### Godot version

4.1.beta (7b1387ff2)

### System information

Mageia 9, Linux

### Issue description

When opening an empty project in latest `master`, I get these errors:
```
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: get_scene_path (editor/scu/../editor_data.cpp:880)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: check_and_update_scene (editor/scu/../editor_data.cpp:683)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: set_edited_scene (editor/scu/../editor_data.cpp:745)
```

Possibly related to recent changes to restore past sessions, but there's nothing to restore in this case?

### Steps to reproduce

- Create a new project, edit it
- Quit to project manager
- Re-open the newly created project -> errors

### Minimal reproduction project

Empty project.
vbc->add_child(disk_changed_list);
		disk_changed_list->set_v_size_flags(Control::SIZE_EXPAND_FILL);
		disk_changed->connect("confirmed", callable_mp(this, &EditorNode::_reload_modified_scenes));
		disk_changed->connect("confirmed", callable_mp(this, &EditorNode::_reload_project_settings));
		disk_changed->set_ok_button_text(TTR("Reload"));
		disk_changed->add_button(TTR("Resave"), !DisplayServer::get_singleton()->get_swap_cancel_ok(), "resave");
		disk_changed->connect("custom_action", callable_mp(this, &EditorNode::_resave_scenes));
	}
	gui_base->add_child(disk_changed);
	add_editor_plugin(memnew(AnimationPlayerEditorPlugin));
	add_editor_plugin(memnew(AnimationTrackKeyEditEditorPlugin));
	add_editor_plugin(memnew(CanvasItemEditorPlugin));
	add_editor_plugin(memnew(Node3DEditorPlugin));
	add_editor_plugin(memnew(ScriptEditorPlugin));
	EditorAudioBuses *audio_bus_editor = EditorAudioBuses::register_editor();
	ScriptTextEditor::register_editor(); 
	TextEditor::register_editor();
	if (AssetLibraryEditorPlugin::is_available()) {
		add_editor_plugin(memnew(AssetLibraryEditorPlugin));
	} else {
		print_verbose("Asset Library not available (due to using Web editor, or SSL support disabled).");
	}
	
	raise_bottom_panel_item(AnimationPlayerEditor::get_singleton());
	add_editor_plugin(VersionControlEditorPlugin::get_singleton());
	vcs_actions_menu = VersionControlEditorPlugin::get_singleton()->get_version_control_actions_panel();
	vcs_actions_menu->set_name("Version Control");
	vcs_actions_menu->connect("index_pressed", callable_mp(this, &EditorNode::_version_control_menu_option));
	vcs_actions_menu->add_item(TTR("Create Version Control Metadata"), RUN_VCS_METADATA);
	vcs_actions_menu->add_item(TTR("Version Control Settings"), RUN_VCS_SETTINGS);