### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
right_hsplit->add_child(right_l_vsplit);
	dock_slot[DOCK_SLOT_RIGHT_UL] = memnew(TabContainer);
	right_l_vsplit->add_child(dock_slot[DOCK_SLOT_RIGHT_UL]);
	dock_slot[DOCK_SLOT_RIGHT_BL] = memnew(TabContainer);
	right_l_vsplit->add_child(dock_slot[DOCK_SLOT_RIGHT_BL]);
	right_r_vsplit = memnew(VSplitContainer);
	right_hsplit->add_child(right_r_vsplit);
	dock_slot[DOCK_SLOT_RIGHT_UR] = memnew(TabContainer);
	right_r_vsplit->add_child(dock_slot[DOCK_SLOT_RIGHT_UR]);
	dock_slot[DOCK_SLOT_RIGHT_BR] = memnew(TabContainer);
	right_r_vsplit->add_child(dock_slot[DOCK_SLOT_RIGHT_BR]);
	
	vsplits.push_back(left_l_vsplit);
	vsplits.push_back(left_r_vsplit);
	vsplits.push_back(right_l_vsplit);
	vsplits.push_back(right_r_vsplit);
	hsplits.push_back(left_l_hsplit);
	hsplits.push_back(left_r_hsplit);
	hsplits.push_back(main_hsplit);
	hsplits.push_back(right_hsplit);
	for (int i = 0; i < vsplits.size(); i++) {
		vsplits[i]->connect("dragged", callable_mp(this, &EditorNode::_dock_split_dragged));
		hsplits[i]->connect("dragged", callable_mp(this, &EditorNode::_dock_split_dragged));
	}
	dock_select_popup = memnew(PopupPanel);
	gui_base->add_child(dock_select_popup);
	VBoxContainer *dock_vb = memnew(VBoxContainer);
	dock_select_popup->add_child(dock_vb);
	HBoxContainer *dock_hb = memnew(HBoxContainer);
	dock_tab_move_left = memnew(Button);