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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

int export_format = int(p_preset->get("gradle_build/export_format"));
	String export_label = export_format == EXPORT_FORMAT_AAB ? "AAB" : "APK";
	String release_keystore = p_preset->get_or_env("keystore/release", ENV_ANDROID_KEYSTORE_RELEASE_PATH);
	String release_username = p_preset->get_or_env("keystore/release_user", ENV_ANDROID_KEYSTORE_RELEASE_USER);
	String release_password = p_preset->get_or_env("keystore/release_password", ENV_ANDROID_KEYSTORE_RELEASE_PASS);
	String target_sdk_version = p_preset->get("gradle_build/target_sdk");
	if (!target_sdk_version.is_valid_int()) {
		target_sdk_version = itos(DEFAULT_TARGET_SDK_VERSION);
	}
	String apksigner = get_apksigner_path(target_sdk_version.to_int(), true);
	print_verbose("Starting signing of the " + export_label + " binary using " + apksigner);
	if (apksigner == "<FAILED>") {
		add_message(EXPORT_MESSAGE_WARNING, TTR("Code Signing"), vformat(TTR("All 'apksigner' tools located in Android SDK 'build-tools' directory failed to execute. Please check that you have the correct version installed for your target sdk version. The resulting %s is unsigned."), export_label));
		return OK;
	}
	if (!FileAccess::exists(apksigner)) {