### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
project_run_bar->stop_child_process(p_pid);
}
Ref<Script> EditorNode::get_object_custom_type_base(const Object *p_object) const {
	ERR_FAIL_COND_V(!p_object, nullptr);
	Ref<Script> scr = p_object->get_script();
	if (scr.is_valid()) {
		
		
		
		
		
		
		StringName base = scr->get_instance_base_type();
		if (base != StringName() && EditorNode::get_editor_data().get_custom_types().has(base)) {
			const Vector<EditorData::CustomType> &types = EditorNode::get_editor_data().get_custom_types()[base];
			Ref<Script> base_scr = scr;
			while (base_scr.is_valid()) {
				for (int i = 0; i < types.size(); ++i) {
					if (types[i].script == base_scr) {
						return types[i].script;
					}
				}
				base_scr = base_scr->get_base_script();
			}
		}
	}
	return nullptr;
}
StringName EditorNode::get_object_custom_type_name(const Object *p_object) const {