### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
List<String> property_names;
						for (const PropertyInfo &E2 : pinfo) {
							if (E2.usage & PROPERTY_USAGE_STORAGE) {
								property_names.push_back(E2.name);
							}
						}
						
						for (const KeyValue<StringName, Variant> &E2 : E.value.property_table) {
							if (property_names.find(E2.key)) {
								modifiable_node->set(E2.key, E2.value);
							}
						}
						
						for (const ConnectionWithNodePath &E2 : E.value.connections_to) {
							Connection conn = E2.connection;
							
							Node *target_node = cast_to<Node>(conn.callable.get_object());
							
							
							
							if (!target_node || !target_node->is_queued_for_deletion()) {
								target_node = modifiable_node->get_node_or_null(E2.node_path);
							}
							if (target_node) {
								
								Callable new_callable = Callable(target_node, conn.callable.get_method());
								if (!modifiable_node->is_connected(conn.signal.get_name(), new_callable)) {
									ERR_FAIL_COND(modifiable_node->connect(conn.signal.get_name(), new_callable, conn.flags) != OK);
								}
							}