### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
editable_info = TTR("This resource belongs to a scene that was instantiated or inherited.\nChanges to it must be made inside the original scene.");
					}
				}
			} else {
				if (FileAccess::exists(base_path + ".import")) {
					editable_info = TTR("This resource belongs to a scene that was imported, so it's not editable.\nPlease read the documentation relevant to importing scenes to better understand this workflow.");
				}
			}
		} else if (current_res->get_path().is_resource_file()) {
			if (FileAccess::exists(current_res->get_path() + ".import")) {
				editable_info = TTR("This resource was imported, so it's not editable. Change its settings in the import panel and then re-import.");
			}
		}
	} else if (is_node) {
		Node *current_node = Object::cast_to<Node>(current_obj);
		ERR_FAIL_COND(!current_node);
		InspectorDock::get_inspector_singleton()->edit(current_node);
		if (current_node->is_inside_tree()) {
			NodeDock::get_singleton()->set_node(current_node);
			SceneTreeDock::get_singleton()->set_selected(current_node);
			InspectorDock::get_singleton()->update(current_node);
			if (!inspector_only && !skip_main_plugin) {
				skip_main_plugin = stay_in_script_editor_on_node_selected && ScriptEditor::get_singleton()->is_visible_in_tree();
			}
		} else {
			NodeDock::get_singleton()->set_node(nullptr);
			SceneTreeDock::get_singleton()->set_selected(nullptr);
			InspectorDock::get_singleton()->update(nullptr);
		}
		if (get_edited_scene() && !get_edited_scene()->get_scene_file_path().is_empty()) {