### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
atlas_source_proxy_object->edit(tile_set, tile_set_atlas_source, tile_set_atlas_source_id);
}
void TileSetAtlasSourceEditor::_update_fix_selected_and_hovered_tiles() {
	
	for (RBSet<TileSelection>::Element *E = selection.front(); E;) {
		RBSet<TileSelection>::Element *N = E->next();
		TileSelection selected = E->get();
		if (!tile_set_atlas_source->has_tile(selected.tile) || !tile_set_atlas_source->has_alternative_tile(selected.tile, selected.alternative)) {
			selection.erase(E);
		}
		E = N;
	}
	
	if (!tile_set_atlas_source->has_tile(hovered_base_tile_coords)) {
		hovered_base_tile_coords = TileSetSource::INVALID_ATLAS_COORDS;
	}
	Vector2i coords = Vector2i(hovered_alternative_tile_coords.x, hovered_alternative_tile_coords.y);
	int alternative = hovered_alternative_tile_coords.z;
	if (!tile_set_atlas_source->has_tile(coords) || !tile_set_atlas_source->has_alternative_tile(coords, alternative)) {
		hovered_alternative_tile_coords = Vector3i(TileSetSource::INVALID_ATLAS_COORDS.x, TileSetSource::INVALID_ATLAS_COORDS.y, TileSetSource::INVALID_TILE_ALTERNATIVE);
	}
}
void TileSetAtlasSourceEditor::_update_atlas_source_inspector() {