### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

Transform3D object_transform = p_object->get_global_transform();
	Transform3D camera_transform = p_camera->get_global_transform();
	ObjectID id = p_object->get_instance_id();
	
	if (object_transform == physics_last_object_transform && camera_transform == physics_last_camera_transform && physics_last_id == id) {
		Ref<InputEventMouseMotion> mm = p_input_event;
		if (mm.is_valid() && mm->get_device() == InputEvent::DEVICE_ID_INTERNAL) {
			return; 
		}
	}
	p_object->_input_event_call(camera_3d, p_input_event, p_pos, p_normal, p_shape);
	physics_last_object_transform = object_transform;
	physics_last_camera_transform = camera_transform;
	physics_last_id = id;
}
Camera3D *Viewport::get_camera_3d() const {