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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

}
		String build_type = p_debug ? "Debug" : "Release";
		if (export_format == EXPORT_FORMAT_AAB) {
			String bundle_build_command = vformat("bundle%s", build_type);
			cmdline.push_back(bundle_build_command);
		} else if (export_format == EXPORT_FORMAT_APK) {
			String apk_build_command = vformat("assemble%s", build_type);
			cmdline.push_back(apk_build_command);
		}
		cmdline.push_back("-p"); 
		cmdline.push_back(build_path); 
		cmdline.push_back("-Pexport_package_name=" + package_name); 
		cmdline.push_back("-Pexport_version_code=" + version_code); 
		cmdline.push_back("-Pexport_version_name=" + version_name); 
		cmdline.push_back("-Pexport_version_min_sdk=" + min_sdk_version); 
		cmdline.push_back("-Pexport_version_target_sdk=" + target_sdk_version); 
		cmdline.push_back("-Pexport_enabled_abis=" + enabled_abi_string); 
		cmdline.push_back("-Pplugins_local_binaries=" + local_plugins_binaries); 
		cmdline.push_back("-Pplugins_remote_binaries=" + remote_plugins_binaries); 
		cmdline.push_back("-Pplugins_maven_repos=" + custom_maven_repos); 
		cmdline.push_back("-Pperform_zipalign=" + zipalign_flag); 
		cmdline.push_back("-Pperform_signing=" + sign_flag); 
		cmdline.push_back("-Pgodot_editor_version=" + String(VERSION_FULL_CONFIG));
		
		
		
		
		print_verbose("Build Android project using gradle command: " + String("\n") + build_command + " " + join_list(cmdline, String(" ")));
		if (should_sign) {
			if (p_debug) {