### Godot version

4.1.1-stable

### System information

Windows 10

### Issue description

When the project loads in editor, all the settings defined in project settings will be loaded over the default values, but when running the game nearly 95% of them will be ignored resulting in just loading the default settings.

here it's just loading only 4 variables from project setting and i have added the fifth in this pull request https://github.com/godotengine/godot/pull/80151
![image](https://github.com/godotengine/godot/assets/53877170/926168a6-e6d3-4983-b59d-7fd202db681d)

if (state.canvas_instance_batches.size() == 0) {
		state.canvas_instance_batches.push_back(Batch());
		return;
	}
	if (r_batch_broken || state.canvas_instance_batches[state.current_batch_index].instance_count == 0) {
		return;
	}
	r_batch_broken = true;
	
	Batch new_batch = state.canvas_instance_batches[state.current_batch_index];
	new_batch.instance_count = 0;
	new_batch.start = state.canvas_instance_batches[state.current_batch_index].start + state.canvas_instance_batches[state.current_batch_index].instance_count;
	new_batch.instance_buffer_index = state.current_instance_buffer_index;
	state.current_batch_index++;
	state.canvas_instance_batches.push_back(new_batch);
}
void RasterizerCanvasGLES3::_enable_attributes(uint32_t p_start, bool p_primitive, uint32_t p_rate) {
	uint32_t split = p_primitive ? 11 : 12;
	for (uint32_t i = 6; i < split; i++) {
		glEnableVertexAttribArray(i);
		glVertexAttribPointer(i, 4, GL_FLOAT, GL_FALSE, sizeof(InstanceData), CAST_INT_TO_UCHAR_PTR(p_start + (i - 6) * 4 * sizeof(float)));
		glVertexAttribDivisor(i, p_rate);
	}
	for (uint32_t i = split; i <= 13; i++) {
		glEnableVertexAttribArray(i);
		glVertexAttribIPointer(i, 4, GL_UNSIGNED_INT, sizeof(InstanceData), CAST_INT_TO_UCHAR_PTR(p_start + (i - 6) * 4 * sizeof(float)));
		glVertexAttribDivisor(i, p_rate);
	}
}
RID RasterizerCanvasGLES3::light_create() {