### Godot version

4.1 24cb43a

### System information

Windows 10 x64

### Issue description

Every time I launch Godot, I'm greeted with this in my console:
```
ERROR: Resource file not found: res://InputEventKey_7cuxk.
   at: (core\io\resource_loader.cpp:227)
```
Seems to be only happening in Project Manager and comes from this:
![](https://chat.godotengine.org/file-upload/udqZP8NQfogp4rjRL/Clipboard%20-%2021%20kwietnia%202023%2022:24)
It's part of my `editor_settings-4.tres`. I didn't test, but I think it applies to any shortcut that you customize. For some reason ResourceLoader tries to load it as a project resource, while it's a sub-resource.

Does not happen in 4.0.2.

### Steps to reproduce

1. Open Godot 4.1 project manager
2. Check the console

### Minimal reproduction project

N/A
RenderingServer::get_singleton()->sync();
	/
	rendering_server->global_shader_parameters_clear();
	if (xr_server) {
		/
		/
		xr_server->set_primary_interface(Ref<XRInterface>());
	}
#ifdef TOOLS_ENABLED
	GDExtensionManager::get_singleton()->deinitialize_extensions(GDExtension::INITIALIZATION_LEVEL_EDITOR);
	uninitialize_modules(MODULE_INITIALIZATION_LEVEL_EDITOR);
	unregister_editor_types();
#endif
	ImageLoader::cleanup();
	GDExtensionManager::get_singleton()->deinitialize_extensions(GDExtension::INITIALIZATION_LEVEL_SCENE);
	uninitialize_modules(MODULE_INITIALIZATION_LEVEL_SCENE);
	unregister_platform_apis();
	unregister_driver_types();
	unregister_scene_types();
	finalize_theme_db();
	/
	finalize_navigation_server();
	finalize_physics();
	GDExtensionManager::get_singleton()->deinitialize_extensions(GDExtension::INITIALIZATION_LEVEL_SERVERS);
	uninitialize_modules(MODULE_INITIALIZATION_LEVEL_SERVERS);
	unregister_server_types();
	EngineDebugger::deinitialize();
	if (xr_server) {
		memdelete(xr_server);
	}