### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
const Size2 add_button_size = Size2(0, scene_tabs->get_size().y);
	if (scene_tabs->get_offset_buttons_visible()) {
		
		if (scene_tab_add->get_parent() == scene_tabs) {
			scene_tabs->remove_child(scene_tab_add);
			scene_tab_add_ph->add_child(scene_tab_add);
			scene_tab_add->set_rect(Rect2(Point2(), add_button_size));
		}
	} else {
		
		if (scene_tab_add->get_parent() == scene_tab_add_ph) {
			scene_tab_add_ph->remove_child(scene_tab_add);
			scene_tabs->add_child(scene_tab_add);
		}
		if (scene_tabs->get_tab_count() == 0) {
			scene_tab_add->set_rect(Rect2(Point2(), add_button_size));
			return;
		}
		Rect2 last_tab = scene_tabs->get_tab_rect(scene_tabs->get_tab_count() - 1);
		int hsep = scene_tabs->get_theme_constant(SNAME("h_separation"));
		if (scene_tabs->is_layout_rtl()) {
			scene_tab_add->set_rect(Rect2(Point2(last_tab.position.x - scene_tab_add->get_size().x - hsep, last_tab.position.y), add_button_size));
		} else {
			scene_tab_add->set_rect(Rect2(Point2(last_tab.position.x + last_tab.size.width + hsep, last_tab.position.y), add_button_size));
		}
	}
	
	scene_tabs->connect("tab_changed", callable_mp(this, &EditorNode::_scene_tab_changed));
}
void EditorNode::_version_control_menu_option(int p_idx) {