### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
saving_resource = Ref<Resource>();
			ObjectID current_id = editor_history.get_current();
			Object *current_obj = current_id.is_valid() ? ObjectDB::get_instance(current_id) : nullptr;
			ERR_FAIL_COND(!current_obj);
			current_obj->notify_property_list_changed();
		} break;
		case SETTINGS_LAYOUT_SAVE: {
			if (p_file.is_empty()) {
				return;
			}
			Ref<ConfigFile> config;
			config.instantiate();
			Error err = config->load(EditorSettings::get_singleton()->get_editor_layouts_config());
			if (err == ERR_FILE_CANT_OPEN || err == ERR_FILE_NOT_FOUND) {
				config.instantiate();
			} else if (err != OK) {
				show_warning(TTR("An error occurred while trying to save the editor layout.\nMake sure the editor's user data path is writable."));
				return;
			}
			_save_docks_to_config(config, p_file);
			config->save(EditorSettings::get_singleton()->get_editor_layouts_config());
			layout_dialog->hide();
			_update_layouts_menu();
			if (p_file == "Default") {
				show_warning(TTR("Default editor layout overridden.\nTo restore the Default layout to its base settings, use the Delete Layout option and delete the Default layout."));
			}
		} break;
		case SETTINGS_LAYOUT_DELETE: {
			if (p_file.is_empty()) {
				return;