### Godot version

4.1.stable

### System information

Godot v4.1.stable - Windows 10.0.19045 - Vulkan (Compatibility) - Intel(R) HD Graphics 4600 (Intel Corporation; 20.19.15.5126) - Intel(R) Core(TM) i3-4330 CPU @ 3.50GHz (4 Threads)

### Issue description

When I try to join 68 images of 128x128 resolution in an atlas it returns a transparent 1x1 image

I tried using few images and it doesn't work either

It doesn't work either with 16x16, 32x32, 64x64 resolutions

- Google Translate :)

### Steps to reproduce


https://github.com/godotengine/godot/assets/136469511/ca5f64c2-f0c5-486f-a13e-b941ae2dea7d



### Minimal reproduction project

N/A
if (per_tile.has(coords)) {
					for (List<const PropertyInfo *>::Element *E_property = per_tile[coords].front(); E_property; E_property = E_property->next()) {
						String property = E_property->get()->name;
						Variant value = tile_set_atlas_source->get(property);
						if (value.get_type() != Variant::NIL) {
							undo_redo->add_undo_method(tile_set_atlas_source, "set", E_property->get()->name, value);
						}
					}
				}
			}
			undo_redo->commit_action();
		} break;
		case DRAG_TYPE_CREATE_TILES_USING_RECT: {
			Vector2i start_base_tiles_coords = tile_atlas_view->get_atlas_tile_coords_at_pos(drag_start_mouse_pos, true);
			Vector2i new_base_tiles_coords = tile_atlas_view->get_atlas_tile_coords_at_pos(tile_atlas_control->get_local_mouse_position(), true);
			Rect2i area = Rect2i(start_base_tiles_coords, new_base_tiles_coords - start_base_tiles_coords).abs();
			area.set_end((area.get_end() + Vector2i(1, 1)).min(tile_set_atlas_source->get_atlas_grid_size()));
			undo_redo->create_action(TTR("Create tiles"));
			for (int x = area.get_position().x; x < area.get_end().x; x++) {
				for (int y = area.get_position().y; y < area.get_end().y; y++) {
					Vector2i coords = Vector2i(x, y);
					if (tile_set_atlas_source->get_tile_at_coords(coords) == TileSetSource::INVALID_ATLAS_COORDS) {
						undo_redo->add_do_method(tile_set_atlas_source, "create_tile", coords);
						undo_redo->add_undo_method(tile_set_atlas_source, "remove_tile", coords);
					}
				}
			}
			undo_redo->commit_action();
		} break;
		case DRAG_TYPE_REMOVE_TILES_USING_RECT: {