GRichard513
commited on
Commit
·
5fd256a
1
Parent(s):
0121321
fix: removereturn 5UTR/3UTR/CDS
Browse files
multi_omics_transcript_expression.py
CHANGED
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@@ -338,9 +338,9 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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| 338 |
"DNA": standardize_sequence(padded_sequence),
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| 339 |
"chromosome": re.sub("chr", "", chromosome),
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| 340 |
"RNA": coordinates_row["RNA"],
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| 341 |
-
"five_prime_utr": coordinates_row["5UTR"],
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| 342 |
-
"coding_sequence": coordinates_row["CDS"],
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| 343 |
-
"three_prime_utr": coordinates_row["3UTR"],
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| 344 |
"Protein": coordinates_row["Protein"],
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}
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key += 1
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| 338 |
"DNA": standardize_sequence(padded_sequence),
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| 339 |
"chromosome": re.sub("chr", "", chromosome),
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"RNA": coordinates_row["RNA"],
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| 341 |
+
# "five_prime_utr": coordinates_row["5UTR"],
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| 342 |
+
# "coding_sequence": coordinates_row["CDS"],
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| 343 |
+
# "three_prime_utr": coordinates_row["3UTR"],
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| 344 |
"Protein": coordinates_row["Protein"],
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}
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key += 1
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