### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
bool is_resource = current_obj->is_class("Resource");
	bool is_node = current_obj->is_class("Node");
	bool stay_in_script_editor_on_node_selected = bool(EDITOR_GET("text_editor/behavior/navigation/stay_in_script_editor_on_node_selected"));
	bool skip_main_plugin = false;
	String editable_info; 
	bool info_is_warning = false;
	if (current_obj->has_method("_is_read_only")) {
		if (current_obj->call("_is_read_only")) {
			editable_info = TTR("This object is marked as read-only, so it's not editable.");
		}
	}
	if (is_resource) {
		Resource *current_res = Object::cast_to<Resource>(current_obj);
		ERR_FAIL_COND(!current_res);
		InspectorDock::get_inspector_singleton()->edit(current_res);
		SceneTreeDock::get_singleton()->set_selected(nullptr);
		NodeDock::get_singleton()->set_node(nullptr);
		InspectorDock::get_singleton()->update(nullptr);
		ImportDock::get_singleton()->set_edit_path(current_res->get_path());
		int subr_idx = current_res->get_path().find("::");
		if (subr_idx != -1) {
			String base_path = current_res->get_path().substr(0, subr_idx);
			if (!base_path.is_resource_file()) {
				if (FileAccess::exists(base_path + ".import")) {
					if (get_edited_scene() && get_edited_scene()->get_scene_file_path() == base_path) {
						info_is_warning = true;
					}
					editable_info = TTR("This resource belongs to a scene that was imported, so it's not editable.\nPlease read the documentation relevant to importing scenes to better understand this workflow.");
				} else {
					if ((!get_edited_scene() || get_edited_scene()->get_scene_file_path() != base_path) && ResourceLoader::get_resource_type(base_path) == "PackedScene") {