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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

min_sdk_int = min_sdk_str.to_int();
		}
	}
	String target_sdk_str = p_preset->get("gradle_build/target_sdk");
	int target_sdk_int = DEFAULT_TARGET_SDK_VERSION;
	if (!target_sdk_str.is_empty()) { 
		if (target_sdk_str.is_valid_int()) {
			target_sdk_int = target_sdk_str.to_int();
			if (target_sdk_int > DEFAULT_TARGET_SDK_VERSION) {
				
				err += vformat(TTR("\"Target SDK\" %d is higher than the default version %d. This may work, but wasn't tested and may be unstable."), target_sdk_int, DEFAULT_TARGET_SDK_VERSION);
				err += "\n";
			}
		}
	}
	String current_renderer = GLOBAL_GET("rendering/renderer/rendering_method.mobile");
	if (current_renderer == "forward_plus") {
		
		err += vformat(TTR("The \"%s\" renderer is designed for Desktop devices, and is not suitable for Android devices."), current_renderer);
		err += "\n";
	}
	if (_uses_vulkan() && min_sdk_int < VULKAN_MIN_SDK_VERSION) {
		
		err += vformat(TTR("\"Min SDK\" should be greater or equal to %d for the \"%s\" renderer."), VULKAN_MIN_SDK_VERSION, current_renderer);
		err += "\n";
	}
	r_error = err;
	return valid;
}
List<String> EditorExportPlatformAndroid::get_binary_extensions(const Ref<EditorExportPreset> &p_preset) const {