### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
cell.set_atlas_coords(coords);
				cell.alternative_tile = alternative_tile;
				current_tile_data_editor->draw_over_tile(alternative_tiles_control_unscaled, xform, cell);
			}
		}
		
		if (tools_button_group->get_pressed_button() == tool_select_button) {
			for (const TileSelection &E : selection) {
				if (E.alternative == 0) {
					continue;
				}
				Rect2i rect = tile_atlas_view->get_alternative_tile_rect(E.tile, E.alternative);
				Vector2 position = rect.get_center() + tile_set_atlas_source->get_tile_data(E.tile, E.alternative)->get_texture_origin();
				Transform2D xform = alternative_tiles_control->get_parent_control()->get_transform();
				xform.translate_local(position);
				TileMapCell cell;
				cell.source_id = tile_set_atlas_source_id;
				cell.set_atlas_coords(E.tile);
				cell.alternative_tile = E.alternative;
				current_tile_data_editor->draw_over_tile(alternative_tiles_control_unscaled, xform, cell, true);
			}
		}
		
		if (tools_button_group->get_pressed_button() == tool_paint_button) {
			Transform2D xform = tile_atlas_control->get_parent_control()->get_transform();
			current_tile_data_editor->forward_draw_over_alternatives(tile_atlas_view, tile_set_atlas_source, alternative_tiles_control_unscaled, xform);
		}
	}
}
void TileSetAtlasSourceEditor::_tile_set_changed() {