### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
EditorSettings::get_singleton()->add_property_hint(PropertyInfo(Variant::INT, "interface/inspector/default_color_picker_mode", PROPERTY_HINT_ENUM, "RGB,HSV,RAW,OKHSL", PROPERTY_USAGE_DEFAULT));
	EDITOR_DEF("interface/inspector/default_color_picker_shape", (int32_t)ColorPicker::SHAPE_OKHSL_CIRCLE);
	EditorSettings::get_singleton()->add_property_hint(PropertyInfo(Variant::INT, "interface/inspector/default_color_picker_shape", PROPERTY_HINT_ENUM, "HSV Rectangle,HSV Rectangle Wheel,VHS Circle,OKHSL Circle", PROPERTY_USAGE_DEFAULT));
	ED_SHORTCUT("canvas_item_editor/pan_view", TTR("Pan View"), Key::SPACE);
	const Vector<String> textfile_ext = ((String)(EDITOR_GET("docks/filesystem/textfile_extensions"))).split(",", false);
	for (const String &E : textfile_ext) {
		textfile_extensions.insert(E);
	}
	theme_base = memnew(Control);
	add_child(theme_base);
	theme_base->set_anchors_and_offsets_preset(Control::PRESET_FULL_RECT);
	gui_base = memnew(Panel);
	theme_base->add_child(gui_base);
	gui_base->set_anchors_and_offsets_preset(Control::PRESET_FULL_RECT);
	theme_base->set_theme(theme);
	gui_base->set_theme(theme);
	gui_base->add_theme_style_override("panel", gui_base->get_theme_stylebox(SNAME("Background"), SNAME("EditorStyles")));
	resource_preview = memnew(EditorResourcePreview);
	add_child(resource_preview);
	progress_dialog = memnew(ProgressDialog);
	progress_dialog->set_unparent_when_invisible(true);
	
	gui_base->set_anchor(SIDE_RIGHT, Control::ANCHOR_END);
	gui_base->set_anchor(SIDE_BOTTOM, Control::ANCHOR_END);
	gui_base->set_end(Point2(0, 0));
	main_vbox = memnew(VBoxContainer);
	gui_base->add_child(main_vbox);
	main_vbox->set_anchors_and_offsets_preset(Control::PRESET_FULL_RECT, Control::PRESET_MODE_MINSIZE, gui_base->get_theme_constant(SNAME("window_border_margin"), SNAME("Editor")));
	main_vbox->add_theme_constant_override("separation", gui_base->get_theme_constant(SNAME("top_bar_separation"), SNAME("Editor")));
	title_bar = memnew(EditorTitleBar);