### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
{
		
		Ref<ResourceImporterTexture> import_texture;
		import_texture.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_texture);
		Ref<ResourceImporterLayeredTexture> import_cubemap;
		import_cubemap.instantiate();
		import_cubemap->set_mode(ResourceImporterLayeredTexture::MODE_CUBEMAP);
		ResourceFormatImporter::get_singleton()->add_importer(import_cubemap);
		Ref<ResourceImporterLayeredTexture> import_array;
		import_array.instantiate();
		import_array->set_mode(ResourceImporterLayeredTexture::MODE_2D_ARRAY);
		ResourceFormatImporter::get_singleton()->add_importer(import_array);
		Ref<ResourceImporterLayeredTexture> import_cubemap_array;
		import_cubemap_array.instantiate();
		import_cubemap_array->set_mode(ResourceImporterLayeredTexture::MODE_CUBEMAP_ARRAY);
		ResourceFormatImporter::get_singleton()->add_importer(import_cubemap_array);
		Ref<ResourceImporterLayeredTexture> import_3d;
		import_3d.instantiate();
		import_3d->set_mode(ResourceImporterLayeredTexture::MODE_3D);
		ResourceFormatImporter::get_singleton()->add_importer(import_3d);
		Ref<ResourceImporterImage> import_image;
		import_image.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_image);
		Ref<ResourceImporterTextureAtlas> import_texture_atlas;
		import_texture_atlas.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_texture_atlas);
		Ref<ResourceImporterDynamicFont> import_font_data_dynamic;
		import_font_data_dynamic.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_font_data_dynamic);