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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

_get_android_orientation_value(DisplayServer::ScreenOrientation(int(GLOBAL_GET("display/window/handheld/orientation"))));
	bool screen_support_small = p_preset->get("screen/support_small");
	bool screen_support_normal = p_preset->get("screen/support_normal");
	bool screen_support_large = p_preset->get("screen/support_large");
	bool screen_support_xlarge = p_preset->get("screen/support_xlarge");
	bool backup_allowed = p_preset->get("user_data_backup/allow");
	int app_category = p_preset->get("package/app_category");
	bool retain_data_on_uninstall = p_preset->get("package/retain_data_on_uninstall");
	bool exclude_from_recents = p_preset->get("package/exclude_from_recents");
	bool is_resizeable = bool(GLOBAL_GET("display/window/size/resizable"));
	Vector<String> perms;
	
	_get_permissions(p_preset, p_give_internet, perms);
	bool has_read_write_storage_permission = _has_read_write_storage_permission(perms);
	while (ofs < (uint32_t)p_manifest.size()) {
		uint32_t chunk = decode_uint32(&p_manifest[ofs]);
		uint32_t size = decode_uint32(&p_manifest[ofs + 4]);
		switch (chunk) {
			case CHUNK_STRINGS: {
				int iofs = ofs + 8;
				string_count = decode_uint32(&p_manifest[iofs]);
				string_flags = decode_uint32(&p_manifest[iofs + 8]);
				string_data_offset = decode_uint32(&p_manifest[iofs + 12]);
				uint32_t st_offset = iofs + 20;
				string_table.resize(string_count);
				uint32_t string_end = 0;
				string_table_begins = st_offset;
				for (uint32_t i = 0; i < string_count; i++) {
					uint32_t string_at = decode_uint32(&p_manifest[st_offset + i * 4]);
					string_at += st_offset + string_count * 4;