### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
switch (p_what) {
		case NOTIFICATION_PROCESS: {
			if (opening_prev && !confirmation->is_visible()) {
				opening_prev = false;
			}
			bool global_unsaved = EditorUndoRedoManager::get_singleton()->is_history_unsaved(EditorUndoRedoManager::GLOBAL_HISTORY);
			bool scene_or_global_unsaved = global_unsaved || EditorUndoRedoManager::get_singleton()->is_history_unsaved(editor_data.get_current_edited_scene_history_id());
			if (unsaved_cache != scene_or_global_unsaved) {
				unsaved_cache = scene_or_global_unsaved;
				_update_title();
			}
			if (editor_data.is_scene_changed(-1)) {
				_update_scene_tabs();
			}
			
			uint64_t frame = Engine::get_singleton()->get_frames_drawn();
			uint64_t tick = OS::get_singleton()->get_ticks_msec();
			if (frame != update_spinner_step_frame && (tick - update_spinner_step_msec) > (1000 / 8)) {
				update_spinner_step++;