### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
return scene_tabs->get_current_tab();
}
void EditorNode::set_current_tab(int p_tab) {
	scene_tabs->set_current_tab(p_tab);
}
void EditorNode::_update_layouts_menu() {
	editor_layouts->clear();
	overridden_default_layout = -1;
	editor_layouts->reset_size();
	editor_layouts->add_shortcut(ED_SHORTCUT("layout/save", TTR("Save Layout")), SETTINGS_LAYOUT_SAVE);
	editor_layouts->add_shortcut(ED_SHORTCUT("layout/delete", TTR("Delete Layout")), SETTINGS_LAYOUT_DELETE);
	editor_layouts->add_separator();
	editor_layouts->add_shortcut(ED_SHORTCUT("layout/default", TTR("Default")), SETTINGS_LAYOUT_DEFAULT);
	Ref<ConfigFile> config;
	config.instantiate();
	Error err = config->load(EditorSettings::get_singleton()->get_editor_layouts_config());
	if (err != OK) {
		return; 
	}
	List<String> layouts;
	config.ptr()->get_sections(&layouts);
	for (const String &layout : layouts) {
		if (layout == TTR("Default")) {
			editor_layouts->remove_item(editor_layouts->get_item_index(SETTINGS_LAYOUT_DEFAULT));
			overridden_default_layout = editor_layouts->get_item_count();
		}
		editor_layouts->add_item(layout);
	}
}
void EditorNode::_layout_menu_option(int p_id) {