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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

template_err += TTR("Custom release template not found.") + "\n";
			}
		} else {
			has_export_templates |= exists_export_template("android_release.apk", &template_err);
		}
		r_missing_templates = !has_export_templates;
		valid = dvalid || rvalid || has_export_templates;
		if (!valid) {
			err += template_err;
		}
	} else {
		bool installed_android_build_template = FileAccess::exists("res://android/build/build.gradle");
		if (!installed_android_build_template) {
			r_missing_templates = !exists_export_template("android_source.zip", &err);
			err += TTR("Android build template not installed in the project. Install it from the Project menu.") + "\n";
		} else {
			r_missing_templates = false;
		}
		valid = installed_android_build_template && !r_missing_templates;
	}
	
	String dk = p_preset->get_or_env("keystore/debug", ENV_ANDROID_KEYSTORE_DEBUG_PATH);
	String dk_user = p_preset->get_or_env("keystore/debug_user", ENV_ANDROID_KEYSTORE_DEBUG_USER);
	String dk_password = p_preset->get_or_env("keystore/debug_password", ENV_ANDROID_KEYSTORE_DEBUG_PASS);
	if ((dk.is_empty() || dk_user.is_empty() || dk_password.is_empty()) && (!dk.is_empty() || !dk_user.is_empty() || !dk_password.is_empty())) {
		valid = false;
		err += TTR("Either Debug Keystore, Debug User AND Debug Password settings must be configured OR none of them.") + "\n";
	}
	
	if ((p_debug || !dk.is_empty()) && !FileAccess::exists(dk)) {