### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
gdextension_export_plugin.instantiate();
	EditorExport::get_singleton()->add_export_plugin(gdextension_export_plugin);
	Ref<DedicatedServerExportPlugin> dedicated_server_export_plugin;
	dedicated_server_export_plugin.instantiate();
	EditorExport::get_singleton()->add_export_plugin(dedicated_server_export_plugin);
	Ref<PackedSceneEditorTranslationParserPlugin> packed_scene_translation_parser_plugin;
	packed_scene_translation_parser_plugin.instantiate();
	EditorTranslationParser::get_singleton()->add_parser(packed_scene_translation_parser_plugin, EditorTranslationParser::STANDARD);
	_edit_current();
	current = nullptr;
	saving_resource = Ref<Resource>();
	set_process(true);
	open_imported = memnew(ConfirmationDialog);
	open_imported->set_ok_button_text(TTR("Open Anyway"));
	new_inherited_button = open_imported->add_button(TTR("New Inherited"), !DisplayServer::get_singleton()->get_swap_cancel_ok(), "inherit");
	open_imported->connect("confirmed", callable_mp(this, &EditorNode::_open_imported));
	open_imported->connect("custom_action", callable_mp(this, &EditorNode::_inherit_imported));
	gui_base->add_child(open_imported);
	quick_open = memnew(EditorQuickOpen);
	gui_base->add_child(quick_open);
	quick_open->connect("quick_open", callable_mp(this, &EditorNode::_quick_opened));
	_update_recent_scenes();
	set_process_shortcut_input(true);
	load_errors = memnew(RichTextLabel);
	load_error_dialog = memnew(AcceptDialog);
	load_error_dialog->set_unparent_when_invisible(true);
	load_error_dialog->add_child(load_errors);
	load_error_dialog->set_title(TTR("Load Errors"));
	execute_outputs = memnew(RichTextLabel);
	execute_outputs->set_selection_enabled(true);