### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ERR_FAIL_COND(!p_dock);
	Size2 borders = Size2(4, 4) * EDSCALE;
	
	Size2 dock_size = p_dock->get_size() + borders * 2;
	Point2 dock_screen_pos = p_dock->get_screen_position();
	int dock_index = p_dock->get_index() - 1;
	dock_slot[p_slot_index]->remove_child(p_dock);
	WindowWrapper *wrapper = memnew(WindowWrapper);
	wrapper->set_window_title(vformat(TTR("%s - Godot Engine"), p_dock->get_name()));
	wrapper->set_margins_enabled(true);
	gui_base->add_child(wrapper);
	wrapper->set_wrapped_control(p_dock);
	wrapper->set_meta("dock_slot", p_slot_index);
	wrapper->set_meta("dock_index", dock_index);
	wrapper->set_meta("dock_name", p_dock->get_name().operator String());
	wrapper->connect("window_close_requested", callable_mp(this, &EditorNode::_dock_floating_close_request).bind(wrapper));
	dock_select_popup->hide();
	if (p_show_window) {
		wrapper->restore_window(Rect2i(dock_screen_pos, dock_size), get_window()->get_current_screen());
	}
	_update_dock_containers();
	floating_docks.push_back(wrapper);
	_edit_current();
}
void EditorNode::_update_dock_containers() {