### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
file_export_lib->get_vbox()->add_child(file_export_lib_apply_xforms);
	gui_base->add_child(file_export_lib);
	file_script = memnew(EditorFileDialog);
	file_script->set_title(TTR("Open & Run a Script"));
	file_script->set_access(EditorFileDialog::ACCESS_FILESYSTEM);
	file_script->set_file_mode(EditorFileDialog::FILE_MODE_OPEN_FILE);
	List<String> sexts;
	ResourceLoader::get_recognized_extensions_for_type("Script", &sexts);
	for (const String &E : sexts) {
		file_script->add_filter("*." + E);
	}
	gui_base->add_child(file_script);
	file_script->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	file_menu->connect("id_pressed", callable_mp(this, &EditorNode::_menu_option));
	file_menu->connect("about_to_popup", callable_mp(this, &EditorNode::_update_file_menu_opened));
	file_menu->connect("popup_hide", callable_mp(this, &EditorNode::_update_file_menu_closed));
	settings_menu->connect("id_pressed", callable_mp(this, &EditorNode::_menu_option));
	file->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	file_templates->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	audio_preview_gen = memnew(AudioStreamPreviewGenerator);
	add_child(audio_preview_gen);
	add_editor_plugin(memnew(DebuggerEditorPlugin(debug_menu)));
	disk_changed = memnew(ConfirmationDialog);
	{
		VBoxContainer *vbc = memnew(VBoxContainer);
		disk_changed->add_child(vbc);
		Label *dl = memnew(Label);
		dl->set_text(TTR("The following files are newer on disk.\nWhat action should be taken?"));
		vbc->add_child(dl);
		disk_changed_list = memnew(Tree);