&� sY3���H% ra��T+aq�� A�w?7&�Ws��* lear� -@d (Ira�\�. CIF� I�ieE<l�y�h). Hen� t�\s.+f%Jy �|O�Du�#� D . Git0&M �#�ai$#�;$3 Ev%fai�eas�0d�gso�W/!|�usm�\E"�p�i�U se�-a7J� a cartoon:���q\1��N��men��Zv,q�*E��uF%J�V�3_|_�+n�/�Za��� >U7hedA�;%�E$ ackb�t��"% m��%��eCk� o �QH�R+2� ://pdb101y�0sci-art/geis-�%wirvin�Risn�I' Gei��2pG Vj$Jane_S._Ri�dsorHB. +!]"wSo;A{d e6a�kl'w>Mf9�s I��!ngly adv! �n6�aMc :Q%n��!rco� �&�L$ � �n�Cin&cS�"29�ucV ��K�e��nu�2�= �6n�9�� omme�ca:�d��MO�SBD�.,ks.uiuc.edu/,6 /vmdrVMD!�V3Vcgl.ucsfWS_axrSCx_aXXI� ] Iy ��5ao A�J %��s'NaGpdb��h��Bmmcif6d'0s/software-re{s��!F4�P�Bol#!/usr/bin/env python3 # -*-M�: utf-8 @. �R� Thu58� 7 17:40:03 2020 @author: Pietro NI �V�$plotlib.py !�plt #ma 2pdbx.�* r.PdbxRea� J#��pE1rnnumpyb np # ( openz = X('./1msc.cif') print('ed# Ini�!iz[ uob�+e�E%&3�  pRd =4(Xz) >Vl�to�PSag&g*DataC`3(r (and/or D�Ni< ) �s (�u6;|"�\oI nher�7 rom DBase))DH*A��=) �OVS�p�6k)s * = []1Y�CI]!�(;�erList)&)`��!&%TEL)� ('\ #� \n' ,�"T d clenght$len ��Y�,��nowB��H� ^R1!a!����9:B=�N9 %���nomon: > =-[05�' W�1 \n',a1+ pippo=.getObjc*!�(u`$%5To re�S, � goryMB,�A& IM(!+Q � �= � u�_��)��1�7 : ', *$=TValue V,! _PDB V,04 # �>>Ks id : \$!�=ai=0 wh� True:�4! = B~zi)y7i�l 68'CA_ _id'2@N: =='�,' �6K �>�i) � V�= 'CA':R#=0B CF lpha (CA)�U� x �X�!D.�Wd([floatJ�'CBC_x�),\%`ZzCy Cz&z&]) �oi +=1els-�M-�N�_s'9G Fals&LWbreakA�� =np.array�! uZ'enŷ ]1 lunghezzaI��%A� fig =�.�() ax  axes m�� ion=I3d @ for slWQ#� CA�dot�Yax.scTN0r3D(p[0], p[12])8(p1Wai��B(0,2�-1)q#coaIE?sPine{�En+)� x,y, [�[i+1]�],:"1]2"1F"26"2]�\ax.�(z,�or='rl plt.show�**7&18m�6iisF} �s&� G7/1MSC�n� q ~De  RY����CA�ZDa�)u n1�i -�l ;�!�'in� 6�B6*#2bmRT�*#E�*#Di)%man�Nh�!��]M�l%%3�� �7�l�6tai�4� �,>k�R[R almo�4 lncRNA nSsE(Zheq!�FG N�@ /�D/2018/01/09/241869�@.pd�:�dUZ(It%H"m�be �&=cal�:F�)2"�lemi�A�V maHe9l/a�',{\`; --frm�/rf>f��qrar�E-6 i"�&Q#��re�ve�len� !� i'ba�Vevery;se �Rax��. Mate-%�(r�c-��! �r�th�Km\!5mor!!�e rna-�" nded8E- �a'"��Nts �it%se" �re *c��$6Ks�' M=r!�toc�YiiD�#5 f_u!XdUTP-]"K !s #28�ire}-.$or9�aEI}\� � roseI=[)R1 R$�`>RF�"&�0be�arop+?e, unl�R!Ru"$!k�#�tic�-8�*!�$  sVy;nAhY<�>TieW=sM1m*v)6% �XS�auxili!tage�$aVw �lxB����)�} �B*m2 wdl/blob/m�cr/"=0/1.0/SPEC.md# �-�Z�O4n� �sub Ձ`"�.!ob�yY�b �globbed�o i�� �mP*� 5c�B LD�r�aRa Map (am�5map)1A�_�ˆ!4.&A�>$��mixed �jb3%���5�- ��eg.*.b: Map[k6, ] l!-�=�V�iof_ $_by_chr) � (gwasj�BgNt. , {� nAK =!N (sub2>, @Lfix, ""), "\.assoc$"1 �< sbay� un [Z&� DGCTB = gctb_execut�0_�E6�c�)�6!1�  ces[chr]6*�f_,h=�} }:� !�K,i�!�Vl-ݭ(�to�'�$�F�!t "chr1": ""�Gf1"�2B2"B�p"� &tly culpr>v�Ai�6?r��� |(a�datExpA!� �e0hooseTopHubIn1SModule�@gy� � s. C�aVdo) �u3umn��. AmCGS��md)ye�8��@hly��H@ea�&c�k3(ixEA( FColor� n�!M � ��P� 3 aL��gre�, or 0m���(IQu3 w^� Ks c tog�]�-d!�*)�3?R<)I�;H~2-� b.{D l�k�� )��wh �!`O�S� hubs�a�sumF! �"upm%� sord+ �=�-� �& non-� low-9Gks -ɿ� Yten%0� wco8a1N�e~TunU2v6$low�-�$!q{3&�/r �pronounc�iIT�B�#�-s#.�9c fRon!xpro|Rng!��a�]!�eQ�d$%�f���O:f+rM*!e�or un.�� �Q�`� ��$� �>$ term 4<V{r� ��$�!�� �Mj�he RMSD"% TL 04\!u�yGleA�eV� qAyonk�~on=Q.%P;r� 0�Do&li���!� �  marteo0by�9� (aQ ing)%��� cQ�� e�r�(E��� ing/"A< T�bA��e1E LW�eE

    @jare rmo~cr}d�inF� 6�_JB}a:}24/650"AZir))u� 2_15.^5cF14 >8}0�I3��, 2�e�(TRUE) df #�2� ��C3 $1 ��� H2 $�L0 ��06 $3 �L0 ��02 $4 $ � l50 $4 $5 $ � $01 $3ܭ� �Jpas �iUR��%.�DmY>B_2gs.� ic��2��  ng*�1_2FR ^sub"�umsum^�lag,"%u=�  )) +��.�LуY0 ^�slice_miņ�un;(�(�)-�@# A tibble: 3 × 1� �EC!4QP UV�Tch$y dblE���  }E� eI34J�LR, Q�E� Rv 4 ##. � alO���(�(�(5�(Vf9�G:f 3_16%k-l�f�f�f�f)3Z�6��)8I�B�7 L9= $������������5����~�ei6t �"~���H��e�IxQ����J3&i� &Q� 3F� *j+$2023-02-07� B�(x.� [ 5n� 0 v2.0.�NEditeF>����j�1!i�9 6,�N )3ZH������������NJ� � 4����66�?ů��������8�_��v�i�%In&I iste�=�Urandom�p��5m �,X]�2��9�e�X�flP62Pf��&lrs (yup�&{D�(bug),\~]�j jumb(or_ Sj PDB�Sp=%" al�a 9arp�mis/6 toms�"�F�Fchs��)a� erro"�p���@-�A7r�$����?��� �%A�;-/s�:proxim�lo y knW7t�}—9R\�ab2:��o�4amino acids. RQ�9 �D�ZeEte�A>�$�@' �@�FoQL!pep�K PДo&L;An a multi�OE�nW\7� !ebQV'��w a�lry MODEL�;�R.��@*^=e�� ^E�is 100%g ��AIIM(�}�peo�|� xC���* �b�<p{s�n"m����GU�4U�?�Z ����A�f| nderE����l � m2|P�(�i$n��*%:ny�[5�9f�`polythe^{�(N e, �!`ngs �a��6 �n%8� >7`mm{)Arn��-8(%�"O+I�m�v rshi�/A�)R

    SAf� ��=ojK �

  • Bi~D�G es /n�ahic1 (hify�vZ��ph�s�s�)&��]�>aru�H DNAcA��)��V�c[Tepitope.��:&�-iopro*~EcoiW/9ZB#1UF<Dis�\xte^bA�M%eh9 Q.�MI�pop�xdM�Z��va�*ion��

    ���g!!B LBA�PBMC 3kE]$SatijavMrpF00� jala�Bseurat&�S pbmc3k_tu0�al��;�V�

    hZ�f-���ata�)�f�!�-E[�>o(�*�!ma"�F�^�/10.�p<1.03.18.435922v1n@ 2�W.��8�}�F�q& iB�fig�J.IEprr4s/=_6_"�#+D_of_the_human_hema)iA�_iU/94469r�er�AI�����/t�Vtoo�foo.%)�La"�.(�Os)we��4a� rem�uan-s. +]� W�rW_ra"k�D<ޏ rdzc.of��ldepth, h�$At�-ad�3x� FWIWcu60�0y(super-A&�ar�!"% ���2DDA�� rs� ��D�&a>pE&@%�p�vݢd�-6mp�1o�v�=� J:#�*�assum��v!t5�!$�B4*�>���$ly-�` bulk��~='�K#S�B�doi�ix(86/s13059-0�406-4�8)�o/.�GNUn gre�-&e�t]�d� ���S�1hV� .D!D� Perl��ati]RegZ��*I�s (PCREs� -�"$ˈp -oP 'A� ID:\d+|/(� |progcL�4_id)="\K[^"]+';%|1)-u ?,100933602 ur����v,-III synthasAo� T X1 UROS XP_003755055.>�a��&) -"�s$flag tells .'S��Kp5@EE�A^��A �$�%� Aj dP en s %C �$let u K�3d+/aR"��`$re digits"` \\"| Nmeans "�OoT�K� wa�?��q"fM�E"�!#N"�l� [ I# wcat��=e�UL 1y$?.� ��2� :!2G(://porkmaileK era/unix/��d�� UUoC�� (us)R�zatlQ��su���*zIZ���# *nix geek��o�;X���


    %m��"� R��d���4A/z.�XJ�.($ awk -F= '0c ID:|f=/{I�$2}u@�/ tr -d '"'�Q�Q�#+(� ng���l�9.����c�*Y�t"*0��(Ir,tr "\"" "\t"M{V*R�&�3��|m�\�y`awk >>a-F2\P�Z� � Ig�,tabH�#��3$e �t�)o"8�zs���]Gto ?ry_= sta�bn��c iffu�r�� e��$ -v "/db_x�\"�"|A(5R | ,"/��=|0|� �� ��=2�.|6-q |M�%D 'I�($2)}END "")}'>R��l�QJB�ߢ rGI�� so�)s��� m�"rob2� thanr(e�GcoI�9o,t�I�mAi� T)��IafP� !�I t#hCDS�5 wOu- n I ki�Sut-���q�s� ��d��t�0I�>b1�kb���o���cuwZ]�sr��v�Cj!��':y�3ea�HX�a�� ]K�)�(�0j��)�`in Galax�/e ,�d�1�>g, .�7 io/t=�-���p/x�s/ ryr!f&< "Uni�/r �"�Ok�*�/V2�2r�@us�rF.)!8���I�v!G�3%( confuV is vocabg o;aA�� keyw9V3�Ba ML1�s:(@Devon Ryan��/))@63�xt��ta~"~5�re�a���l��I �edeIA �,��}��jm�~�e��\i2pos��kf�,A �Yv, �� a�PU2H3 findq)�!s"6N# p5ca� i$B*(B]fSitemap/G6�4�� Ge�_�maCfA%��<epہ pasy# pvuPEPuPN��.phrߐ /y��M%+�3c�� c5�ZT-EPDm8!f; !���A�EPDf�in-ho�5He�%�-\ficnٮ ough�:! A�`#��rganisn@Y��YH1�2~��k. G �*-z$ --ld-snp�*M nt_i�f��"��?��YSNP! �_%Eallm[sz> � �ayple.>�8� &{7CC�T�`y=���!9se�L6�s� snp1� 100, 02 4�+ �
    AaPal�5b�K �D�S�%@H-%%Xz9T1l:2 �=�B���j֨lrͨ�0I�lF�E" manual�`aUv��Anywaym&O2f*�X+jR*;pa}J?Ij�y� B#snps_A䎸�_45�ͫ!�5P��~a&��AZV @"*� �h � A� CL|a�a��a�p�&oa���l����na2� roach6!/RB&��o�OKdii�1iuoGre�8"��M�A��8k shif?3:I��hџ ozyg"`y (sli��3cjaX�8Q5ٞ!�A��ߌ.ur���D �f�3eځ�kj��araO�4f��uKh^"anc'k d��=�ZFltf �!�et/�� �fS�>��n�cm�do*�8 A&~to�0!�!�bi"j;;al� ��E#e��havA.%f�ځ�!��:�V�� �"�l�b&��t�@��a/�#<t�4!Fan��d CNV/?ae&al$nt��)�L <"���J� deciړ.ser�fDECIPHE"yeh6�� �://�".%�h itut.r�ExA^�2�jd%�n��Ex7"Agg����sAb um (�)Aae �� .`�s]$ :O MQh�=n�Yek���'ngII a wq�eOi�-sc�(3R�po�:�Ammary QY�]he\ r scA�3 �)�Q�!E�k%p�� �h�p(s 60,706 un,N��dividual! Q�c�?���ouD$�!&� a�Á��� studi�:�!�0 Principal In&ܿ�&�!~���Y��e�s!�! e� �"��Aed6S�Y]A6)_2.��c)�e�x`I��Aug� 2016Ere linvar.� n�ClinVa�m^` #I� freeM&">�,�� �$Pf��!cEAhi��ldAef)�C%� � �ae7�����facili���!oECM���"��l s � sser!�� :�K"Дhealth�yA��hiǵ�Eq� pre*Q.��EUk�s<�(���%�FC�i�m�G pl! �!MR��rj �!��&igna�� �)&��/: Q�����a�.�2�r~(dgv.tcag.ca /app/far�gj#Oof8"� Vari! a8^�� �]My!�nMA�T��̥�.p��A%�>� !s!�bI#! 7�W#� R4a��� J� >nv�  se�e1]"EE��#��Uan 50bp.����J�!�%>F � @5f !�R� �inM�yXrolQm�i2 r[-UL@��]N���[�ň�� aim��L�P1�%Zici%y� �id) Q�e(inuously up���_n���^p�@�ew<$| �d� �dwel�m�ewa*�\��6���A+"�#2} )VNOV��I}�J��% �s�kl9�alq=� J2&  var�+�"n!VarJ+e��7*�7v �I� ca�}-F󙑵t�'�I '� T!�H!����M�  I!RCNV&� "�Ml� up.Cgͅ!�so�> �i�� �x�(/pleJ��=2`/TP53n<W$ ��Ise%L"6� !�69ZeSWN3.�ߨE9Z �J!7 � r"�T��;". m�T�Z�I�d���T�"o�cBr�yl?�2SeG�im���Q {�3�8`� rsID��>�W���/P�i�^ct��"del��"�EZ�"T�y��0]J*F0O Ni�fter? y31ar!L�I�K$ ��d�(!�a�3ff)�9$) d�E�fMernZ�db��Z�s��:zW(Qad�/he1�&�R 2�EtanZz� �w�*pl� or�tA�"�I s?.�� w�Ie ��0& �%�e id?ZiesZ�I�pe.�M�~Ru%G�P�Ala �on'�*kAr�do! ��� �'?es?��if �LwAha s? D�N���o�M �b+d"`G �d�:��� GWAS"����QsϚ���+�' .( &� �{�@��I >| a.$�̸%�HMF.Da�B�}chr:poz,�a�.cio� ,�+�%Jh"tI�"!�"�J g �:0Im���rs�lE� @N :ref:alt .G 0:ޅ:�2�% %& F0or !w yid::/oiR/&Z/%A�wA�-"�d ���Y% ill #��.A��est��)�K�%�~hqs�ށ�FE0h(��+ Affy�ix�)�rsuru��0y �n&����m.iy�V1~,�so�x L�#R"��)�/s8 ref/alt/a�aB-i�is_A�ece7�oq still{  q�����o��h�*a}Z t�T�M�p A:  kd�A�l  (OP}��7+ ���2,��"QH �_yK �*ou���x�+ �� n_ 4`0X���JbA�ied-.�-.7�a -b�achiey�++F%s�0�gi#md�!�E�.�&#!cnbash J[(�(" $1(R�*D()6�*"�-�IF'1 M -n '�(/, A/p'k'vG  |8 's/.*=//'QP2 a+'<%ns�4/,/ORIGIN/{if(.| ) next;�)nt}rP3L -3 � ��� 2.p>.fv)', 3 |t�+ " \t\n\r".& echo.rm -rfg12>yD�S��!n� 2UsM16�`\�%a�phrR*`./Ia5kE`J(�vO��'NIQBP"*K((25550" "LOC�/�)012395522.2" "&B� c oxid1"�&�+4in COX15-2ܦ�ulog" "STLSEVALQSGRGAVSVPTKAAQRIMGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKGMKPPTSQEEWEAEFQKYQQFPEFKILNHNMTLAEFKFIWYMEYSHRMWGRIVGLAYVLPTVYFWRKGWLTHGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSYDIPRVSQYRLAAHLGSALVLYCASLWTGLSLLLPRDKLPETRKLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGDHWIPEDLFTFSPVLRNVFENPTMVQFDHRVLGIATVTAITGLYFFSRRIPLPRRAKMAVTTLLAVAYAQVALGISTLLTYVPTPLAAVHQSGSLALLSIALWLMNELRRIPK":%�2LeXY�gahm��"D�o �y�E�+A�s�7q-� �!4n/�ow�KS"�"�sj&9ޟ&'�4�uA�<�-;JۓQ_{ij}L�.H3�1~��(m-2)d2?�s�-��weő a̩t�<�?[ to4�pen6�, x�ta]v�m�2/ �r:�!!8!�2�,t�� Hsel��(����a��d�2/Jv�)� \|eto J[)=�2, vO��0sum_{k\neq i}�k}\R})1*,!��e2�*��H�!�&�z�& �PZ�_"�$�es=oitfs -S[n+e�U9U� ^{-1u o �hj!hjBha�eZ3a'F ogoz�<em>y dIMnz9b \~ a�JESphy��e�<(tree, 2 ext� 9b( �-�h2 �a�rn ��e��D�o�j�`�*NK1y4iwK.�&5 EaF�y \ !��[L_fur��_."�}es� ��}�aa�a�!U)Qly)H ���o&j?��}kZ, eg.�zTa�j}="9�{ �s�����ĸ!T an 1 es�7� w�%�v�4f_{max_{i,j}}( {�A�Z"we�YL7�B)���U�1��e�F�"�aB� ! E|%�!�1-&� In s�i�buTz�!��Y�"".Oη];{Y���E�0 is '#kill'�w�t�Pv]m^2/2-.� �NA��Nm9�u�i$go�1�r�:�i�t�7l��������3=v�i,j,k� �@rWH�v<�`s�at|5����6N�zmI�=k����7#Cv�է.z)djkj*kIΡ�I;vmj5T� q����Ja-/oz_�EVP�Av�0d_{kz}=max \lA�y,y4z�* �/qaz[YD �i>�Hep %o&�Y2!ziz5Y���5�A I�/M !���)�chV w�b:gy>v35i ? Ac*FA�uul�q�vL9$�nz-YA� �]�W)�i�1�( hEmI���I:���Z (lo܌�6� 2��nd 3rd�s��1�!6�i��th@� ). E!i^G -�% �c�v5�E si:/a*�\��a*��6 s (�  �$�(A@�los.#ca�`>J��0��n%�a�9���) AnJ Gorm Pe e@ef DTU)��9/>}2$youtub�/w4?v=ro2MFmVZypQ��=PLXwjzs_mabFrlRF7uALEomfGGckG0sG5y,�=17n 9ra �o�j�on YTR'Mb@mEX��&k[��A�v�Numb�K����#$%9)��1NJ�Be�!`clut��IK!��u��x���i hier�$�BD�� 0-�H"�,� 3(� m�ox. NJaQ8toiv6���pePUPGMA��E �5t�&ɋ|يAC8#���c` M�^�af�4�d!!� ty�by��6nVW7y �Uck>"  nmh��G� u%pm��E�)�x$Jof7_���<=��C  A�<-m�5 s�;� h a "Bsabnl|�clock"x% Ye�&�9nse�e2�7j ��%�GA�%U�Ep�!�7y��UAi�w�I�I- �ME����&E�~I'e� thelc,aax�i;)U���+#��2��Q0�OE�ek�`�!�Bmhaps)Y!�tkP@ �'X� suit`"I�\ � Dm;�1%�nU�0=�@e 'old��hT�' �of�v& H]%q le�) P��pA@marke�o!LFA�5�� MN.��"���)b=e&/m�69A4e.ve�����`rat (8�W ia�� ��61D)��%��pg: ess��I"��3,i#r!C,�2+�-� ��f$(I�W($�'s��  stop›anL.�c'a�����։�aqk� l�xAQl��'>'m2!T�Oqlnes��2����f�� {%)�9("/#4���i�5q �)�.۞S e��(A/C/G/Te^��n 1-le�!2codes��A:0�4 sk� be "DDp(ultra-cool-6&l- J X�coݷ��&a�ApF�: � -�ile?"x��G)�%�= �ۓ��,ly be, "No."E,������I%)��;١dAo� �n UMI�� =�EJA�E5�i�SB! �@9-4CGATOxford/UMI%0s/�� s/34r�it��EE��Ʌ��Ӟ��/�z���>�+��<�m�Qdiqo 9��*s�lag=�N-B�i"'/a�rom��bRI��'a�9�9S)� e"�7Pe�*�?� }A�>�a +&f�p5ѥ�WH<F5�1 bami�b��ry�ZGsam!�? rt -�y�����R1c�&&yA) e R2s&�,Wri�1N$rt^/�a!:&Dm)���h�-�� each9ea!bs�(�t�|�R1�ints R1:4j��gsC3G RX HA2.A�R/zkli>pipa��roughMW5I!4�9��y>(!�(b����9�-9%>Ee�E�+'n+��y pysamaFa����rustye���$�O�}"AR�S<&���Q !�= .A�<�pbam3kjrb )2��T p!�(bam.�e) !�= None��!�a�bam{r2b"/��Xag 0k{8ign_umi_tag() #� igk"-�G�"�Aere�"'b��el.Ç �C.A�upe # i.=�B�b7=A!< aJ{)P��if r2�8- M!^G��� rI�nyaQ� =Qo�op&�B�YY��ami��T� E��,i�!@s��"E '!Bgy�an��m�(ficd�r�D��: �yjA�&w��coL���:�P*-� ��/CIGAR "U�o�llB$�!���$�Dp�Z��XA  InDe ndy�mis$�� �� u�2�l=�D X �&�t ^u����{��sFw�1!��#be� � Ao��anonymu��u%O?-s 8*͕��!"���F�jasS�g̱egV��?q=tet2�ž�=on=CORE tax_Y=z eb�sid=all ype c YE�ydalr�JASPA�;,�^��a�6�'se.l'ES'�)x���A&Q�co%�upa� TETu�!�QT1)nat( %!8��*,�&q5��.�� F��BpFpBͬ423z��p�]% �>J�ChIP-seqE�G�Ysb �) be���F�I+.cshlp�E^2ent�hpl��t9/03/15/gr.239277.118.DC1/Supp6� al_T� _S3.xlsxn"�k; 3 3�waiAͩy��xe��mBED m!�)��q)l4$K�0 �+��5td��}Micro�{�t��HA�>�my�.MI���.E�ia��RNA%�uA�:�� ��2P. L ���e�t�%rF05s U�L39���[�aenzym37� i#�a�@�t2bia>��Ban+&�%�!cma X.�zXm��x� O�rs. Oa� �E ��:}#zR�ynJ^*en��� ?��cA_ PCR ZCf�8.�-%�` pu~9!\;I���A]�gx��GE7CqntE8a h�r&��BLB��x ��8��7Iim�"er>&If��*�Xlev��re.�mK/.�*���aKw�z�����$� e.g. bad �elab practices, unreliable reagents etc. I hope this helps.

    

    It depends on the microarray andhcDNA sequencing sample prep M<

    One differencoLat I know about is tm`�s can be designed to target specific isoforms (e.g. spann�a -+\splice boundary), whereay e shotgun.�(approach ofrt-readB� makeDis�icult�xachieve (although in many cases� count��one@som�4gree by observ(9HsSlcoverage across transcripts)5�However,2`Dare very heavily d%�ent!�Ta good annotation. The� n on. tect exis�!�5AAu0so it's possiA{)� ultiA!-�s��ed�a1�M(wasAM(viously bel!XEbeF(-unique, or gF picked up^1�>�is noA�� ed at all2a=5)Q�q( �libraries) Math::CDF-0.1 -- Generata4(obabilitiesea�$conda inst�-c bio 0perl-math-cdf </2=2 4p>cpan INSTALL�N9p>Ta modu�(ovides cumu!.v>�4[P(X <= x)]! 9\[given p, returns x such)�.: = p]�4distribu%8)�� packa[p�a%* interfaA� o DCDFLIB �Xp>h�\ �code>�� lsam�Xs view -H temp.sam >2 6)&<| awk '{OFS = &�7;\t ,} {for(i=1;ie�8NF;i++) if ($i ~ /^RX:Z:/) {$1=$1"_"$i; gsub("R","",$1);)}}'�:�-� (s) E��. ��� %`2 GI� y at) eA!w�+%��+ZV/�/� body��dj�e� sens�%R/�4right-handed*2T��^/��32.7°�� 34.3�,60°/2 X��bp/� 6zD11�(0.5�*��Inclin�of bp�� axis�p+19�O−1.2�.Z�}0Rise/bp along��2.3� 0.23 nm)�� 3.32 8332�9888.7��PitchEh!�K��28. �2.8��3 8�.�z� 45.6� 4.56.8�� Mean $peller twiz�n+18�l+16�+0)��0Glycosyl angl�\����*C: -(,
    G: sy����,Sugar pucker��C3'-endo�.2�.: 1�G xn��D ��2�*2.�)&f .z<1�$1.J#/�/� $> �� Yp c ques� is :i(mu9 ons,�er.or dele s)\ t o� �du�R 4molecular clon� proces42n

    I` ed NCBI"( �responsyV�For n al@ etic variɿo'V'I ;� :�:Y'Vficial'J^((lab-produc����c�!-en �misc_� �'�:�,p>In summaryD �0scenarios its�gly!" >Ss')�O�', i.e.se< opA9��1tw&ent. �')tru< yA� @1"� ichange"=y� ntenmal,Uy random2�/A�un5�sQ�M�. FinD� �s��� SOME�'�s'�%�reporz in�m[M�ul>

  • E!(first i, iieiii-�ppears� be �corEaf0stuff - admin�E|, (�-N� thos� bmit?.Y��Not+ oq�blurbV�Dncbi.nlm.nih.gov/g � omes� _9�,/#disrupted_��n�"#�,uʩ�.u��:dDe:� o frag!G� p>Sim$"�"wEb adja�a�nearby$q#at�!�be �"!��(a�mtein. I2u#Iind�e(�" �lem)�A��Au/e�& #A�a�9��thDes���xE^ stop�on�E(I0ptual�#(of a CDS� looks lik+b�� CDS]A� �s�1%ue to a- et��$� clue�c���s�b!m �a=�ssembly A�facts}$�)eA� a number�wayp>A &%E �/pseudo!�5�I�%]%�!� 1!�?. a+,is.#l rE� NOT�"e6 is a t FI pe�2�� low, i��$� CIS a C ) If&0UY�N  initin en add&p 9 w�%� l!N�po as$!� reg� A� O%)Rqu-.��,!��A7 !�dr-�!��is ��&�9,��ex�'�:� r�  1 200 �  N phoAv&_F+ alka�$phosphatasjb locus_tag<OBB_0001fl)Mf %O non�%al du�$frameshift:� $l�

    Ov�'ew�$> C�1u�: diverg�� betw m�� L� vJ�)��Aqe); �( �p>|aw- (��)l>a( F"k�^b.^�" D � eor�alFW�(ac��,� tedF*6�/_ �%e�� Rea�. ?%�!Z � �� �r&!�)8log(�C ; th>*��%�a� �j Gnh 9 ) namB.c=�v��!:= @ i)P 3>Sh�"T u#QQ%h1YW:� _-NGenBank)Vq(-W� �verK��5ilyf incr ��Q9�&� �Y�: A new6� consa�ni AI�Uy�reA���(�m6� �-b key=uD(.�%�4�( vant� yo� s 2a}2.�F��"�o> ���M�&M�Dau^�upd%��1m��2Y�I9�?Q=v;%1���if neY&~� h3>L�vm"$h4>Q1. How!��l' e situ%�!�%�"r�/�s�a6�a(anQ�h-�OU�(?

    8�Rkey%412..433Z/>V� :�

    F�3!���abovex ��)�$ ambiguity!`t�����ױ��de()�U�.� M��Ybot�6�fw2�=.A u�!RK:/�,!�we�s�7�y\noN@N�{!6of1#.%� � p>As5���sayat]s>�1PVQ_��a����Ii%�A�ly�) rify�-DEsi@A8�A4V�(. Fur!�e]�"l -4�9'+�a  s�(!�27 enle�,m�car�,:��=.= a���M$us & >�b�R|FzAl�6�%d ?8E,!9�(!Im Qq (v"�.0qd�+, t arY: RN �; eref!aT�i s���*"dHo�:��:(;er-intuiT2,iAM p�<al� searc�3��I��<amo�<����2*>:)Lis suppo�Pd�� �0"i��Ar�aWY:; ="� �Hen �9.5�)N�5:An��.�66go^� comm�4Q<ed-m-@y����:�e�2ZisA��;1� hygo� �.gM�5%)l o ans �D �{�E�2�R� B&nu$e/D90147.1n� b1�9I0�I� ��r":J 308..310V��  mucA�EZ,* conflict:u�r:ci� =[1]Z]6� N.�7�Xd|Aa�>� a �GR*A ��=rl"ed�]4�&6��uT?&aA�cUs �.�Mo9��MKVDIFESSGASRVHSIPFYLQRISAGFPSPAQGYEKQELNLHEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACIHNEFTVKRLLLRPRPCLMPMNKDFPVYYIDPDNESVEIWGVVTHSLIEHPVCLR* S.�-����^� Ref.J|pubmedFK1902211r�6��~D!t)4Q@ >8&� ,�'^� .!��9J �)No.��~U: ���h; � Ŭ� .<Hem>Escherichia coli+� uidA �� 8beta-glucuronidA4 nt E413G,J' e M21D��AM180563�̈́K9���B� 1238>�.x! )KB&e"�#ͤ al e�An�<noa�iRetails>N�$edZl��bKZ;z6j:@B-��. Ac� GUSZ6;a &:<2���Y�C464RU�4�4��Y�4.R�> 139F �� ��6�z� � ���� ¢>ciR�.Se�'so( �[V[Y468CU�6�5��Y�5.���Z� W549y��6p �W6���6F�I2� � 3" :�� $KC999035.4� � K�37�..5 >6�TTR�fd�&�T[ ]+ ISCfrB &��q,l� wo�(�%�KposR�$pr�(s.1 firmSX-F/Krawm�.V�p>�> -k ��:� ._*"9� p�,C� ."� 2� � !de� �� I�I�U*k����Mp[3 ��!�.��[�.� mat�J*� 6"��1:q'notu! (m�8 Ui"�#� (�*y "! toQ 9!.-re�*-�) �,va�F( ���+*5� �SBor; in E�3, 'diw3 pancGth"�nlI�T5>Lu���A�.�in""�"1b6*�!Ga� )W&$)�*OB�e*�^�g�F�l !�P�"-� (.Q�A�>�q��1�PtoX crib��!�Q�$ h5>OS|"�!T$"tN& ���?>�!o6�%� �"t2� de�s�*�M5qB�DU�M�e�is�&� ��V�$NM2��2B�%6�.�$gGe!�6���ThR)V)PHY0b�B�,WD:�#�1ai�g1E!r�2&#�c�*u&rI��5 �-Sobb�.�FZ}JZ. Q>W mere�3n� lete). A6&�6�is�5T}�y�"�ME��d�'%�2��{�9at���A4�9E$1 �rpz�remA5qN�% D�7�+M"�tr4�2ges.. Z�%2"�% keep )of,��+�"�:'w�9��3s�%,'uSmad.�%V�(����1-stamp.2s�2�,�field�AԽ7 ��4history:U�J1'm� W �� VERSION�G~-J�A\V+�?/�Macz' ion.-Y�Y�3Lq=�z-21*is fixa�n�+ N>).I*�2%�ߕ�� T=%�Se�"� >|RR�!4�W}�t�Ng "-�#.*B� R�F`���mP��>�W��RAi� ��EPI6G+�wU\n ��a�Y A6�. C�<i�* 5K7�0 ffec�Y�5�4 (.��+)��\�6� ��E��ids��M�MJeW� \.�w�1n �Z�B��pro�16�! su�ov�Y�wN�in2���sf��=Q&�1�' h5>P�k6�B2���lF� (0F%1!� vs��1TJ= Fv-�ʽY6�._5.aby�!-p>More=[%��A�'v�$ [s (!���e�;newer) d� ��7B �COMMENTɑ �ir.k�Ler���/^X�V� i >Qa --+ 3.4.2 EB,Organiz�,������I<.)0�2-�� � ��3F�3p>A!�2�J�1� �2)�� ]1� Z 8ntA9��u�IP AR��^|q�)a.�6#3_(7Bdee��^�U]a`�>s ��ed��#a�,�9 "� a7 I:# mY%!M�t�C# ��'E6a*�%��{� XP "� �"4`Roe���y)�#v.1A>�"|�ie �ic� �4m�IR2��1 �>�!�!�5��2��`*M!D&D�s (�9�,�.� 5y...��EV�V�:^o*X%2�Bl�`� "JG�6�S(,or.@,� alt�-��u�!�.�Fr refl��) ąx"� 5�{+*�t&�2ly�&�*6�&� ��jOAe�a^'*�"�H2A.��:2g<�Be��U�.� , 2b!�*�:S&��� ��^��#!�� z�A�B/ i�� ��5a�%��3%����h3>Ad"~��l;1S- E#� �"V ��i ^]���^Y�>��g ��a��.R&@�g'U46667?�%=girev!�� zX=��S NM_029716��F�f[��331��^�V[�Iciled��"�[ce�8XH/�c"^L��4 p�4��usxczgD� �]keyt(� �3"z� �: to�6lin�Mz l &�ofO� �A�Y�*:� s�SI group3�RG�"� a�G � help� ���dinguis�8�t�$e�s!"�d*y0  to uK_P4%c�!_* ter5Ef� �h4>Se���:)&v$V�83b�8�B!�bi"�>�/k_.�I�.K^�3!�!*MCaEha>en asZj��8"�8�[8�[82[8�B�%&�6F� �-��8��8��8��8^- �-��8�8Eo���Q�'��r�D ak �<:�^"! 2����ab 9E�B/!_�m ing n19�"� �ᥚ�_vagGDNA�EZsm 9 �P�J� trait- ��Csis,ZSb~M�,,��jGb�n��Nm%s�4��ZRends; 42me�Mut a�goJ%is^RGO ted.>&� B� �: ~:>bь� ��/g"aqQ�K��Z#� �?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?�?&?OV�C� 2<b���%d nsh otid� �9'o.andZ&�substitu�47 b A�d"xZJ(��Xmo�D*��g) M�A� s �hE=<2 s�0E0E�� �� 6� ryY �' ��-�� �� �� �� �� Z� Z�DE�� limiaJ��ri�AvocabK_yegZNq�jabb�J?�|l  �{.;rzD 2I�9��:C�VB� Aa�isf ion; ^%&�;hUZ�; OrZt"w2["�$- K.�-]�t�t�tRt�B�B�B�B�B�B�BeBF�Zr:1���"� Cv3H. /H15�� zZ- NOTEiP (&O��*#\� ies/�'B-9 � �(15-Oct-2007j�"@�8^�NKZ0s b�ws s@O/;��s �� �Z(a�;J, RFLPs�b$lymorphismW tc.)��ZK%oJ�>q (f# �y�.�J��N�N�� �� �� �� �� �� �� �� �� � �:ʃ�66�<�� z�Z�����#s� 's,�{'1ilyZK!�.�?��> p.c;��O O[:_ �I+of��tic2�"��6 OZN��O*��d8��>/ �:�j;!DZ)�&��!� 4..^.:*�*BHO.t.�:r"�$Za Q�^ � 2= .�OZ$IB&�!d�!���Vbwma�Q �2�_!Xw +adh1-1  �L(�3l"�%-�s (exon,�F etc)�a �J�EQ=shX5��s�9]yueR�R5 �>0�#,!&�;aN��dJ��� >T;�OlM�J��Y~- ��-�U: �NI&�t,-�[ntjE mVbB Jy�VJx)��� ���5 �|aM{0lambda-hIL7.3b�� m�Mtb|�ND=.�'��2�#Nh-�; �g�_�*P!��%J�"��s�_lL� � m"Z}bPr��)�� 3N�R�_ �DAZmh��$ng public .Z� yN5"�*�F\>isD]s�5J �� F��AJ634337 E7Q��AL<e�B)�4-5i��,14-MAY-2021;�nu�N�aƉ Oo�*&lT1�:>�Ō�~NB2� ��e���.J�T*�i .@ ���6ei�/aJJ"��a"X�. MQ�1nJG5-s�$�19Ro;a���3N:�l"q.N#�ps_#ZSe��� -sca�P�3NM�+!ls,�2h SNPsnu�"�v4Nw "�}dA�&�QJ5)�r�W�Des�q�, �g�!co^,oJ;J��!s� "�7��;W� doe�J9g'��5�^6n����0N�symboE!��&*.!�m ���%֝ �)�ilv�"BR &� &�\��&C\J�a3jrer-�Sli�Ysyste��cOV%�&R^E<3"J���uassocio!�,I5A{E;!Npur�T%� F ���)Y�6�]NN�B�� :�1-5�a ters�5-9 dign2 nteg"_[.&6^B 9P hABC_0022 N�F31300fJ 3O1iq�7a/�f�EI.(J�:;-�dVa����.��A�>�9y�C3�9i ZI(Vb� J�]+xey� a~;�X ��um�c�$JP>�� c�e�at2�Nk��5�10�An:�t 1�foN?!Az��CT4R�If��Cr�%b�- *%>6�'J#�>&G Eato�o_Aold �6}JREEN!ےKoz8at! �$mb�@ "�JQ�~vb:&�>-�!q_�rRuerr�map�8�aJ2 � mapV�&�?-�� m�A8q12-q1� :�L� �)��0N��OSY�*q&p2*<��t �F� equivalx�U �b�I!I*��{*J��=�. � iguou;ps����TfiIyn� �)�x��]5D0ngs�p��m$ ͻtexN:N� �)Wlac j*"�)�35N6!+fԓ��3 �jB*�6e�wJ�a phys�;,7/chH��*r beha�I~cha)]er�cA�se4uJS6,u�p�-s,erythromycin��iɏ��02&/K>U*J{ 3N�.� 'RJ5��d!�mRNA ofJ0an 4/Xpep�$�u��m�e NS&_ #,��� �-�trypsin�-)y (� ���w3B1[ �N�gV[�Wma�J��qXYZ neA�"���Ev�Jy��!��fD4/��uJI�.*&*] non-� al�]"el�pE�>^1J�non!�B� �>JY2 (�2 >+a:�J~� -" ��v;&�%J/�A�JR�3noI ^�u y n�ugenis�JPev�a�>?MP�iny"�� $Ny�KNKIS�����e�%"*g1{!=� J�1�Mj����1�fz>taken�!k CJP�� roll��6�%=�nt'�B��Gu��!m)J��$�;�f!L JNh1#a�� 8 "�:J6d�Wun2 itary,@ eljun�y�TZ�%5 �J Jy=� 4��6��2�i� >e�Xu��� dJ|1va�8J�f�J��s (�_:/KNKr,-JJ�?-yE):�>5�0MW���en�r$�:s�bH ioN����� ��{ebKT�p� %a0� eN�+R�g�h�xlo��n� y/�%$u��5Ait;J}T�}-J A-B^.N ]�n"�Xp�>V�)�Wnt�}� duplDKm��acȠQgf��J��!�R��FP,� }d��&O��hom;����>ins׊s,"�A%�Pi����,*�|D��but�=%� wa4 >(indel�Jg��combig���"�WaoraainR��: a (-).���R[CJ=po"�q�im!�an&��܄=iEnH�JM�y#֥r`.�,��(�e�Va%�97(.4�N,MHC hapl�azR�ic:sR`�)�%s �)��Y{�L�7�V� U�) n��"�:��29N��ʅi)c�2 �N� J� �,v*6 2doMF Ji�s28��G#@�!���/t >8X(M{�J��� �D� )>�� .�F� �� ck (a�)szis, I'm7�T, BED(pachterlab.�io/kall�T /downloadn�DK -LC�Bc XTcom/COMBINE-lab/salmon�MsncS+atomntpq|�� dZos ��E�&:}C� R�i�Bpq�e��R�!�utDZ @pI5��r zT��aq-�b&(�doQVntr�Hyrnaseq:�Cn�n#T @%$� ies:����yDde-novo�H��d ޘwiki/Ge�-Guided- �-�l� ome-Asy�n�� -gH�p2 MtX��"I��3Q�/I? ��pT`2�!�-I�ul�&�T� �c�b�oU�M: :P2�TstI��t)|ȩannGXtus/1565471892840259585n�now�#�ds� Bakta���wT�y�$�[Aro-� V����0oschwengers/bbn�!r~@�)?:L� �^�� 0e rapid &A� iz W"�%�Q2��� plasmid�3�{iso�3 MAGs�x"��db8�-7o, sORF-����"taxon- pK&dD��Um�n�,adet JSON �6��:Pt{autom#c s��m"� �2��Jh�It��t�B ��cellrk�r�& �execu|er*�oegTrɮ *�D(chmod u+x [�2�(isilon path�`]/#window| *m� re]/�-3.0.1n:���1���W ^&*W�Tac� toh EB�* GUIT�G [�bIKv�lve�~%�� �T� �RE&�F� d tr� !�=AS>6�"�eLinux^.�wor%����Toron �� �Sy��rday. ��Ӕl �p~2�://etea�kiM�u�E r�ETE Too"a� (I�b��lo�vL�.̩�'H��#26!�I�pngM���.u� ete3� Tree,SЦ,�TPes def mylayout(node)lk�,ode.is_leaf( �_O� = E@.ImgFace(str.spli J.&P, '.')[0] + ".png") #�W� !��!�)cep)ales.�tre7q�"��s.add� _to_�(�6IdeBlumn=0�$.img_s!8["size"] = 0 #�cove_� e do�bƁ4s t =%J(("tree.nwk"!�1=3) ts %j(.)b_fn =5p ts.show%b�FalsesE>labels1|+= ��00+ 0branch length�~A�yg �6��/a=wid&΁!'s t.r��r("�S�I!�, �)$< = ts, h=3000, w!�z��;%!�fidX�e/dimen9U�=�e�oֲ�ДC:�J�2m�+i.s�(c.net/Yd8z6��=".�a�凡KI��. a� ogo���Xupi Ax�tm�aF�ed=Tru"[�to V�m���joo���1xr{�e�-@CW ��8�R PaL�Eu `an s&V li>DEJ@Hi��icpl.*Us�~� �sub�*�1f��2I��"�1���ZE@7" �����try� "P} �nb ��trial(�b�� num_�fs��6+ݝ��(>/= = I +�<(i + 1) +'.pdb'�Zprint(:# i cmd.��., (i+1)"��+sync(Ncout=2�= l=2.a�## ***&* .sleep(4)Jhid��M &�}***�sBxpymol��� $x.php/Syncu}�2��l.�: floa�E1.0 �0.05)uj>� G� n��-)� �wa'-;�lAnδ ��a��� �� n�� ��ingqj!9��� il2) ?A��u� HRt ��Wq�7���a_hP�� ��� �~its:5 assu}"e�Uly�XiP��rm�@VC�!2� �la�d\_s �_�y��e2 ��inu�ayi�j��D��� aQ�r;i�2%(b�C �dp�%�a 0/1�*F�&e��us)_&�V�{^W �^study��!��V;�&* pre5)v`d) �%��s��� bias=.�VUB4HP�*soF�:��6�malari��. )�K is vas�:O9�q�SK�ѻa�|UXQn�� A����3t�!YFIe��G�e�>dichotom]O t~ �t:��A�97.%��!���|�^un�Hp>E�S���p�����ing�WE�$alconer D.V� in �M(�to MQ=$ste��8�incX-c�j�|siv� An�um.h]Let. 1965;29:51–71 B�Rykpmc�(s/PMC305943*>�&� ~�H����p>Ta�h�� ` K�$alpha buil>6�. It’ ! oDGrogram ���o�& ` —�+�a�*1� v1.9W� 5�t�o:�#��j@U,�o'woco�6<��[ �I,=/�� I5QCA�capF�m(B�B��6�1�D/30/12/1767/274816v��er��Bq!�b��uctor���s��c/vign!Hs/TEQC/t� .pdfn��*tp>Off-t9�eM�8&�]�)�in56&%�s;�R ��O4s�b"�jenk�"4� t>(per�lpur"�2y� @swbarnes2 suggestMJA�Re��a�q;wh�A�pr�m No> �ooŲ�lEx�@"~1�#��]�X�YI��*I<� tech�3%:�WN*�ly�cto fig��� selfi4�_A�� t�a&��QC�;(�6e�),�)�onQ 9 i2���q4�s (sor�&��� a bAYf eff��@ex�.� �.>� s>[FKILmxD2KJ� ~TE�T /&V��sSqkS��E TW���M�Il9��Bi�60%-80%A0m3.9ad>_y`lA�"�� Eo-apdt,N�Hop ex�$%��I� �5ed garb� M0  ��to.�0� \�Kag.=�a cbv dogs�1����ryeNS�AJ.�`OÕ�Z�~kw.�c/p -vs-r�ttE̡�bA��Ag��DREAM^&l2e� petv5)�n �$f?2�Jrd�� solv!N�6�� h�n&"��ML:$://dreamch �sű~�Z7�)�N�!R1 �?m��on" , !� s. A� ܡHE��A���+?, 9a3.� ? + A�.delim:8su�Fh18��wohseMIfm�y Mg�Mgfh Mx1��U�� awk:� � �a fair��  python/;as �  (�! tab-��SAn1e].�lCHROM POS ID REF ALT QUALA,FILTER INFO:�UW�FU SR FATHER MO DAUGHTER1 2 3 SON12Fsf�l��lang-py| tty�-/rride"u�(#!/usr/bin/)7�->�0d %��d.!�_csv('<.txt', sep='\t')+2N+2B+ #A��` �� T shap}s.2  to e����C�DN.ҭ_�:4s(by=['POS', '%�'],p�=1)W3�3 ches �3 � � at([Z1,a 2[[')�U)� 5�. 2. 3 !�  2']]� x.to)ee�d :@E+dex�): d|��d& �d �8w,B�a>�$FNR==NR{a[v�1��2]=v*8 FS . 12;next}{` v;0, a[; $2]}'%~1.vcf 2 �? �: a�B�%���out���kS�F���I��^,�t*w� ar�.�to�)�B�E݊���ֽ:\IMhf��nܰE���umn"��&'a�ɮD��� �"�"3&%�1_�4(cut -d\ -f6-2>!�IJKQ&� hole {e�{� X1���%� �-2-n#�Ofqc;6� wJu���c�%�� 9Y�o=��F� -o '1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 2.6 2.7 2. 9 2.1012mO)?:��� �-o�op��@msek1%2�!95for Q1O)8�+�Y$numpy.+�int��@��1er a~/��V �N�1�to 15 nP�xtYa �"�K-FASTA%H ��'�mad�~Y��~env� �sys �� np L�=�4(sys.argv[1]) �0>2])_|3_�Grd(�y��, �Cp��e�� = 1wh $ <!(12 A new_% = np%�o5�(r + K&A�<��lea -� 0=6-�!-Pstdout.write('{}:{}\n'.A)at5�9$[�:g]*�� �rD +!8 )u"���% 17>�G` �in �if.��s� ('!&'={$24! 0 A��^���.ra}p( C else�I+=:, r����'&8T�ei��y�,$ ./13879.py�"�E�in.fa)GADfaFZF����is��t`�n~ l,�eB)2q�?I �؀k���pine!����Uf7��i���be� r>t[!��low- (1kb�3��.-,dso,�enWF�B ���fx�.�p'i"����>؇.@�-��(16 kb - 1 ns&�<1o/��m�"~*"�*q�B"-Y"ق�6k����ar!e:�(]�)a brea� )6s�y�95 s le��!�1kbe�ize�6!y��o4at- ^ U"E EDIT"1 �~ a sl�|�bI�)������h\rv� � �A�B #r�mY�A carto�&a��lp illu.5�� . Le�� up a2���Kbrx�))U�9? }� "��2�� n- n-ѵ n |-  |...- |F'WeO$9�unluck��a�!���Nu �-1M}��!(n-1) &^�em a� D 20]N 2�aji-�}4�g(>7oe�# o�. k �� R�Q�n ;�1� ���%E�E3Id�,A�n a�- (15 kb�A Z� � ܦse�N�Qqi� ���>)"��c�� "� *$it�� in�'s 3] a. GlobalsN1x_) ([VEP6�A���NN�)��H t �1= �"� "*g>? a�� I&B� BE ~j� E%+RaF�+="�[}:Z&�f#"�D�C!�.� eOuT�a#b1�V � measQ$Q�"N#�-&X >n -n �L�xto=e�*  �* #��.� (!  -T)!>������U�!�� xF�A�� .C AUY�6�V7��"� � U� - B.N#M�err� Ino � Out "� hY��M�N�Pa_B��R ��%0s(�aF&"� B��R��S openW 'r')�if*�.2 inv,e.?N ��%�>n�.5:�2#6+aB3"����E>:_lGsAzͶ� = {}�!��+seq��$[i�/ .get(i, 0�ic�) o�(6*0, *args, **kw zA� (d.�0 L:(>9� ! ; p��Q�&� �.� GMK�P��W%� ��.�� �rztv �.2��v��:rus�fnu%zV��100k `+r�#-H =-Rr(2��_f2=x#Zit. ( F,� ber=�02#�(:�1S�d))6_�1 __ =�__!�__)5)�F�F� IfR= 6 ��d� "CAunF���&3hsi�+Kusefuw;)�pw]! well)�

    B ��(m�J���ma})s9$W-�?H\ for��-�(a���!to zero(�b"� +' H�^1 ����dact��?,U�"� /m(&�h2>h � :, ��1:25-50 b~kCTGTCTw TAAC C~:l:FF: ,�~2:50-75f~CTAGGA� TGGAGC�� qF�~3:75-��b�TG�GC�C�TTCC +�)l,%t:),:�4:100-12r�!t!�A!�TC�6� �! ,F,,��5:125-1n� AATG�!�ACATG!�A��FF,t :F,,����h2>zi�YI�҂63��u�3.�20�ʃb2�).6E5FF)BI<6D  ��1:43-106f�!�GC6�.Yb�a�G �e�2�.:A>F�� 2:87v�a u� �a&:+z�y� �A� Aў��1 am�(ju���G�� is. �$�_�%!�+)�� 7j �' (�&Y!f_�� "�#W�aloo��k"i+l I/O�ra\ �wBA��� nsiv  gue����7//im�C�gn�+�OD$R�q�Q. � �ab�Ondj #�%%�KsF���o� p,%�1��out_st�''r�u%(0��n(dc1)dc1_l = dc2RfF(4stic=(.*)\,.*$T'hr(ks_2g !4_l,))�1s += �A-[i] A*�<d�:m1: x1[0 %n';)Y�( hJ�RegarYA&memor�ZAle:Rm5,�al�>32�1*6of R?mPl�:seA�iUi6@J8eb.mit.edu/%7Er"���/i386_l#D26/lib/Rrary/b�$J/M�-��*I#�..y~�w wj 1[���IUɑ@ 64-!5bU�of �E!��)  a 32+9`�Z 4Gb: . olde�B\� 2Gb7 .I tI(a�]�OS)]8Tbpd�<�u&��:"[ -�sIE.2h8�a��Y�*ou���_w�"F)�� s do� B �{�+��A�R (10G�)�Qm.S/n�IY-'<�4~x�'re R�! r(�D!Xdd r ��?)�+�n���>8 0rH�v�y(�) d�lt;- �/T�<./PS22_ECFP4.csvIW.[,Simig<$ty:=floor(($*100)/100]U[,'KS Di�Sce':=z# ly(1:nrow�),$��(�@ks.: [id1==datv�,id��,~ ],da828�,id�� ")$�B ) �> :=NULL] fE2�, �./Mm�7N9:1 p>Edit:Y�UE] roug H!tF���row�js�B�(�A�2/A�id1id2eqn E.)-9�"s5�*�2 eI���1Usb,sed:

    sed 's,\([01][/|]d\):[^ ]*,\1,g' file # ^2^  &| 2|�| *--- applies to all found pattern ibC@C\print the content inside(parenthesisb� I l any character except a spac � �b y��be kept �2mJ< substitution

    You also may wa�o forma)0output using )�column K, command:I think you mea]dse. The amino acid numberA"hasZnged, buAD�at happens as we discover more transcript variants.��u

    �����-^-696-2!-H696;v=rs12713559;vdB.6851457�.�.�/)/ Explore?dM[g=ENSG084674Um 1429!@44073)@444678>A 251617275�A2A��~�5S=�3f�.4are interested�� ApoB geneu�)can�;4

  • A�$s!�bablyqn 6i�����% �� ������i p�8I*�Ancoordin�q�H"cytoband" 21q22.11� �4�dsearchA�Y KB�SUb"�?hgsid=791314831_aE2GlksiE79iyiT0FHCRXDZcFwPCn�UE"t�b&E"ɾ �he pL��seE(Ds: Clade: Mammal �D: Human assembly: |4'F��S?Ming t|V: C&'$Band �: !N�P: "�chr21 IK!L mat:�#<�W>D�le�p(�.�&��)1TE  ���rW<Q-�� �%&'ll-)"M%ܩ�5)�Lr�A: I} C��Tr(M�k.vmakeb� "/ba�9 se^,� marker�74receptor–lig�pu1,�[i�2 o.C,3cell–t, ��>y�7$structural9���{Phaematopoietic immune(,�n=)! enrichGa:n^� among6�2�j1!�b�:���l, (Fig. 2a). �%3�P�Wll9 2yY�5!*!)~!>s. �3w�c�.��W)�H|9E�[A�at&m6�SR�A�i�wY|<4 ?A_. was0 a($th�2:�nZ] acros�=%�s!Ksher’�!]z%t41to obK! P �4M�odds �9fDs&�Y�tS ‘feVD’�rR.QYad�S or&� �[& Benj�"(–Hochbergm�,� �:�1��p. f�Fqlyb;gn�7nI��a� ( 7 ed P��0.05)A~L � conn�G_dg�'�5ne6;�k raphPA�N���:}%:�(In ad�(!�1;!Ps� �e�(as�y�5!�previous��)ij�A�g�Na QreK��AZsatuOm�c)�&�Oa (8ly cu!;�8fm�-re/da�> bs (SupP\014)aT�>�Eb deri2b�rmalizA[�Ues�BQ�!2�2G�$�D.}J�!�4!�of biq;hGly r�R��ah�~B!n-�0!�b�� om E��R,*� !��-�Nelsew) ay!��z  $I�  �)&� 7RI��nks�Kc f7� p>I�;2�://json2��nxPB11!� view� )u�"� JSON �;<�� �_n-�*�0/_E�e D_ja�/t ��ke8[1lt]d �b4 of DataFr=g�EZk<x!X!��E�n< con� @lQ:M� 'le��� �df. B" �*�^h ! panda pd N�('�9..')�ff� `D.�(f) df�[] �x�Df �X�Hd) 9�*pdT9�(d[x][')O']�) dfs.c(nd(8f == �dfs, i,_%Z=True(.to_csv� csv' Sex=False>�iU % microarr�AQ�!��IDtroZRE98 I amKMA�8Aea��A"� &f%m plat� en�q�>'ic�AtLSpe: I[3a�measu�)"R  L@7L?IrEXA�� � r (.s<s),F~!o4m�sX >*r�>|2�m -dynamic���!4.62A#)Ms�alL1s���Arob�lt ��|*o�<e:�sq*�AbJ " au�up��-r9ed%P� c�n���xH+J-�$a��af�a combvg�n A&͗'�k-q�'5j. "r@�(�Qlf%Ss, 'up'�'�'!� �[�c8���gb��"�7ilh�O!y��@ La�magnitud���? N j�[*>%)O�i��#�,(a symmetricxWrixi�A�inVcax& Shp)�airDi�!*�t\*$ (u�@�*ak%�APc� l&�>�s at�%x�totalN.�c .s�r�GQ�>�A~�>.�Lyd$l�@N�3,en.wikipedia�Q /Jac[&�ln� )��e>�V_tS%C3%B8rensen%E2%80%93Dice_coe�$nxSø >-6%�, 1�0�n{".$�1 e�U IE�s�*kd�E*qrqa!�R B�bio�3u�H%J�#/BioCor/n� #� (Disclosu���\A#�;��i� H$) w_u�*'!�� �"�9 H���T.�^U� \]k�eM�1code>mSim' &�� � a.�qa7 tmapaIc Fhe E"�aeA� ��5e4�$�jofej�advicm�?ought�Hu?+�ic�Q� AIf��,plaN�I�[�-e�$' ime gt�liqqll��un�D� ^�+ :avy!InIUo�HperY x&%7 T-2�ZA �2� . HOWEVERt�Q�@o�8�a�8i!Lbi2V 2�is6)�Q#d, �livIspleenc!� aP%�aG%�!�eCR�E�� �lcessuggesaJ-!X1-!�%�5l�/vPP�Ha8)<�*P_6�a!U:�< � ty!��X� set��)u�kA Q-Q��Ss�<� 2)Y(a�olQh��) Bli>Homo�lof�7�p@is Hartley's Fmax� (5� �e� ESSENTIAL=()i68%aA� �"�.l#%�±1�/nJP devi��ar H; mean, 95%262R6nd 996)3�DKolmogorov-Smirnov��-9eA�ndG3�En��J�� �or i��t,byj*elf��z� �G �>�Be.Tm��[A �ah!�)�et*)eep�"{63aT>�=Ebo�c$ .�Mg��-{ed5,!TA�NeD �i���^s�����se I'moK�� ly�.AM�n�n�:W�@} )�aZf.�� lo� Y  �)#.M/ li>RnZiq/}_��<d%z<I�g- yup!� top  a3t�Z��^ isk�?A�al/a�j vers -sha� idea!��.�8v(e� c "A= �gu A" caH�0. Ple!��)�Fqdi GmeA��K j�'!�sau "I0v *n%w��"%�6�rgu��9o�py � be vali�r?m���9�0 li>U�\nona=P �$, orthodox6{s E�r�i�?!3Mann-W�\UI���Kruska Wall�estݛ�K���r&�?:�!�iof2�Q���NF� ten l�Hpo�PI�7�(�*���& �!. Jm/tr� �WN)D :-�kF/"]�?�i��m-t MnvCR��n�toward�+ ty -�nX&( �9�%arcNel (GLMz�#so�Pv)�a m&`m67%(ful�� Q�E��#"! gropu:~8%.�֡,,n�GLM�7-�� �trivialaK�E,�{ive� �c���j$" A� KW) �)�Ea�a4�9olTH-5i��<Ori�_�ng�C�Q".� �o o fa�W�A����9�59q� � <�/":B� How J�*de9_CEdws6���si�3���/!D!ah 2PZ t%1�U� -F��ca�2 tellEc&�` 8�a1� m�an"j  ��s�&ta��N�dwho{ t� ! �c��s. Thro�*!*Vas}2��Te�q[uIur�p, i�S"_", 9�4 itemen@1e@a�b��V "�r�#s8b&qx, "_"),"p(i)�te(�'(i, -1�jq5_"BՂA|O0J6� (�n8x! 1� ��2s::�"_G_sans_ex"$)"��F7=o)9�|��s)J��$RA>$VD3 %HI�m7rC_r_UI" *2B u N$ uc1">2"r13] "VC_ l  l RA1 �  �  l 2" :�&��#�!�a}0�Qu& >Kcran.r-�4bweb&fp7/ �3nr/t�*�kc/Z�:vi�iV�O!6�rixmx���6͕� I� Odendrog�EF�ge2v�E�H= "TF_NORMAL_NEW_4052"s+ = x|, row.���q�Q ",")�/dat� - t(gen&Ae�� Hmisc) ma�`RampPa�`,(c("navybluea3 whit red"))(1=r cor_5 trf(as.ma!3�G�) M !-rkE$r suM) p_m�8�]P row_)�'-!7"��1�) pdf(B]Nl&\ ",20,15,p|d!�a4�9!-_��_I m(M�W�a rev(-I�6Iing_me< V� e%A font_row =�b�_ col ) vi off(>��wB36�a GSdVX.jpgn�n�_-cutn���i&ion!d = tcxno onM�����PAT1v��EE�%GeVa�`�E.�]�V�3r:7:2lef�Yw7"J hasa QF�kt}$�� �'. How�,�I&3Qr2& r�T�nse high.X �@*�$� urviva��^Q }\ �$ *.
    �.lso �A�+� ens��=�-�cLm�Dou2Y/�[Ccp��� ly$o�a�2Bank Fla�b�W�b!ay�CGe.C,��7:�"� includ�'hL.joi"�/�s,�F�./efetcht5 nu�De -id CP003820.1 - n gb:����� s"�# u�,� tLiVaA8a,s��� beU`i�ea2*;+ mRNA<� %5o locu2Z (�) :.� Q��s(�x100..1497,1556..1767,1823..2274F�hd 2322..2782,2846..3126,320 <890,3958..5263,5, 5422JI45494..>5645R� !��&��coUA�AA�!%<a�lV CDS=  l4= 68� � n�re�.�!�{�9 "mod.'s"�d�1"�Pnt�/�s�+jeA�#!ES$"A� V%n%aa$� 9�3Q�.1!�$"CryptococA�ne�\�8var. grubii H99�9w^1� !�tiA"�K�"+8a?F-+&nd�GSEO��A,/t �"&�\5S)��tE1�.\Y�#(see 1014Z��F�$K.(p -Pc '^\s+� \s+'9Mgbhm1>�{!�950%�J� Xc 'a.*!�(:W95Nh:9955�}��j]��| _id=B^>���I^$�>�IF�Vpmɩe 2KRnC�!m���v$G�&-� CSAW1�Xex�,J$*�!;O6+Y.ykuse�zeZ�<�!���viy #pu�Ath�&YRBUqyaka=e�2 r^�<��M�~ bamCP(��CdeepT�b)�]�@F;zee�$�[�(T\�%�]ib5�& <(eoicl>�`)�rganism� p> pis,-��Q^#�Osey48i�(�a1�%�VCI=� all (un�[�O�c vals �!�I���VJr)%;3X (��8�WD��)l827-�achie's�gI���2�>�]scenariou�KO'Iu1��6re�ed:C �ldiscou�a �HT�dYd�?r�� mp le�"'4dm��pr� �HRD\��s�a�'��m�"��& Ԙ�Hcar[C!���%� Abd�V�spo�3aw�tm�1 rB.2W �j*x���@o��-�$Cybcn�9l# - NA�,�#Devon�(>oJ�� P�G�g.^ HSC1 HSC ealthy�N3 -J6DxJQB�D11  ?NK 2f b2f3f4f6f7f8f9RL-zJLS1zL1_NK-zN-zN�R7]R�D J��ylAb� �6M�oJz$l� C �i�m!+ 6$�#ita�m���e8��/vS#a�R wr�]�(d�"B( E!I��r� df1 uE`"HSC_LSC_BLAST_karyotyopeVs: ) �0F:.Jcol�s(df1))5$�]&l1�T[^KphaK ", (6>N�"�� "�8d�Y��f#�)�� , NK� Qs�%�,�u? a���%ig5!�t�7�!�!�,� M�� ,� Ͱ'��մ)���Adw M[.{QbI�8*is�l� �Wa!Pf:i&o+U�vY.�NA�  #%I� � to !<�&ve�0;=)0.s!!jobY*"a\,[seq(1,4,1)]M='HSC'.��D5�Ee�GJu 6,23.2L�w.� �)# �d��)��$NA['ues��.N�>I��vBO 5,21.�NKKb�22:qS':��D"xq�EdaQ�� a!-�) %�� |0 �3)|�vingF���4(da) + geom_�a�� \, H4) #xlab("�y" yGH ggtitle�Je�r2:���� �8� �%�"�""2� � rdrr n$0/BLMA/src/R/PB3A3~.Rn #wa-� "�sum28ŏ�ef0)�� (''DI�brekU�rFSo�%!��V�%G^v4*�,-- edit 1 --"e,Ha, stupid m�( 6 ��Q1�FCa le ":�.R"�EAC1`� ���D$a FUNCTION�"�H:V|N 7>Vrdocu�An� ps/IntE%/� 4s/0.1.0/topics>�n�J!��5A0�!lon&5g2.gAl5l�%!5w� � checkat z�capit(A5.:�-.��IQVU��xB~[��X9X1.49X:mnX6m�*Q0!a�#c�EJ��mUH �� �*��lFW%� _"q�Jf,5ir� )܁�%�oFdI�U.�l(2010/11/10/�Xto-2T-H-source-�3rN8 4� 3��"���R%"o�R��Mgooy+hnd1, mub5 � s)a(J~u �E}xF$, many�dM�c+bit)�car.tG86 ]���-�ake�astQ��iiGom?�it�aXmbP�1���AQ  v�X-�of �;�sHo� gg�-oGH�l%�b�/H�9a�E !��8�SH��}��easZ=a�l� �U*5;�:)dAsN�B (dds���d+B�Rsup� M�u�^�S5_)��/ �jr]ʁ r �8 set.seed(1) ddJ !� 3G'ASet(m=12($"S| ?O&&�#B ,ZZ3CZG�))ePs � =c(1�,/4A�Cxf�H$2022-06-21�h�0 prex�  (v2.0.N�5�

  • z

    This looks hard work. In Perl the function "index" and "rindex" as well as "substr" will perform this withoutP(incrementaly�}p. There must be an equivalent in Python?

    I've not tried this, but at a guess it would be something like,

    $target = 'AGATAGAr'V$query 	?DGA';
    while(length(�|\) > 4){
        my $locat!�= %� ($h, 
    �);,push
    �,6	
    * = )� (W, 
    �
    $),�t%P);
    }
    print join("\s",
    i), "\n";:~�E~�I assume that you mean "is homologous to	 by
     enA�sEU8same protein as	+0. Identical (	(	
    )/s shouI+Hfairly trivial to iBLfy using a tool suchA�tblastx.E�

    YouN probably A�8use E-value fore.$is similarra p *,A�%4it represents A�$ aspect of�data (inY8 case a sequencaRd a$4base) comparednM@null hypothesis (!��2R,statistics ojeSm�for�4t depends both-�if>��Mthe~,re!$no univers!�hreshola�at �i8work across all�sH!�8s. (See discussa2 ��\of -pHda-create-envs-only� op&J�X_ $to exit af�\>1�De� �.�Iw�!�1�sodrun � amrfh r -u �.m�li>Adm hnew rule called "amr_setup"�omeI�AIKE runs: M/!#��. -4�)&.� to� �.h:qHThen F :D 1 � int�r]�#f� a�U� file .!4 amr_)_plus�. Eith� [ eI�N�� c an j�EeU� c��a q-Q�Hfinal_summary_*.txt A�A!�,folder. FromF�twitter�; matt� ?lang=enn�Matt L� a�i ui j)i$UniProt.ws1dBbioaUductor.org/packages/release" /manuals/R .pdfn� A�q�blockpe> \e�column� show�bich ki�| v!��turned1�LI��objec�2��!����ed a ��� De����m�sM !0!>!�N�L �>h��d�fa�  R�U)h.ws ?y� !:9�i(i�\� ��� fy�r� blem~j to� iM%!�Person�, IK ra�]$consider B}E�� plat~!�hvi�R q_ dedica!Q��i.���ni�!analyzeI;("  0my opinion, m $I'm wrong))���Ph2>IUPAC Reports

  • �$The Intern} al!`on!�Pur� Appl�(Chemistry (M�ducesF�iupac�O!�L-we-do/nomenclature/n, recommend�� � .@%Xc�dXoundsy y!q�� H�,%�B��,brief-guidesr�) )a;. ""4a systematic n@aw8arbitrary struc!)a|,si�)�� "�� �%$at 'space'!�Dit. AK deal�. For Y organic%3%K0 (branched, f� Hrings, non-bridged)ah"Vfeasibl�a"e��m�edg�smnda� cky topicp Hs stereo%�Aj, lig/ priod orde�(, multiple �-� so o��

    ��,\ ia] e 'BBook' :^(qmul.ac.uk//.r��ION>A w��%  se�O PDF � . Conver@ n oA�mal�s��be +��uming,!�sa��t!�e�l Namey�$A resource 2�!�sp��.�n��S+�pr��es9��`�A�s�Yl,E�aAPI�ѯ��. S�� (i, qutest)��^ �k'Common�' fieldicdetailsI�U� a random �� rdId��>�api.rs��} /v1/ ;s/325/ jn6Q3�P!`)�p>� �i� ��{� id : 325, �e)& :� X2-Methoxy-4-vinylphenol %}{#t{�_onA�!x%�)� ingly alsE�< benzene (id 236ͣ�C��� Z Bw@ncbi.nlm.nih.gov/�nhNCBI T�!A�, }�f�ierr�Y\I�� 700Ka� ��b� /NBK25497rP(Entrez utilG�rogram�=�� ry ��toyBLatin� )�%�s�we>~�� �b�6p>Hmmm�amńBri� d en�in bi* >�8o truly underst��a�B �am�� Aժ-5FASTA� or�ebank vai9`"��ac~��elis} above.  Ů2�� do�4-I�hU�r brows�ifTB�a > � s. O\r�h!J �y�screen Ebse�em�se�Aoi��t� QR ink, cl�on�]*�� �.priatL !*t�?�e�j�e ��R�Dnuccore/MT742594.1 1Q$ start="2""�I)JfamiliariyBio�� q Q6a�U2"%p�o�in%���m�!�!F�n easy!�ip4 M 7b!�Un�Y�'s��u!� !�b� � p>im�  os�� Bio SeqIO^� .email =M&A.N.O� @�� .comM4 # AlwaA��=wh� areX!<�T9�.gb L,if�#$os.path.is=(B)ѐr�! # Dm�0ing... net_a lr�fetch( H! db= w nucleotidͼ , id MG762674 ),� l �modte� ) P� open�,-aw a) .-.write(�():&�(*�!9! Save��):[

    .*Par��... �1�� =IT �1��15 Z ; E�=a�P����>qs��3aw��u�a_pas� ��a�Qid,�d/ curi�"a���h~de�s visit6y ����At Ens�, w� Ans��V,@devon-ryan,�,c 1roment:Both�a�*why NAT5�@no longer a human)symbol �

    .",!equ} AA20�ana_-�d%%"it.� �yimt# peo� @iz�a=��Am�g�K&�U orig� ��M)/,Disclaimer: [�ad� e� f�#; ] ";ed�fA�V � . "r� 4pairwise.fst (-d_$1)�}� �se��ing) aln�" �matrix� �$s.�X'riK(�D Ab��rowE�(f"�a� colB� wardb5WN� l/&insert&� dq�sc�e!Ɖ��l.in��9� A�0hor ]io�nd deleU�WA*O a<happe1�� groukv6g, g�'l HIV���ic�d 02019-nCov. Es&i� i!��#lsp��-� * �\�A�> area�7res%! &H !�))[cer ly� id%�G""alq�to��'"]m0any Gibbs fre<erg�y�cu-\"��-�4h3>Vaccine�hi{ candi�J�͋5� v T� �av2 5 �Tso ?Ѥ w�apidlaXl d. SoU HnD1A��15>AOM<%gmea��_" SARS��"��L m%i�"aga� �Cov, ev#aa���$amino acid"$ ce (below�!~D�"�=@sa5�In �,A(ot.e"�yi!��)a;gagA�)q&1#�(coronavirus��('me�ismaO"�l0�< n� leav^ cytoplasm n�outcomh tiss�"ropa�dur� f in4'i"D h3>S"*�M��env@!fglyco%�inM�of.�t�h�$ceptor bine�8to !� en��a �]�%��ed Yh". �E�.�.p6�! suX�bWA0a��no�tcwh'env�  term1 f0o�%�y�osureAp ����,��4� a� unit ��Coinc��ce, lawE� hanc2�r��8vaUmeO����i Aq�Av authorI)a�r��g��� f�mbl�!B betw��IW��V$&&�sV�'� becar"F)�a�� repertoir�!��.��a� g� del pa�A�X.Ee��Why.�?�tT�$�o�F *A.�'er��ly :�Evi�ysurfa�. tige� )ac�Dch< <���(�� ])�ngp!ep�� (��G *e.�AVt6*f��80%�r-�1�flavies,W�`! E��Tb5�/M:s��� Rad<J amt�unusualI�RNA 4A�se� x��IK8*ly] R�yx� u�.E�serveYI�3sZoo��a�A:�1h23 (Zik�� , ye/f�Q%�).)�R1�Q(envelope (E� 6 ��$occ*m�AfA�n x 0 E-Mv�1  be�i!��'�46[6���d-:d. No-���a| b� 9m�"-�F�\2� , ��� *� 9�H�1h� )5On� eory QE})�VgA8��E�)A� topѬy=� li>A�Y'-hey�QMal"� c!�q�c ��p>B.� � sepaA�ng��.tFis exth6l{�6i�6wetlab��eri� u )<x9 Surp�$Dog - I su)�!wor- "unK�-(fortuiti�5"��[, 2 sk "D�1)�� eM�brt'3� �!� ed?" - NoRI .� �! ��$mprecIAB confe5�K��n��3Eex reV-�r"�Rn�,al/engineereznVi�"�"�07 O*a%IsI )|� 9N�]*<t s. Whe�� Ɂ�re� to�is՝�,)�!4aav<� po��!fiU poin%N!<th�) ll-sca�["��3(w�-�escap��� b. HA�aFay9 cur�/hin}%e�atFP -2a -~ isolate!t 9� (��V�!�y/A]Tcles/s41591-020-0820-9n�2_�M)v�����transmp(  bats�)� X UPDATE:&U *$ �%�{/%�a�drawn A�(lowanot� F�';paperR:Nby25 e@�te� revae it a�r3 !��� recei�q�D�$� y�,their tech0ak8n i'%�3���� Qul!KI� iEa� s, p=�ta��c�.� �� �i.<:�(1�%/is odd �#r�n#Qor� }(I�m!@i��D~.n� s�icism�"� ��1sZ�u,����K)GTNGTKR�,�)rt�K7*� s. A�$�5(P vs NR didA<�d"�6\5!� *r�3rev�$S4"a �8��8 �4to >50� Y�+�"�#� �<�'�q%h�7� urse�1nyx�100 $��2 eukaryo &l� �W!�� st Pr :onchus��us���ynb&m���5a � SomeA%Z�0!a� peer!Tie� �7p 5q<bu:E�co�a�R�eui .�=G!tank-1 [V�] SC; 1 > M� 7�  Sbjct �80:� u�6� 12��'EJmoI3fasg1�Aa��10�� :E�1�,�;"!m c�� a>a.�i� seak!aMya�@=HIV-1Y�E�A�re`I�lizu! (i.e.mrU��F3(eRQ��(smbom.�treE�life): addi alR*1�! �< ` quite< mal evolu�"� �!�!aa�$�8F�.�/trvrb�5ltus/1223337991168380928?s=20n%��NŬ60���biorxiv�Badd�.;B�<�s=� hea�,� ir websij� bioR[[&�JP%�e2p��.y,V. A rem`r:A ?reA�limin�*r�,Il� `  ��-��ew{T� J3 & regar�as��'�+ �"��pr��$ce/health-� e�6or,fO0�!�,news mediaae�7ish�- V�p>�4�s�n S (Z(unanimous) �> -pubq ��}�l� � er�}�(�Z1 day�4J) f]A'p at2st� E!-�� stud= �letm fal!� r��no�ev�lc| �5ri W pA�U)�acS9y��2��or:U gges U�f" )��C� M#�D�A~�-e) 10��6"�5��<er +&| IB{/ad!uap$e� F'�@ size.7/ck)Yt �/�N��0�deo me mete�b!�6&you �.`�|OPTION  TASK DEFAUL SCRI)ŵb_� �?p&3 Word��)iN � .ZD-S  2@~Dgapq#+:��lC�>to�#!ap �F<�97j<ex` �x )aqz >zF� )>��:�$BLOSUM62 ����9! {F={PAM30Vb=g�C>z1�Mg; um sY !wal8wA M�� �4upI� �F_�16� �_windowI�6�4 �_*0Q 2E�,�  0�h41-h�9l $thm � 3.e�5a�e��!J���Ev�*< SBOL� 7��prefix^uf �� anno��o0�F�3<�li�[3� "�&m0a�? Component ��o �^DNA(B�$`ers),/SBO:0000251n�j? )�$linke�$ �S �Fe@�o��at %>�o rol6AGѳ�2t(53�3 [e��lI�w6> de{�1�T� you'&al����j#H(*F&sH��prkC�g�)a�� in� F27N"^) B�S! ��%� 1655��>%��]�2I���� �cJ , ex���Def��onQ!�OZHAuV 1*�IniJ1^��D^��Dna>�B�zM�Q�B� (]�*�!$3� �2"7B II�asM�K>od&�'It �mv% �%l� M A_=!�F�F�"-(ly�0. V")*5���a is modif�8by��Ke�9 smid carr��k ) �"��act�6/%3\!�|  `:leas%��9~&T"�5+viO�S"(L>NMH�4��D�1� �[���oY>B]m.e�*�[k5/Q6eI vep/�ppt _@ s�jDVEPa��%off�!d�2�

    1�s--cach�5(#�B N �)�A|e �<�"ch��k to .�H�ԍ�ks&u conn %�i f��s�>�%<#���sn�2 -!VS-�#?4G� HGVS� � 2�<�"'�3���uppm5.*3|5x%a-v�/:�.Y#opt_-�n-Ya �'En* 2v�V�be madea )s�.�GFF/GTF �{C YR4. Add --refseq!S"  V(�?:Ged)�t)O%�Dz/6��kvk%�vi# [!|dir]A� �p>Spe 2>x$ di�G�*f5&�55%(.ok up!/Kc&P fir��-� #CVEP�"�#.7x5�built��6t}Ia�G�Hut�� 9-�if �<��eN9�$s (--hgvs)� checr r P\$��) _ref)>GM�� id=���-!"�inMQ�2GE_)�-jPcu��A�m�.S:�u�HI S?�/!0" ��N/nt.r   ocol�.i��0� adap�F8 bar�.ileOF9VBW/6YKd�(0anded-mapping�Bq0-�."Q#�.8AՁ9� �Av�;-!f\ w� combQ]"'f] �ev24*O.u A)PCR cDNAM�� ite,�D� !h5!���H.�lONT_VNP ACTTGCCTGTCGCTCTATCT TTT (SSP T GTTGGTGCT�X8;,ATTACGGCCGGG3(BC01 AAGAAA1TC4TGT"@2 TCGATTCCGTTTGTA(T�D3 GGTCCCMAD4 T]F�G�*TAD5 @6 hGTAACC � BC06D��GC �yD7 YA�GGGAAT.D8DAGCC�ACG�9 AACTAa CAGC�G�10!2! !7]�TCT�11 �C!�A�qTGG�12 �sZ%~ �+�RB12AET�GC�ATCAG:�A�IH%e� Q��JdM~� A�n�NM�#q�"� I�!_P1Y �"fOib�e�![DN babiw7ic�A�sBe�1��Z�Y,2* �a (�eimiC1� q'�1"�;�c*�(MSA)� actuu&�/a�eq3paF� en.aVp� /�on_wet=_4nC2 W2 Mw�  (PWM��l�&gh PWMBm��n�powerful��V often���motif�Gk�("@F "�"@a) d Shan9;*�o�P�(O ls�ndLF 't �E6 des�2�M�l2W>8"ɕ 2 1b=5�*v�(�Fas 1 2*� �Q!�('i�>r MSA7�@:o)�A�41��� &NG gap SA�#��  penal�3J:(���)Y" � d ab!D �]%q0%-! B�-,ntrast, pHMM�_ve� u�fle9G:=% C%9��d-�/?� UF�8,��al!�xr!e�l�_IH\ A� ��m�}�yJsi*C2� ://hmme;NnNHMMER3e>!�2E,W*Vsoe�ylab/hh-s�rZHS#[)��;.� � <�UB{$ n>VDpmc&�'$PMC2766791r�� pe�m@�Na aFK.`%sHMM!Fp`Z�Q� usse�:Y�$� okay�avEb-L:�se�+s;�3 @spend months diggade�0%�J5OF�bottom)U��3 a�6mun�C ituAu!�� oA!�i.ist2�debA�"u � �,�M��3O8�,�2�heatmap���<:jNoy�Mamz7a vc�"i:�.clu�J� a�9** mU&ph(Q�51(believ�( be B� �:p>Gener��*at.F�jo�V7tT&crw�ex�Ts� lev�:of$ure-myeloimKan4+factor}� Spi1/PU.1_l�6btyp $lymphbU� as Pax5|3g ��?�A�N)e�E� Q�A/n���"� �[m 3cru�?!�label vob� mark?B �a,Tu �pa�1�:; �i0' ok� I�( broa:Q� sz^U9asI�m�E,mov��5t9�)-�!��t?��B3e�abs�$ely. Do�.�a�2� gofC Ign�A�g�A=6�3s�.}V�e���"i[emO  � k� UMAP��,CD45 (PTPRC)���S)�/5?��/ga�e}leukocytg_�X �X�0!�wcy��:���A� greaE>�2Pi��tyVwTo0 air,A anyB;_H�Br��4JllIn5���Q�I"��sl� %ZQ@2softw� !�c*!-SMd�):S *�W'#�F%�A~o�&1� self hbl��0W�� �"�Ni� fu�h%���redAg A49C�EBfinwk��No�a�nH<I\5aa�icEci�Ao ya62I)Ace}� ��&*�$un�%��Di�ex*!�.6in�( q [�v� adou"Z)�+;/ch�:�+��ex�+ng �!�newly-�'��I�Db�c1�3l�@�)��E.cI�?CD �Hay+� $Bwa-mem mak�>ch�Bic&w �6 Yz!��)de������stinc ci.[6g"Ccou0g�as!4{ �e� �UsGSE] =FALSE�A�� :ź�4F�Aa�pe�M�aP, 3�C!�� . �:� 0d3� nno%3)�itE�!i/wo �W�& r!$�ai�se-{��4J]Zt�kew8e7Dt+�P�chippeak�I i[-hyperge�!�4Be��` enrich� �2ne��ar� overl f%�d-�res�0��� A �F1u� imax4!i� �R{78o�W!:�lu��4ح�(do��. H6�d�Sib�+ca@Bk��t_/�)?rC�M�c5at^�.e�T�Xa�H ball�2�EV.jj(��color)�eiB�M!�L�4e(l5is�-W)~�tE�>�9�I��a}��Wik0�Je P�h�Nc s  5eei�6�<F+r's !E�.N�� �E �6� (or �fan) օB)as�@ feel�a!-�Sed�)�J���16 p "�*�+( AaN,&� �A��k.k extb�Q�+mO f%%���� :q.�=��d�Ehii�!ua �, i.e .log� r�=a� sign$2of.u �.m"�/T@ EZM )O� by}� &6�Ō 8�l�Kverage�&%��F���L6=ed� op/� ent/ �_usag�"&��kS W%"�Kels��~a Ha��)xs,.,�^6- hist�� �2� �!(.orE -squ��`way�7&�bP�7%�A$Ein X bp<s�>�-ll){marbl�<�#X%de�?��!��1�ɥ�Z � 1�0B &�%Do 2.)2 &�%�A�9 ency0*� 2`�f�nN!�S�Pf�up ��}i�l.H%4 (pur��  up):F�b�)Fno_-_�: F%"*+ 979&p,1186J>5881J;`j� X%�� diag�^)$be$ er..�\� off-*s��A��[�E��.M���tIU1 sukU�A{� �Ls)�7*XdC_ Manager::Rall(cQ(Homo.sapienjF�PEnsDb.H  .v75�F Tx.8UCSC.hg19.known| /)J[Qp9�1�t�; err�D/ war8 0s (R v4.0.3 / OS 10.16)KhUN"��_� mselves/!on�c��'broken'X?!�a��2ng�il�n�H}&� gBig Sur �k�V��%Os I��J$�i�lem-�WR�a!� xcp�� #&�� (e�J*#t�\s>H.�#1x�e�].��extA -Lv�}(12) /Wl,-r�\,~6" CPP wI].wQ�-I.^��n�f 6� om� xU0 i�s�ein R/R�;ioZ� # To�"d4I7 eg-d�! g�.t� : �. ys� #: ,�]  � BT &{ 7 �qr �<lbx iKh)u SO� rS!ha� �� �| u� (re:Fb1m0 Vp.�fLa/65334247/12957340""@*�/� <����"�\�Bu *� fxcoudert�{-m�os/tag��-bigsur-B&�Jl +�j j�6d&� �1�Q/ �ID!8 /� ,� �`"� �*  B�"�` 3.12Zqp�n,~c!�B*����;�����;�qVi�� bedmap --���Q�Eq�.n"�/custom �>wdreg� �� &�a(paste <({ echo� --un1i 0 --d�A '\t'Z;.bed lp1):M�FF�;1 lp2��a�Q>^p>Ref.F�bedopNq�Kst"p� 0�t�s=map4ele=-and-�b lap-"snq�����i�p> w�*W.van;bed�MBQ1y^��b�-c #B�-c [-ea3�X in A}cgC4 F�l B}=- �p ݀A#YoPt�\n�s"�2?O2s@�!0by -f, -F, -r�-s.F6W�8T"�-��`�Ca,�1� ��B$ 1XNerz/!$-a.�-bq  chr'�>100 2 1 �ce7�c>�H<4 o we'"alH2tDWc� Ao���/m)o!�jobi �T^V $"dte �(E��P�) \�B���@��5z!�5~ ��>2F5� �! p>Bua*anmuktr�eld�%!��R)Ecu����remv$�J�%q�Q)�Q2��( | cut -f 4f\j� N���)�-PA�6I�0�s��93�in�z�AU!3ur-rI�Dm��u� ���9ci�9)��rU;3h ����s�)i2+�"K#� ;E� �"�c&qA�]B� +gnu,/E!a$/bash�y8ual/html_node/P^@-Subs�)*_n�� �@�/*ion ���_#vofA��)%%-B�" �!@a�$an�#�Y8s-�a!fp�#Not��(Y t is/;;or��shellb<�m�� �F� zsh B>�!ͅ��]se�Is�fu Q%�sQY?enviro�O��A}�)s�-y�u, not,i�, �ki�^��lZ�n�l`<< (e.g., "my_env""�?"�>u2meBh"�h�79@�7om�"�S�.{@f!!� ?!?"� %�v�D:�\a�� ��%��!%��=ha!�x7m � nda-5?ixuJev�Ej�H�-.�yam�'l�2$ . ��2�'��&u}y"B��"!�Bm*� ,maxplanck-ie7�L� ob/mY r�R�$Pipes#L174nkl0aZF32�a �K ss="o~-p&�A�k� ride">��*e%hlib md5%s=.md5().�("�Yq gkt 9�".encodemf =�("� R�", 'rb'Bhf+ F"Bm h = �.hexdi?L(>��@ �hQ$E[e��& A�%�LE�ZwoFTMFosq)ea�r;8CUBrA��+E�%��a�s� <> A�D ]6:!97/vi lh_�'.W�/��e6�.�+wo�s�8no"�Uk�e_]=dp*eghy� *&� t(�� rougX���xin��� �u��"�6A7�* � ic��6}J  Q9UJL9"(Q:�It i>j ?( n id V,m�6#�Ray�ska�%�tq�SsyntaxA&I8id: |M@��%zi�?)IQ� QMdrAW�Gy�C4Fl�2F(�-Cmn�'�4 ��Y� seUaQ�attTC0F�� P00001)�;�+If"���!�*b\O�&o#I g*G�A{<f&��S�5�Np&$(Q�&/gff!��s!�NW�n)�"QrV\>À�a/�_�FsnJ� �N�m/�[9How�fig"J�� mes�$�3tr}*v3�2A�&�Y%  m6~A�… :-BD�k of S"��AVN�? I�J`.�. W�f}�;�* @(3.13.3)8"Aymachin��Cr�sSe"E !a��  14�/� /to/�` dva�liXF� ��&upȂ�k�(6.9.1,IB�!�PȊ9U"v�6��. Perhap$+ forgA�ama? (��~ne 16>m� otG�}!use:hinC\S�~e piex� dvic�rȂto4�&S9�nd/or�u!AAl *

    b rt�\��'fd MgE\I�"HUE� mpor^,Y-�� �!��Z untiJe Tg�ab�X!Hp�TedL!�K�4 tofpe en��a`�"ZI+ :��19nza�#a�Q�3���A���= $expand(…"F A�,se/Xe�Hp�)| )-��%+:��i�)�Y#��?tk ba�n�JA!ly�"i,a]�$!z}. �B���R �%<�kngaJ� mim M�&�(s���)\1[�?+ J@ (John Marshall'�Kre�D� N�h>/home/j�?f FSNRE*A�uaB�-o� � z , #�--�3��:Nc�iOKB`� BuilB DAGa� jobs�{Job�� ts: � �I7Padsax -  : y�L?> to+�.>#. d [Fri Nov 12 08:54:54 2021vcVJ , s2Ja , s3V>�zipJD >CzipE|jobid: 0 �_: M�"�J�ysZ�8wildcx: �=R1v��(Wt�ae R "k]J� = �usug^) � troue2hoo_L&�d&uZ5 a�.� E� ,s%f!��}� M , ed�hem�(wnߤ�:.J  CHyoBSh  �nEQ@� �lef��2� trimy�� ~pl��� � �h�a=� �GyGe&F(so I'd keep�pli&��"A ��:n| �.sQQi7a�m 8 %hev_ze e�* � A��� �out�G�)ae�>Y%UO :��~* Yi Z0� ce�lli�!��-}�JA !��yiX�[� debu�D� nity�QYuB�e5���� itJ_"#Y��#�2x� maxiȆn�ssj'�~��ix9ca`=�K �as.num�u�ZomOv%two-dcqoal�<�-one2ve D . Ba�oA�A��.-�"1;CV4K�aD!S�f� )�<V�%�as�II�!�twG &7B)m) .�=M�Qs�laQ �1�uaQ�-A}�%�rE�[�)AEv:A� ymeuB vari�W�K��@\Z2:aaG+3FQ� Pos� - tidy�� tibb&^^n�IV)�;_�\l-�F?�3."��enyiR<ayi��;isD",�I Fungi, ai�fap�g��of��Emi�[���.TIe�gŢU�n��ter [�rbesu��c`>`Qod)�aOd�ivo�"N[��' ��|� reduH!� ���ig��\ �'i/wave'��~��.QV�os 2�?B�6kwr��20336/&t�k -pron-�-�-���tig�rfO�-�Ga">Im��ngA}F9&F�B �/sc.FE�?�!�po\;uv� exci��1"Y_OP�;o2�wdidA3� ;-(��pd��keFIi�h�DlleaguNrdeploy��N�N �q�iF� . HOWEVERIAds =*ڌbaIt�Fye��):��fM� ��.Q{�(m2%m�'&~�JÁ�@pbl�;B beyo9it?S��cjE1cQQ}Tdo.kby�gG�fYQ'R�bo=A��j);ewE�bWI��y�desig�4� 1C/ ,�ap�HfN�&�H �OeuE�"�pP9N-EP���  � i��No(IU10%a�!o�s)�)��� tru���� $u�օ�LEU�Y�G#%��Epo��5o�d�M�>=��Zq���ng�AX�=fivx jumNQ�]���} So�n?&�u�A#��A�Ae���"W)�"hH"�>�|�#AA��x�aE�yp >FCQ|i�P�x�xU�UB]�!:sdi�) f4(��tj�1eggNOG�-��u�� ��MZ��.� 'գB�,KEGG nos. M�ex��+5�{�L arou��!�!TRNA{E�+U �y�9%? �Z& �sB}�TLs.utexas.edu/displayŖteam/�<+Co�v��)�guy� �r�� � htseq �>c;� A��� phraȘhe" U�T�tIba%F{f! I�B1tZ%U�\A� �N�1p Do]o�o{-��l� �o,Fz�������1 li>CʞmU�%0;�f4jRwC�b�3ePqM�^��[prq�no.,�"� :���H'�saՊlAat ��0 �v,_n��r DEG ��u m�.E�N�� ��m��!� o�Y|����~0m�I� � Ww%>aper�J,i�"f�1m-HmcA��y(�uJ&�e4p>I�K}"�C���� 3 -"l#���"�#g I�ly�We�alG&Q�qx yst�O-l�Ml�� � x2u���C"? u�4PB�I�3H cklyy#��-�m��Oa I_n#)�,r�XU-3K�2Z2�N�NE��Ia��f�!&hundreds�'�Csa0��" � ���+JB$(pdb101.rcsbB$motm/24r��PDB) aI�l�mg�X �mI�TZ!slij��ue c-�6DŽ.]=]!-end��� i bI��yf�pof��pe8����f"%q�RMm�UW�%� �:BA%Dd����!A�XJ &*&�benchI�Tl I*��J� cano�w 5�.hBOg'|f�N/:�5://ftp7k ,�p pub/fvPes/genbank/sars_cov_2rZHe=�a>��)�:��e EMBLRg r))�in͉BԜ�-�QQ:-��� :o��XF�d6ME�ID� QHD43416�a5�&?{V��$�d��F� wwF� labs)M/vssi/# ?V���Eage_ss=Sye%20acutЁira�V$%20syndrom*mz%202%20(��\-CoV-2),%20taxid:2697049�$SeqType_s=&�pnaa�ghY��&pa�re�1�(�o�*y*y ���rcaJgf'J�' (f�n� Rt5s��A��a�ef� q*� H��"�w���Elm:an��8e�}GeM��.���NC_04551v�g��� AO�kI}�$�BEfg� � � i �n!� tary��Ey�*%d?0*`��T2&�m;�"� ���F:Wa��jmqVCal&�le�!�5� �Ger͈\o�!�H:� ��I��C B��Y�N(googleapis.�>gcpM|+--gnomadN>/3.1/vcf���/ .��s.v3.1.~4s.chrM.vcf.bgzn4mt�ua>:X  ��uz^� nven8�--A��z�Q��u!bgzn !sS�rVok�5k6�eun� rb$"�b�%Ps ( -x7E ha%�ct,��FC*g9 -dc �1 |eZ p -v�� c�|SH �� mt!cFPI-gr>E1(�ra(M�; �4at pops.OA��!` .�a�WI�)r� e /��ns ��@�ic_ D �e�ni��rzq��NP A!E%�� J�e.$6)R� *�=�9/]�stQ"n�Xg�s]�.��� GFF3�, a�!tfneai54���ivy����i���h�sE�B9�%(n!��0�Sn �ҝ�+r�-a��$149�: ��A C npgA �<=npg; \_ psed=AP4C;vep=C|non_co� _�G�+_exonQT|MODIFIER|MT-RNR1|ENSG}0$021 1459|T"�`TH389680|Mt_rRNA|1/1|>L.2:n.845A>C||845|8 1||1|SNV||HGNC :7470|YES!1;�_��_�S=0|6 0|0;p"�onV#"s!d_biasf%weak_e C�f(�6� f'h0��� smy_�$_min_het_t�� ?2�6;exs�ded_AC=2;AN=56432;AC_ho m=0 et=0;hZ�dp��(=2976.53;mq .;tlod $AF _hom=0.%�;AF�max_hlhap_AN=2A�[1537|868|603|34|282|91|147 83|701|934|3144|2732|663|2977|4724|5672|126|1|1298|366|7|393|3079TP7|1234|819|5 46|12|89 �C ���E _F��B4F_!/E)>e+00|� � � � � : 5gA�jg� #�}�#�%r�1�"y2�//!!!�g`'on ����� 1 stuff"<�#edJo'� s�� ��r�� ��� �qL�Gɟ7(mitochondri|`"� (� �������x& ). Grana���$v��b>ey\cri�~ a��IaP�4-�< �$n ��W �,w'�e� .2!Z�v � �� @ndeK�'W�hea>�-.�&G 5�L[_l�k�=��k�dx^ "OsFk H##INFO=<ID=vep,NzD=.,�=StW,De!Xp ���6� / x E'|xw;��E90e SINGLE_EXON�a � END_TRUNC����"aY!#LOFTEE2uP�v/hmis, &B�in� �T-UN�! ,mat: Allele|�8|IMPACT|SYMBOL|�|�_� |BIO|�|INTRON|xcp|�s_�� |CDS @�einAP�_P��s|Codons|ALLELE_NUM|DISTANCE|STRAND|VARIANT_CLASS|MINIMISED �_SOURCE�p_ID|CANONICAL|TSL|APPRIS|CCDS�4P|SWISSPROT|TRO�|UNIPARC|GENE_PHENO|SIFT|PolyPhen|DOMAINS�D_OFFSET|MOTIF_NAME ,POS|HIGH_INF "� -!8 �-� -dep)��0"�NS�vB�8"�~/.!=rc5=/��/3%�R ���H4r�jV��( MAINTAINERN�da 7[l+ Teamm4%@c�_uum.ioe�%J apt-6A�u��:�>�bzip2HE�M� sSL A��qE�.~V� �>� -oI�!��.shFv!�J( -bfp*RUF8w\tmpzb|.�python=3FU +-N �J%"2x-)$�I�&ZY.�-yF�o�%f] autoE[F#�varBU/alV1�Z(og/dpkg.logF? � \--� --yei6 @ya�������b~�R��6�x��Bea ,+A�m�s! A��� Oi�+��&�Yny.b ?��.�lp�!�ڴ[gork.P�nhonh0�F�$>���� %�a89 x��%���Mr�M "9 *''ly �r~docker pc�!i�wi}�3 #� -i -�n#duu6( �1�:'

    lkea chuckBVol*ach isn� frolvlad/)e�%3Fn��Ku.����L �, Ȣ>y�>rglibc: X3.14 ARG CONDA_VERSION� 4.7.12.�<'MD5 #x81c773ff87af5cfac79ab862942ab6b=;DIR ;��� u: !v� �DIR!���ay Oe�lYTHONDONTWRITEBYTECODE=1 # VaA0daśe[T ? ****�Rdev&�U $.��oapk�g cE0 --virtual .b�:��end=��Fca6� w��� \ b>�+"? r�mkdirA ��^"F��G�://�k"�)�Mh}>| � -O��e�}%F��MD5�;R" |�Isum�+Z _=k"!�U 6jJ%С��-f� "1)DIR �z.y ex/�P=��q \\\$a 1 /etc�с,.d> RYB�s�ˆ�����F� * config --�o5��_ F�% �B�upE�J�a���--p2R�` _�f6� $ �~�%�-&�& layb͡dum�xoc}͙�a!wh�}1of.=y�aک"�� ro f�4�ca|!�6AAa�� �!��9%5�s�u��NA���1aW7��9D7%%"��!oaN�!�"���+���q4ͰIPy own"�!v"5as�!c of l�Jof0e��% !,ud (AWS) EC2��ic&� !�2��A !!�bw����a�`AMI�]).d�A �4��!0� d�%SɌpre!\eR"�_ce�aQO_v��7�?a2$sp&aJwE�\�:W� �S3��AzDBpid?�⁀w�ve��o*#A8s�,�X6ruCSX!!) � x�,e 200GB EBS ҤmkT�M �AWS ECS!t�w�w�o�=X6z�1�5� |{B�|M>i<nR�-ato* .HXdv.t4iotop�( �few_YA�M^M� moni]�dis��tiv*z(ni�(�)]�!�s��^Ma"em���� slow, cc�15MB/s �. Syny<)�E S3eK L$0�1IoŪ }snapshot H"�5 $.*- ��4�jO\a0m���+aunch|�I�&e%c�Ua9�>/NX5�3L��!A����D8Ӓg�ELfAv? p �a�. B�(�?,.aws.amazon.�(AWSEC2�%UserGc�/ebs-XBi�e��%h1��c�*Q�Af!�s\�ng<']h EC2,#M%�Jr?-�]]��b�$r. My%Rm�Ah)��h7&��iz� L:U�1!�allL��a�*f t�_A66@���Aed �"XD0�IQ� a�c&fA�!�Yq��n�bl�XbX;6EFS�1s��sm/��I>S3�ide D�7�&84 �(� 2fCuser4383��C!+bV,:��WA�0%l{�x!�d&5u �;i�2 !�>�Ai�bZ�2aF�V*�[- n�(Q�n@Y���eC�Wc3>"y��� u�f��!z���"�/i�Iwnf>8�� EQY� by 4 -0�����  of FM- d(2bit.64!�_�A08321 8x!��+s|��Ԣ *� �+}{"��ov8 r!�B�to ~1�E~8  � foot]5:140GB.G#<�3��LD�a7t=#r�@�mi>dex IO%716!�&"��#���lyo �6�/ impact��*�i� i6'�j�6�>g�}�2s� J-���*��a��+7ɸwr�Hrͷs���b&�.�?�R @ . CaYK�kw��a2>�s�� _d �}�p!�RT"�h$FU� �*Q%� �.�H i��!�J&licoit��ii � B�R�3p� s��F�MAkv�]�r��$ple.
    ��3�p�im�E� � Cell_g5���� A�dden dF�!�n=$aOUMIi�!��] �[�� �xJ�0 I.6o�EX -&> e empty0let p�a�o�NM�:�-hN3al��Ul$41��atF1�b�r.aR.nj!SB@�P!�r���ڀF"��ee �G/+0 m�p�T>�ofFe mRNA��2/�'llAa"!�"��t=�? molecul��b8> r�2I�inguishI9�@-[2��9`.w"7&e�9G nulcei�=����.VrV4*��iI-!�s n*����D�|��Ar<"��ic �iwK��(�K.baq>@2�C2�YE�(����!�_�s����^2?�was0(}p � lysi&��3g��as YNJ4@���g+m m�t �! ^�Z=VV�Mi��a�`itrT96*EHJ^fni�e!�)dE�|H� ��tݷ�,���a- n"իB� 7) , ago����g�f =%�s����JW )�AVeK@a̞lě%��m t �rte��.Ob$�epF�Q�-= ͳ��u�pa"5  toge�o ��3eI�%/?A� 85�l�� ��N/�.���yLrid�t�J�)����9T)(!#inn6T )�OYq?-QG6FeIca&_ : GATK Hax ypeCmr� 0ep%�(--�i�bama�T) ���� BAM��!\Z��&tFu >A�56�6^n_�� ��c%�-z�'ofa�V� B*� ov�.�nAal��T6�a�.cr%Y vi�ơ\(r-*i��� ��\!��sam�s tã!OB��!.5�&�me[A /igv^n�IGV��\��o* �s��(jm��"�tar0}T�/a��A�-z��bp,,Xm��:Vf!h�L�]� l�.�81�b�n �DE�so�dins�*��5�/e=e� �to*�Xmi� i�s�1nC2Q���/vH ik�k. T)�s���"�>%�!0using to read�C the data has an "encoding" parameter that you can set to whatever e 1X your file is using. If =0doesn't work,* Kchange�w of I�by: