### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
for (int i = p_start; i < editor_data.get_edited_scene_count(); i++) {
		if (!editor_data.get_edited_scene_root(i)) {
			continue;
		}
		String scene_filename = editor_data.get_edited_scene_root(i)->get_scene_file_path();
		if (p_valid_filename && scene_filename.is_empty()) {
			continue;
		}
		bool unsaved = EditorUndoRedoManager::get_singleton()->is_history_unsaved(editor_data.get_scene_history_id(i));
		if (unsaved) {
			return i;
		} else {
			for (int j = 0; j < editor_data.get_editor_plugin_count(); j++) {
				if (!editor_data.get_editor_plugin(j)->get_unsaved_status(scene_filename).is_empty()) {
					return i;
				}
			}
		}
	}
	return -1;
}
void EditorNode::_exit_editor(int p_exit_code) {