Commit
·
568d105
1
Parent(s):
23d70bd
add new dataset with correct UTRs
Browse files
multi_omics_transcript_expression.py
CHANGED
|
@@ -338,9 +338,9 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
|
|
| 338 |
"DNA": standardize_sequence(padded_sequence),
|
| 339 |
"chromosome": re.sub("chr", "", chromosome),
|
| 340 |
"RNA": coordinates_row["RNA"],
|
| 341 |
-
"five_prime_utr": coordinates_row["
|
| 342 |
"coding_sequence": coordinates_row["CDS"],
|
| 343 |
-
"three_prime_utr": coordinates_row["
|
| 344 |
"Protein": coordinates_row["Protein"],
|
| 345 |
}
|
| 346 |
key += 1
|
|
|
|
| 338 |
"DNA": standardize_sequence(padded_sequence),
|
| 339 |
"chromosome": re.sub("chr", "", chromosome),
|
| 340 |
"RNA": coordinates_row["RNA"],
|
| 341 |
+
"five_prime_utr": coordinates_row["5UTR"],
|
| 342 |
"coding_sequence": coordinates_row["CDS"],
|
| 343 |
+
"three_prime_utr": coordinates_row["3UTR"],
|
| 344 |
"Protein": coordinates_row["Protein"],
|
| 345 |
}
|
| 346 |
key += 1
|