### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
generic_tile_polygon_editor = memnew(GenericTilePolygonEditor);
	generic_tile_polygon_editor->set_use_undo_redo(false);
	generic_tile_polygon_editor->clear_polygons();
	add_child(generic_tile_polygon_editor);
	generic_tile_polygon_editor->connect("polygons_changed", callable_mp(this, &EditorPropertyTilePolygon::_polygons_changed));
	
	_add_focusable_children(generic_tile_polygon_editor);
}
bool EditorInspectorPluginTileData::can_handle(Object *p_object) {
	return Object::cast_to<TileSetAtlasSourceEditor::AtlasTileProxyObject>(p_object) != nullptr;
}
bool EditorInspectorPluginTileData::parse_property(Object *p_object, const Variant::Type p_type, const String &p_path, const PropertyHint p_hint, const String &p_hint_text, const BitField<PropertyUsageFlags> p_usage, const bool p_wide) {
	Vector<String> components = String(p_path).split("/", true, 2);
	if (components.size() == 2 && components[0].begins_with("occlusion_layer_") && components[0].trim_prefix("occlusion_layer_").is_valid_int()) {
		
		int layer_index = components[0].trim_prefix("occlusion_layer_").to_int();
		ERR_FAIL_COND_V(layer_index < 0, false);
		if (components[1] == "polygon") {
			EditorPropertyTilePolygon *ep = memnew(EditorPropertyTilePolygon);
			ep->setup_single_mode(p_path, "OccluderPolygon2D");
			add_property_editor(p_path, ep);
			return true;
		}
	} else if (components.size() >= 2 && components[0].begins_with("physics_layer_") && components[0].trim_prefix("physics_layer_").is_valid_int()) {
		
		int layer_index = components[0].trim_prefix("physics_layer_").to_int();
		ERR_FAIL_COND_V(layer_index < 0, false);
		if (components[1] == "polygons_count") {
			EditorPropertyTilePolygon *ep = memnew(EditorPropertyTilePolygon);