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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

switch (category_index) {
		case APP_CATEGORY_ACCESSIBILITY:
			return "accessibility";
		case APP_CATEGORY_AUDIO:
			return "audio";
		case APP_CATEGORY_IMAGE:
			return "image";
		case APP_CATEGORY_MAPS:
			return "maps";
		case APP_CATEGORY_NEWS:
			return "news";
		case APP_CATEGORY_PRODUCTIVITY:
			return "productivity";
		case APP_CATEGORY_SOCIAL:
			return "social";
		case APP_CATEGORY_VIDEO:
			return "video";
		case APP_CATEGORY_GAME:
		default:
			return "game";
	}
}
Error create_directory(const String &p_dir) {