### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_MAIN_THREAD_GUARD;
	_internal_set_size(p_size);
}
void SubViewport::set_size_force(const Size2i &p_size) {
	ERR_MAIN_THREAD_GUARD;
	// Use only for setting the size from the parent SubViewportContainer with enabled stretch mode.
	// Don't expose function to scripting.
	_internal_set_size(p_size, true);
}
void SubViewport::_internal_set_size(const Size2i &p_size, bool p_force) {
	SubViewportContainer *c = Object::cast_to<SubViewportContainer>(get_parent());
	if (!p_force && c && c->is_stretch_enabled()) {
#ifdef DEBUG_ENABLED
		WARN_PRINT("Can't change the size of a `SubViewport` with a `SubViewportContainer` parent that has `stretch` enabled. Set `SubViewportContainer.stretch` to `false` to allow changing the size manually.");
#endif // DEBUG_ENABLED
		return;
	}
	_set_size(p_size, _get_size_2d_override(), true);
	if (c) {
		c->update_minimum_size();
	}
}
Size2i SubViewport::get_size() const {