### Godot version

Godot 4.1-beta2

### System information

Manjaro Gnome, Intel Core i7-11800H

### Issue description

On a relatively modern laptop (Intel Core i7-11800H), in a scene with many scripted nodes (total of 900+ with roughly half of them scripted), adding or duplicating a node freezes the editor for several seconds. Godot 4.0.2 handles such scenes much better!

Here is a flame graph captured while repeatedly duplicating simple Marker2D nodes with Ctrl+D in a complicated scene:
![Screenshot from 2023-06-15 23-54-38](https://github.com/godotengine/godot/assets/2766569/d0019f17-9b82-4a26-9b47-71fa7a3bef3a)

Performance data file to use with hotspot v1.4.1 (relevant data starts at the 75-second mark and lasts about 20+ seconds):
[perf.data.perfparser.zip](https://github.com/godotengine/godot/files/11763700/perf.data.perfparser.zip)



### Steps to reproduce

1) Add 1000 nodes with a script attached.
2) Duplicate a node and witness lags.

Also affects scrolling the scene tree dock.

### Minimal reproduction project

[add_node_lags_repro.zip](https://github.com/godotengine/godot/files/11763731/add_node_lags_repro.zip)

show_accept(
							vformat(TTR("The current scene has no root node, but %d modified external resource(s) were saved anyway."), saved),
							TTR("OK"));
				} else if (p_option == FILE_SAVE_AS_SCENE) {
					
					show_accept(
							TTR("A root node is required to save the scene. You can add a root node using the Scene tree dock."),
							TTR("OK"));
				}
				break;
			}
			file->set_file_mode(EditorFileDialog::FILE_MODE_SAVE_FILE);
			List<String> extensions;
			Ref<PackedScene> sd = memnew(PackedScene);
			ResourceSaver::get_recognized_extensions(sd, &extensions);
			file->clear_filters();
			for (int i = 0; i < extensions.size(); i++) {
				file->add_filter("*." + extensions[i], extensions[i].to_upper());
			}
			if (!scene->get_scene_file_path().is_empty()) {
				String path = scene->get_scene_file_path();
				file->set_current_path(path);
				if (extensions.size()) {
					String ext = path.get_extension().to_lower();
					if (extensions.find(ext) == nullptr) {
						file->set_current_path(path.replacen("." + ext, "." + extensions.front()->get()));
					}
				}
			} else if (extensions.size()) {
				String root_name = scene->get_name();