### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
}
	if (!p_ignore_broken_deps && dependency_errors.has(lpath)) {
		current_menu_option = -1;
		Vector<String> errors;
		for (const String &E : dependency_errors[lpath]) {
			errors.push_back(E);
		}
		dependency_error->show(DependencyErrorDialog::MODE_SCENE, lpath, errors);
		opening_prev = false;
		if (prev != -1) {
			set_current_scene(prev);
			editor_data.remove_scene(idx);
		}
		return ERR_FILE_MISSING_DEPENDENCIES;
	}
	dependency_errors.erase(lpath); 
	for (KeyValue<String, HashSet<String>> &E : dependency_errors) {
		String txt = vformat(TTR("Scene '%s' has broken dependencies:"), E.key) + "\n";
		for (const String &F : E.value) {
			txt += "\t" + F + "\n";
		}
		add_io_error(txt);
	}
	if (ResourceCache::has(lpath)) {
		
		Ref<PackedScene> ps = ResourceCache::get_ref(lpath);
		if (ps.is_valid()) {
			ps->replace_state(sdata->get_state());
			ps->set_last_modified_time(sdata->get_last_modified_time());
			sdata = ps;