### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
}
	
	for (int i = 0; i < index_sets.size(); i++) {
		RBSet<int> iset = index_sets[i];
		while (iset.size() > 1) {
			
			for (const int &E : iset) {
				int set_idx = E;
				String scene_name = r_filenames[set_idx];
				String full_path = p_full_paths[set_idx];
				
				scene_name = scene_name.get_basename();
				if (full_path.begins_with("res:")) {
					full_path = full_path.substr(6);
				}
				full_path = full_path.get_basename();
				
				scene_name = scene_name.trim_suffix("/");
				full_path = full_path.trim_suffix("/");
				int scene_name_size = scene_name.size();
				int full_path_size = full_path.size();
				int difference = full_path_size - scene_name_size;
				
				
				
				
				if (difference > 0) {
					String parent = full_path.substr(0, difference);
					int slash_idx = parent.rfind("/");
					slash_idx = parent.rfind("/", slash_idx - 1);