### Godot version

4.1.1-stable

### System information

Windows 10

### Issue description

When the project loads in editor, all the settings defined in project settings will be loaded over the default values, but when running the game nearly 95% of them will be ignored resulting in just loading the default settings.

here it's just loading only 4 variables from project setting and i have added the fifth in this pull request https://github.com/godotengine/godot/pull/80151
![image](https://github.com/godotengine/godot/assets/53877170/926168a6-e6d3-4983-b59d-7fd202db681d)

instance_uses_custom_data = mesh_storage->multimesh_uses_custom_data(multimesh);
				use_instancing = true;
			} else if (state.canvas_instance_batches[p_index].command_type == Item::Command::TYPE_PARTICLES) {
				const Item::CommandParticles *pt = static_cast<const Item::CommandParticles *>(state.canvas_instance_batches[p_index].command);
				RID particles = pt->particles;
				mesh = particles_storage->particles_get_draw_pass_mesh(particles, 0);
				ERR_BREAK(particles_storage->particles_get_mode(particles) != RS::PARTICLES_MODE_2D);
				particles_storage->particles_request_process(particles);
				if (particles_storage->particles_is_inactive(particles)) {
					break;
				}
				RenderingServerDefault::redraw_request(); 
				int dpc = particles_storage->particles_get_draw_passes(particles);
				if (dpc == 0) {
					break; 
				}
				instance_count = particles_storage->particles_get_amount(particles);
				instance_buffer = particles_storage->particles_get_gl_buffer(particles);
				instance_stride = 12; 
				instance_color_offset = 8; 
				instance_uses_color = true;
				instance_uses_custom_data = true;
				use_instancing = true;
			}
			ERR_FAIL_COND(mesh.is_null());
			uint32_t surf_count = mesh_storage->mesh_get_surface_count(mesh);
			for (uint32_t j = 0; j < surf_count; j++) {
				void *surface = mesh_storage->mesh_get_surface(mesh, j);
				RS::PrimitiveType primitive = mesh_storage->mesh_surface_get_primitive(surface);
				ERR_CONTINUE(primitive < 0 || primitive >= RS::PRIMITIVE_MAX);