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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

encode_uint16(20, &p_manifest.write[ofs + 26]); 
							encode_uint16(attr_count, &p_manifest.write[ofs + 28]); 
							encode_uint16(0, &p_manifest.write[ofs + 30]); 
							encode_uint16(0, &p_manifest.write[ofs + 32]); 
							encode_uint16(0, &p_manifest.write[ofs + 34]); 
							
							encode_uint32(ns_android_string, &p_manifest.write[ofs + 36]); 
							encode_uint32(attr_name_string, &p_manifest.write[ofs + 40]); 
							encode_uint32(feature_string, &p_manifest.write[ofs + 44]); 
							encode_uint16(8, &p_manifest.write[ofs + 48]); 
							p_manifest.write[ofs + 50] = 0; 
							p_manifest.write[ofs + 51] = 0x03; 
							encode_uint32(feature_string, &p_manifest.write[ofs + 52]); 
							
							encode_uint32(ns_android_string, &p_manifest.write[ofs + 56]); 
							encode_uint32(attr_required_string, &p_manifest.write[ofs + 60]); 
							encode_uint32(required_value, &p_manifest.write[ofs + 64]); 
							encode_uint16(8, &p_manifest.write[ofs + 68]); 
							p_manifest.write[ofs + 70] = 0; 
							p_manifest.write[ofs + 71] = 0x03; 
							encode_uint32(required_value, &p_manifest.write[ofs + 72]); 
							ofs += 76;
							if (has_version_attribute) {
								
								encode_uint32(ns_android_string, &p_manifest.write[ofs]); 
								encode_uint32(attr_version_string, &p_manifest.write[ofs + 4]); 
								encode_uint32(version_value, &p_manifest.write[ofs + 8]); 
								encode_uint16(8, &p_manifest.write[ofs + 12]); 
								p_manifest.write[ofs + 14] = 0; 
								p_manifest.write[ofs + 15] = 0x03;