### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_MAIN_THREAD_GUARD;
	bool request_update = gui.canvas_parents_with_dirty_order.is_empty();
	gui.canvas_parents_with_dirty_order.insert(p_node->get_instance_id());
	if (request_update) {
		MessageQueue::get_singleton()->push_callable(callable_mp(this, &Viewport::_process_dirty_canvas_parent_orders));
	}
}
void Viewport::_update_audio_listener_2d() {
	if (AudioServer::get_singleton()) {
		AudioServer::get_singleton()->notify_listener_changed();
	}
}
void Viewport::set_as_audio_listener_2d(bool p_enable) {
	ERR_MAIN_THREAD_GUARD;
	if (p_enable == is_audio_listener_2d_enabled) {
		return;
	}
	is_audio_listener_2d_enabled = p_enable;
	_update_audio_listener_2d();
}
bool Viewport::is_audio_listener_2d() const {
	ERR_READ_THREAD_GUARD_V(false);
	return is_audio_listener_2d_enabled;
}
AudioListener2D *Viewport::get_audio_listener_2d() const {
	ERR_READ_THREAD_GUARD_V(nullptr);
	return audio_listener_2d;
}
void Viewport::enable_canvas_transform_override(bool p_enable) {