### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
InspectorDock::get_singleton()->edit_resource(p_resource);
}
void EditorNode::save_resource_in_path(const Ref<Resource> &p_resource, const String &p_path) {
	editor_data.apply_changes_in_editors();
	if (saving_resources_in_path.has(p_resource)) {
		return;
	}
	saving_resources_in_path.insert(p_resource);
	int flg = 0;
	if (EDITOR_GET("filesystem/on_save/compress_binary_resources")) {
		flg |= ResourceSaver::FLAG_COMPRESS;
	}
	String path = ProjectSettings::get_singleton()->localize_path(p_path);
	Error err = ResourceSaver::save(p_resource, path, flg | ResourceSaver::FLAG_REPLACE_SUBRESOURCE_PATHS);
	if (err != OK) {
		if (ResourceLoader::is_imported(p_resource->get_path())) {
			show_accept(TTR("Imported resources can't be saved."), TTR("OK"));
		} else {
			show_accept(TTR("Error saving resource!"), TTR("OK"));
		}
		saving_resources_in_path.erase(p_resource);
		return;
	}
	((Resource *)p_resource.ptr())->set_path(path);
	saving_resources_in_path.erase(p_resource);
	_resource_saved(p_resource, path);
	emit_signal(SNAME("resource_saved"), p_resource);
	editor_data.notify_resource_saved(p_resource);
}
void EditorNode::save_resource(const Ref<Resource> &p_resource) {