### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
if (current_tile_data_editor) {
		
		for (int i = 0; i < tile_set_atlas_source->get_tiles_count(); i++) {
			Vector2i coords = tile_set_atlas_source->get_tile_id(i);
			for (int j = 0; j < tile_set_atlas_source->get_alternative_tiles_count(coords); j++) {
				int alternative_tile = tile_set_atlas_source->get_alternative_tile_id(coords, j);
				if (alternative_tile == 0) {
					continue;
				}
				Rect2i rect = tile_atlas_view->get_alternative_tile_rect(coords, alternative_tile);
				Vector2 position = rect.get_center() + tile_set_atlas_source->get_tile_data(coords, alternative_tile)->get_texture_origin();
				Transform2D xform = alternative_tiles_control->get_parent_control()->get_transform();
				xform.translate_local(position);
				if (tools_button_group->get_pressed_button() == tool_select_button && selection.has({ coords, alternative_tile })) {
					continue;
				}
				TileMapCell cell;
				cell.source_id = tile_set_atlas_source_id;