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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

if (p_debug_flags & DEBUG_FLAG_REMOTE_DEBUG) {
				int dbg_port = EDITOR_GET("network/debug/remote_port");
				args.clear();
				args.push_back("-s");
				args.push_back(devices[p_device].id);
				args.push_back("reverse");
				args.push_back("tcp:" + itos(dbg_port));
				args.push_back("tcp:" + itos(dbg_port));
				output.clear();
				OS::get_singleton()->execute(adb, args, &output, &rv, true);
				print_verbose(output);
				print_line("Reverse result: " + itos(rv));
			}
			if (p_debug_flags & DEBUG_FLAG_DUMB_CLIENT) {
				int fs_port = EDITOR_GET("filesystem/file_server/port");
				args.clear();
				args.push_back("-s");
				args.push_back(devices[p_device].id);
				args.push_back("reverse");
				args.push_back("tcp:" + itos(fs_port));
				args.push_back("tcp:" + itos(fs_port));
				output.clear();
				err = OS::get_singleton()->execute(adb, args, &output, &rv, true);
				print_verbose(output);
				print_line("Reverse result2: " + itos(rv));
			}
		} else {
			static const char *const msg = "--- Device API < 21; debugging over Wi-Fi ---";
			EditorNode::get_singleton()->get_log()->add_message(msg, EditorLog::MSG_TYPE_EDITOR);
			print_line(String(msg).to_upper());