### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Vector2i coords = tile_set_atlas_source->get_tile_at_coords(start_base_tiles_coords);
				if (coords != TileSetSource::INVALID_ATLAS_COORDS) {
					if (selection.has({ coords, 0 })) {
						add_to_selection = false;
					}
				}
			} else {
				selection.clear();
			}
			
			for (int x = region.position.x; x < region.get_end().x; x++) {
				for (int y = region.position.y; y < region.get_end().y; y++) {
					Vector2i coords = Vector2i(x, y);
					coords = tile_set_atlas_source->get_tile_at_coords(coords);
					if (coords != TileSetSource::INVALID_ATLAS_COORDS) {
						if (add_to_selection && !selection.has({ coords, 0 })) {
							selection.insert({ coords, 0 });
						} else if (!add_to_selection && selection.has({ coords, 0 })) {
							selection.erase({ coords, 0 });
						}
					}
				}
			}
			_update_tile_inspector();
			_update_tile_id_label();
			_update_current_tile_data_editor();
			undo_redo->add_do_method(this, "_set_selection_from_array", _get_selection_as_array());
			undo_redo->commit_action(false);
		} break;
		case DRAG_TYPE_MAY_POPUP_MENU: {