### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
tile_data_painting_editor_container = memnew(VBoxContainer);
	tile_data_painting_editor_container->set_h_size_flags(SIZE_EXPAND_FILL);
	tile_data_editors_vbox->add_child(tile_data_painting_editor_container);
	
	atlas_source_proxy_object = memnew(TileSetAtlasSourceProxyObject());
	atlas_source_proxy_object->connect("changed", callable_mp(this, &TileSetAtlasSourceEditor::_atlas_source_proxy_object_changed));
	atlas_source_inspector = memnew(EditorInspector);
	atlas_source_inspector->set_v_size_flags(SIZE_EXPAND_FILL);
	atlas_source_inspector->set_show_categories(true);
	atlas_source_inspector->edit(atlas_source_proxy_object);
	middle_vbox_container->add_child(atlas_source_inspector);
	
	VBoxContainer *right_vbox_container = memnew(VBoxContainer);
	add_child(right_vbox_container);
	
	tool_settings = memnew(HBoxContainer);
	right_vbox_container->add_child(tool_settings);
	tool_settings_tile_data_toolbar_container = memnew(HBoxContainer);
	tool_settings->add_child(tool_settings_tile_data_toolbar_container);
	tools_settings_erase_button = memnew(Button);
	tools_settings_erase_button->set_flat(true);
	tools_settings_erase_button->set_toggle_mode(true);
	tools_settings_erase_button->set_shortcut(ED_SHORTCUT("tiles_editor/eraser", TTR("Eraser"), Key::E));
	tools_settings_erase_button->set_shortcut_context(this);
	tool_settings->add_child(tools_settings_erase_button);
	tool_advanced_menu_button = memnew(MenuButton);
	tool_advanced_menu_button->set_flat(true);
	tool_advanced_menu_button->get_popup()->add_item(TTR("Create Tiles in Non-Transparent Texture Regions"), ADVANCED_AUTO_CREATE_TILES);
	tool_advanced_menu_button->get_popup()->add_item(TTR("Remove Tiles in Fully Transparent Texture Regions"), ADVANCED_AUTO_REMOVE_TILES);
	tool_advanced_menu_button->get_popup()->connect("id_pressed", callable_mp(this, &TileSetAtlasSourceEditor::_menu_option));