### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
}
			_proceed_closing_scene_tabs();
		} break;
		case FILE_QUIT: {
			project_run_bar->stop_playing();
			_exit_editor(EXIT_SUCCESS);
		} break;
		case RUN_PROJECT_MANAGER: {
			project_run_bar->stop_playing();
			_exit_editor(EXIT_SUCCESS);
			String exec = OS::get_singleton()->get_executable_path();
			List<String> args;
			for (const String &a : Main::get_forwardable_cli_arguments(Main::CLI_SCOPE_TOOL)) {
				args.push_back(a);
			}
			String exec_base_dir = exec.get_base_dir();
			if (!exec_base_dir.is_empty()) {
				args.push_back("--path");
				args.push_back(exec_base_dir);
			}
			args.push_back("--project-manager");
			Error err = OS::get_singleton()->create_instance(args);
			ERR_FAIL_COND(err);
		} break;
		case RELOAD_CURRENT_PROJECT: {
			restart_editor();
		} break;
	}
}
void EditorNode::_update_file_menu_opened() {