### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
gdextension_export_plugin.instantiate();
	EditorExport::get_singleton()->add_export_plugin(gdextension_export_plugin);
	Ref<DedicatedServerExportPlugin> dedicated_server_export_plugin;
	dedicated_server_export_plugin.instantiate();
	EditorExport::get_singleton()->add_export_plugin(dedicated_server_export_plugin);
	Ref<PackedSceneEditorTranslationParserPlugin> packed_scene_translation_parser_plugin;
	packed_scene_translation_parser_plugin.instantiate();
	EditorTranslationParser::get_singleton()->add_parser(packed_scene_translation_parser_plugin, EditorTranslationParser::STANDARD);
	_edit_current();
	current = nullptr;
	saving_resource = Ref<Resource>();
	set_process(true);
	open_imported = memnew(ConfirmationDialog);
	open_imported->set_ok_button_text(TTR("Open Anyway"));
	new_inherited_button = open_imported->add_button(TTR("New Inherited"), !DisplayServer::get_singleton()->get_swap_cancel_ok(), "inherit");
	open_imported->connect("confirmed", callable_mp(this, &EditorNode::_open_imported));
	open_imported->connect("custom_action", callable_mp(this, &EditorNode::_inherit_imported));
	gui_base->add_child(open_imported);
	quick_open = memnew(EditorQuickOpen);
	gui_base->add_child(quick_open);
	quick_open->connect("quick_open", callable_mp(this, &EditorNode::_quick_opened));
	_update_recent_scenes();
	set_process_shortcut_input(true);
	load_errors = memnew(RichTextLabel);
	load_error_dialog = memnew(AcceptDialog);
	load_error_dialog->set_unparent_when_invisible(true);
	load_error_dialog->add_child(load_errors);
	load_error_dialog->set_title(TTR("Load Errors"));
	execute_outputs = memnew(RichTextLabel);
	execute_outputs->set_selection_enabled(true);