### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
gui_base->add_child(project_settings_editor);
	scene_import_settings = memnew(SceneImportSettings);
	gui_base->add_child(scene_import_settings);
	audio_stream_import_settings = memnew(AudioStreamImportSettings);
	gui_base->add_child(audio_stream_import_settings);
	fontdata_import_settings = memnew(DynamicFontImportSettings);
	gui_base->add_child(fontdata_import_settings);
	export_template_manager = memnew(ExportTemplateManager);
	gui_base->add_child(export_template_manager);
	feature_profile_manager = memnew(EditorFeatureProfileManager);
	gui_base->add_child(feature_profile_manager);
	build_profile_manager = memnew(EditorBuildProfileManager);
	gui_base->add_child(build_profile_manager);
	about = memnew(EditorAbout);
	gui_base->add_child(about);
	feature_profile_manager->connect("current_feature_profile_changed", callable_mp(this, &EditorNode::_feature_profile_changed));
#if !defined(ANDROID_ENABLED) && !defined(WEB_ENABLED)
	fbx_importer_manager = memnew(FBXImporterManager);
	gui_base->add_child(fbx_importer_manager);
#endif
	warning = memnew(AcceptDialog);
	warning->set_unparent_when_invisible(true);
	warning->add_button(TTR("Copy Text"), true, "copy");
	warning->connect("custom_action", callable_mp(this, &EditorNode::_copy_warning));
	ED_SHORTCUT("editor/next_tab", TTR("Next Scene Tab"), KeyModifierMask::CMD_OR_CTRL + Key::TAB);
	ED_SHORTCUT("editor/prev_tab", TTR("Previous Scene Tab"), KeyModifierMask::CMD_OR_CTRL + KeyModifierMask::SHIFT + Key::TAB);
	ED_SHORTCUT("editor/filter_files", TTR("Focus FileSystem Filter"), KeyModifierMask::CMD_OR_CTRL + KeyModifierMask::ALT + Key::P);
	command_palette = EditorCommandPalette::get_singleton();
	command_palette->set_title(TTR("Command Palette"));
	gui_base->add_child(command_palette);