### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Node *old_edited_scene_root = get_editor_data().get_edited_scene_root();
	if (old_edited_scene_root) {
		if (old_edited_scene_root->get_parent() == scene_root) {
			scene_root->remove_child(old_edited_scene_root);
		}
		old_edited_scene_root->disconnect(SNAME("replacing_by"), callable_mp(this, &EditorNode::set_edited_scene));
	}
	get_editor_data().set_edited_scene_root(p_scene);
	if (Object::cast_to<Popup>(p_scene)) {
		Object::cast_to<Popup>(p_scene)->show();
	}
	SceneTreeDock::get_singleton()->set_edited_scene(p_scene);
	if (get_tree()) {
		get_tree()->set_edited_scene_root(p_scene);
	}
	if (p_scene) {
		if (p_scene->get_parent() != scene_root) {
			scene_root->add_child(p_scene, true);
		}
		p_scene->connect(SNAME("replacing_by"), callable_mp(this, &EditorNode::set_edited_scene));
	}
}
int EditorNode::_get_current_main_editor() {