### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
gui_base->add_child(project_settings_editor);
	scene_import_settings = memnew(SceneImportSettings);
	gui_base->add_child(scene_import_settings);
	audio_stream_import_settings = memnew(AudioStreamImportSettings);
	gui_base->add_child(audio_stream_import_settings);
	fontdata_import_settings = memnew(DynamicFontImportSettings);
	gui_base->add_child(fontdata_import_settings);
	export_template_manager = memnew(ExportTemplateManager);
	gui_base->add_child(export_template_manager);
	feature_profile_manager = memnew(EditorFeatureProfileManager);
	gui_base->add_child(feature_profile_manager);
	build_profile_manager = memnew(EditorBuildProfileManager);
	gui_base->add_child(build_profile_manager);
	about = memnew(EditorAbout);
	gui_base->add_child(about);
	feature_profile_manager->connect("current_feature_profile_changed", callable_mp(this, &EditorNode::_feature_profile_changed));
#if !defined(ANDROID_ENABLED) && !defined(WEB_ENABLED)
	fbx_importer_manager = memnew(FBXImporterManager);
	gui_base->add_child(fbx_importer_manager);
#endif
	warning = memnew(AcceptDialog);
	warning->set_unparent_when_invisible(true);
	warning->add_button(TTR("Copy Text"), true, "copy");
	warning->connect("custom_action", callable_mp(this, &EditorNode::_copy_warning));
	ED_SHORTCUT("editor/next_tab", TTR("Next Scene Tab"), KeyModifierMask::CMD_OR_CTRL + Key::TAB);
	ED_SHORTCUT("editor/prev_tab", TTR("Previous Scene Tab"), KeyModifierMask::CMD_OR_CTRL + KeyModifierMask::SHIFT + Key::TAB);
	ED_SHORTCUT("editor/filter_files", TTR("Focus FileSystem Filter"), KeyModifierMask::CMD_OR_CTRL + KeyModifierMask::ALT + Key::P);
	command_palette = EditorCommandPalette::get_singleton();
	command_palette->set_title(TTR("Command Palette"));
	gui_base->add_child(command_palette);