### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
pending_addons.push_back(p_addon);
				return;
			}
			show_warning(vformat(TTR("Unable to load addon script from path: '%s'. This might be due to a code error in that script.\nDisabling the addon at '%s' to prevent further errors."), script_path, addon_path));
			_remove_plugin_from_enabled(addon_path);
			return;
		}
		
		if (String(scr->get_instance_base_type()) != "EditorPlugin") {
			show_warning(vformat(TTR("Unable to load addon script from path: '%s' Base type is not EditorPlugin."), script_path));
			return;
		}
		if (!scr->is_tool()) {
			show_warning(vformat(TTR("Unable to load addon script from path: '%s' Script is not in tool mode."), script_path));
			return;
		}
	}
	EditorPlugin *ep = memnew(EditorPlugin);
	ep->set_script(scr);
	addon_name_to_plugin[addon_path] = ep;
	add_editor_plugin(ep, p_config_changed);
	_update_addon_config();
}
bool EditorNode::is_addon_plugin_enabled(const String &p_addon) const {
	if (p_addon.begins_with("res:")) {
		return addon_name_to_plugin.has(p_addon);
	}
	return addon_name_to_plugin.has("res:addons/" + p_addon + "/plugin.cfg");
}
void EditorNode::_remove_edited_scene(bool p_change_tab) {