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InstaDeepAI
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multi_omics_transcript_expression

lgonzalez1 commited on Mar 25, 2024

Commit

6e6059d

1 Parent(s): 91b3364

take fixed csv file

Files changed (1) hide show

multi_omics_transcript_expression.py CHANGED Viewed

@@ -299,7 +299,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
         if self.expression_method == "tpm":
             self.df_csv_file = dl_manager.download_and_extract(
-                "transcript_expression/GTEx_final_tpm_multiomics.csv"
             )
         elif self.expression_method == "read_counts_old":
             self.df_csv_file = dl_manager.download_and_extract(

         if self.expression_method == "tpm":
             self.df_csv_file = dl_manager.download_and_extract(
+                "transcript_expression/GTEx_final_tpm_multiomics_fix.csv"
             )
         elif self.expression_method == "read_counts_old":
             self.df_csv_file = dl_manager.download_and_extract(