### Godot version

4.1.1.stable, 4.2.dev (2282fc5de)

### System information

Arch Linux - X11 - GLES3 (Compatibility) - NVIDIA GeForce RTX 3060 Ti (nvidia; 535.104.05) - 13th Gen Intel(R) Core(TM) i5-13400F (16 Threads)

### Issue description

When using Compatibility renderer, adjusting the Alpha component of clear color affects 2D editor content.

This does not happen when using Forward+ or Mobile renderer. Does not affect 3D editor and the running game.


https://github.com/godotengine/godot/assets/372476/e398522e-590a-4832-959f-ea8ba8e71c5d



### Steps to reproduce

1. Create a project using Compatibility renderer.
2. Adjust the clear color's alpha component in Project Settings.

### Minimal reproduction project

N/A
src_rect = Rect2(np->source.position.x * texpixel_size.width, np->source.position.y * texpixel_size.height, np->source.size.x * texpixel_size.width, np->source.size.y * texpixel_size.height);
						state.instance_data_array[r_index].color_texture_pixel_size[0] = 1.0 / np->source.size.width;
						state.instance_data_array[r_index].color_texture_pixel_size[1] = 1.0 / np->source.size.height;
					} else {
						src_rect = Rect2(0, 0, 1, 1);
					}
				}
				state.instance_data_array[r_index].modulation[0] = np->color.r * base_color.r;
				state.instance_data_array[r_index].modulation[1] = np->color.g * base_color.g;
				state.instance_data_array[r_index].modulation[2] = np->color.b * base_color.b;
				state.instance_data_array[r_index].modulation[3] = np->color.a * base_color.a;
				state.instance_data_array[r_index].src_rect[0] = src_rect.position.x;
				state.instance_data_array[r_index].src_rect[1] = src_rect.position.y;
				state.instance_data_array[r_index].src_rect[2] = src_rect.size.width;
				state.instance_data_array[r_index].src_rect[3] = src_rect.size.height;
				state.instance_data_array[r_index].dst_rect[0] = dst_rect.position.x;
				state.instance_data_array[r_index].dst_rect[1] = dst_rect.position.y;
				state.instance_data_array[r_index].dst_rect[2] = dst_rect.size.width;
				state.instance_data_array[r_index].dst_rect[3] = dst_rect.size.height;
				state.instance_data_array[r_index].flags |= int(np->axis_x) << FLAGS_NINEPATCH_H_MODE_SHIFT;
				state.instance_data_array[r_index].flags |= int(np->axis_y) << FLAGS_NINEPATCH_V_MODE_SHIFT;
				if (np->draw_center) {
					state.instance_data_array[r_index].flags |= FLAGS_NINEPACH_DRAW_CENTER;
				}
				state.instance_data_array[r_index].ninepatch_margins[0] = np->margin[SIDE_LEFT];
				state.instance_data_array[r_index].ninepatch_margins[1] = np->margin[SIDE_TOP];
				state.instance_data_array[r_index].ninepatch_margins[2] = np->margin[SIDE_RIGHT];
				state.instance_data_array[r_index].ninepatch_margins[3] = np->margin[SIDE_BOTTOM];
				_add_to_batch(r_index, r_batch_broken);