### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (update_spinner_step >= 8) {
					update_spinner_step = 0;
				}
				update_spinner_step_msec = tick;
				update_spinner_step_frame = frame + 1;
				
				if (EDITOR_GET("interface/editor/show_update_spinner")) {
					update_spinner->set_icon(gui_base->get_theme_icon("Progress" + itos(update_spinner_step + 1), SNAME("EditorIcons")));
				}
			}
			editor_selection->update();
			ResourceImporterTexture::get_singleton()->update_imports();
			if (settings_changed) {
				_update_title();
			}
			if (settings_changed) {
				_update_from_settings();
				settings_changed = false;
				emit_signal(SNAME("project_settings_changed"));
			}
			ResourceImporterTexture::get_singleton()->update_imports();
			bottom_panel_updating = false;
		} break;
		case NOTIFICATION_ENTER_TREE: {
			get_tree()->set_disable_node_threading(true); 
			Engine::get_singleton()->set_editor_hint(true);
			Window *window = get_window();
			if (window) {
				
				window->connect("titlebar_changed", callable_mp(this, &EditorNode::_titlebar_resized));