### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
}
			img->convert(Image::FORMAT_RGB8);
			
			String temp_path = EditorPaths::get_singleton()->get_cache_dir();
			String cache_base = ProjectSettings::get_singleton()->globalize_path(p_file).md5_text();
			cache_base = temp_path.path_join("resthumb-" + cache_base);
			
			post_process_preview(img);
			img->save_png(cache_base + ".png");
		}
	}
	save.step(TTR("Saving Scene"), 4);
	_save_scene(p_file, p_idx);
	if (!singleton->cmdline_export_mode) {
		EditorResourcePreview::get_singleton()->check_for_invalidation(p_file);
	}
}
bool EditorNode::_validate_scene_recursive(const String &p_filename, Node *p_node) {
	for (int i = 0; i < p_node->get_child_count(); i++) {
		Node *child = p_node->get_child(i);
		if (child->get_scene_file_path() == p_filename) {
			return true;
		}
		if (_validate_scene_recursive(p_filename, child)) {
			return true;
		}
	}
	return false;
}
int EditorNode::_save_external_resources() {