### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ClassDB::bind_method(D_METHOD("_set_selection_from_array"), &TileSetAtlasSourceEditor::_set_selection_from_array);
	ADD_SIGNAL(MethodInfo("source_id_changed", PropertyInfo(Variant::INT, "source_id")));
}
TileSetAtlasSourceEditor::TileSetAtlasSourceEditor() {
	set_shortcut_context(this);
	set_process_shortcut_input(true);
	set_process_internal(true);
	
	VBoxContainer *middle_vbox_container = memnew(VBoxContainer);
	middle_vbox_container->set_custom_minimum_size(Size2(200, 0) * EDSCALE);
	add_child(middle_vbox_container);
	
	tools_button_group.instantiate();
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_fix_selected_and_hovered_tiles).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_tile_id_label).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_atlas_source_inspector).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_tile_inspector).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_tile_data_editors).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_current_tile_data_editor).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_atlas_view).unbind(1));
	tools_button_group->connect("pressed", callable_mp(this, &TileSetAtlasSourceEditor::_update_toolbar).unbind(1));
	HBoxContainer *toolbox = memnew(HBoxContainer);
	middle_vbox_container->add_child(toolbox);
	tool_setup_atlas_source_button = memnew(Button);
	tool_setup_atlas_source_button->set_text(TTR("Setup"));
	tool_setup_atlas_source_button->set_flat(true);
	tool_setup_atlas_source_button->set_toggle_mode(true);