### Godot version

4.1.stable

### System information

Godot v4.1.stable - Windows 10.0.19045 - Vulkan (Compatibility) - Intel(R) HD Graphics 4600 (Intel Corporation; 20.19.15.5126) - Intel(R) Core(TM) i3-4330 CPU @ 3.50GHz (4 Threads)

### Issue description

When I try to join 68 images of 128x128 resolution in an atlas it returns a transparent 1x1 image

I tried using few images and it doesn't work either

It doesn't work either with 16x16, 32x32, 64x64 resolutions

- Google Translate :)

### Steps to reproduce


https://github.com/godotengine/godot/assets/136469511/ca5f64c2-f0c5-486f-a13e-b941ae2dea7d



### Minimal reproduction project

N/A
atlas_source_proxy_object->edit(tile_set, tile_set_atlas_source, tile_set_atlas_source_id);
}
void TileSetAtlasSourceEditor::_update_fix_selected_and_hovered_tiles() {
	
	for (RBSet<TileSelection>::Element *E = selection.front(); E;) {
		RBSet<TileSelection>::Element *N = E->next();
		TileSelection selected = E->get();
		if (!tile_set_atlas_source->has_tile(selected.tile) || !tile_set_atlas_source->has_alternative_tile(selected.tile, selected.alternative)) {
			selection.erase(E);
		}
		E = N;
	}
	
	if (!tile_set_atlas_source->has_tile(hovered_base_tile_coords)) {
		hovered_base_tile_coords = TileSetSource::INVALID_ATLAS_COORDS;
	}
	Vector2i coords = Vector2i(hovered_alternative_tile_coords.x, hovered_alternative_tile_coords.y);
	int alternative = hovered_alternative_tile_coords.z;
	if (!tile_set_atlas_source->has_tile(coords) || !tile_set_atlas_source->has_alternative_tile(coords, alternative)) {
		hovered_alternative_tile_coords = Vector3i(TileSetSource::INVALID_ATLAS_COORDS.x, TileSetSource::INVALID_ATLAS_COORDS.y, TileSetSource::INVALID_TILE_ALTERNATIVE);
	}
}
void TileSetAtlasSourceEditor::_update_atlas_source_inspector() {
	
	bool inspector_visible = tools_button_group->get_pressed_button() == tool_setup_atlas_source_button;
	atlas_source_inspector->set_visible(inspector_visible);
	atlas_source_inspector->set_read_only(read_only);
}
void TileSetAtlasSourceEditor::_update_tile_inspector() {