___

***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

___

### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

zlib_filefunc_def io = zipio_create_io(&io_fa);
	if (ep.step(TTR("Creating APK..."), 0)) {
		return ERR_SKIP;
	}
	unzFile pkg = unzOpen2(src_apk.utf8().get_data(), &io);
	if (!pkg) {
		add_message(EXPORT_MESSAGE_ERROR, TTR("Export"), vformat(TTR("Could not find template APK to export: \"%s\"."), src_apk));
		return ERR_FILE_NOT_FOUND;
	}
	int ret = unzGoToFirstFile(pkg);
	Ref<FileAccess> io2_fa;
	zlib_filefunc_def io2 = zipio_create_io(&io2_fa);
	String tmp_unaligned_path = EditorPaths::get_singleton()->get_cache_dir().path_join("tmpexport-unaligned." + uitos(OS::get_singleton()->get_unix_time()) + ".apk");
#define CLEANUP_AND_RETURN(m_err)                            \
	{                                                        \
		DirAccess::remove_file_or_error(tmp_unaligned_path); \
		return m_err;                                        \
	}                                                        \
	((void)0)
	zipFile unaligned_apk = zipOpen2(tmp_unaligned_path.utf8().get_data(), APPEND_STATUS_CREATE, nullptr, &io2);
	String cmdline = p_preset->get("command_line/extra_args");
	String version_name = p_preset->get("version/name");
	String package_name = p_preset->get("package/unique_name");
	String apk_expansion_pkey = p_preset->get("apk_expansion/public_key");
	Vector<ABI> invalid_abis(enabled_abis);
	while (ret == UNZ_OK) {
		
		unz_file_info info;
		char fname[16384];
		ret = unzGetCurrentFileInfo(pkg, &info, fname, 16384, nullptr, 0, nullptr, 0);