### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
default_layout->set_value(docks_section, "dock_3", "Scene,Import");
	default_layout->set_value(docks_section, "dock_4", "FileSystem");
	default_layout->set_value(docks_section, "dock_5", "Inspector,Node,History");
	for (int i = 0; i < vsplits.size(); i++) {
		default_layout->set_value(docks_section, "dock_split_" + itos(i + 1), 0);
	}
	default_layout->set_value(docks_section, "dock_hsplit_1", 0);
	default_layout->set_value(docks_section, "dock_hsplit_2", 270 * EDSCALE);
	default_layout->set_value(docks_section, "dock_hsplit_3", -270 * EDSCALE);
	default_layout->set_value(docks_section, "dock_hsplit_4", 0);
	_update_layouts_menu();
	
	bottom_panel = memnew(PanelContainer);
	bottom_panel->add_theme_style_override("panel", gui_base->get_theme_stylebox(SNAME("BottomPanel"), SNAME("EditorStyles")));
	center_split->add_child(bottom_panel);
	center_split->set_dragger_visibility(SplitContainer::DRAGGER_HIDDEN);
	bottom_panel_vb = memnew(VBoxContainer);
	bottom_panel->add_child(bottom_panel_vb);
	bottom_panel_hb = memnew(HBoxContainer);
	bottom_panel_hb->set_custom_minimum_size(Size2(0, 24 * EDSCALE)); 
	bottom_panel_vb->add_child(bottom_panel_hb);
	bottom_panel_hb_editors = memnew(HBoxContainer);
	bottom_panel_hb_editors->set_h_size_flags(Control::SIZE_EXPAND_FILL);
	bottom_panel_hb->add_child(bottom_panel_hb_editors);
	editor_toaster = memnew(EditorToaster);
	bottom_panel_hb->add_child(editor_toaster);
	VBoxContainer *version_info_vbc = memnew(VBoxContainer);
	bottom_panel_hb->add_child(version_info_vbc);