### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
case FILE_EXPORT_PROJECT: {
			project_export->popup_export();
		} break;
		case FILE_EXTERNAL_OPEN_SCENE: {
			if (unsaved_cache && !p_confirmed) {
				confirmation->set_ok_button_text(TTR("Open"));
				confirmation->set_text(TTR("Current scene not saved. Open anyway?"));
				confirmation->popup_centered();
				break;
			}
			bool oprev = opening_prev;
			Error err = load_scene(external_file);
			if (err == OK && oprev) {
				previous_scenes.pop_back();
				opening_prev = false;
			}
		} break;
		case EDIT_UNDO: {
			if ((int)Input::get_singleton()->get_mouse_button_mask() & 0x7) {
				log->add_message(TTR("Can't undo while mouse buttons are pressed."), EditorLog::MSG_TYPE_EDITOR);
			} else {
				EditorUndoRedoManager *undo_redo = EditorUndoRedoManager::get_singleton();
				String action = undo_redo->get_current_action_name();
				int id = undo_redo->get_current_action_history_id();
				if (!undo_redo->undo()) {
					log->add_message(TTR("Nothing to undo."), EditorLog::MSG_TYPE_EDITOR);
				} else if (!action.is_empty()) {
					switch (id) {
						case EditorUndoRedoManager::GLOBAL_HISTORY:
							log->add_message(vformat(TTR("Global Undo: %s"), action), EditorLog::MSG_TYPE_EDITOR);