### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (p_custom_action_name == "select_current") {
		Node *scene = editor_data.get_edited_scene_root();
		if (!scene) {
			show_accept(TTR("There is no defined scene to run."), TTR("OK"));
			return;
		}
		pick_main_scene->hide();
		if (!FileAccess::exists(scene->get_scene_file_path())) {
			current_menu_option = FILE_SAVE_AND_RUN_MAIN_SCENE;
			_menu_option_confirm(FILE_SAVE_AS_SCENE, true);
			file->set_title(TTR("Save scene before running..."));
		} else {
			current_menu_option = SETTINGS_PICK_MAIN_SCENE;
			_dialog_action(scene->get_scene_file_path());
		}
	}
}
Ref<Texture2D> EditorNode::_get_class_or_script_icon(const String &p_class, const Ref<Script> &p_script, const String &p_fallback) {