### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
if (navigation_polygon.is_valid()) {
				for (int i = 0; i < navigation_polygon->get_outline_count(); i++) {
					generic_tile_polygon_editor->add_polygon(navigation_polygon->get_outline(i));
				}
			}
		}
	} else {
		int count = get_edited_object()->get(count_property);
		if (base_type.is_empty()) {
			
			generic_tile_polygon_editor->clear_polygons();
			for (int i = 0; i < count; i++) {
				generic_tile_polygon_editor->add_polygon(get_edited_object()->get(vformat(element_pattern, i)));
			}
		}
	}
}
void EditorPropertyTilePolygon::setup_single_mode(const StringName &p_property, const String &p_base_type) {
	set_object_and_property(nullptr, p_property);
	base_type = p_base_type;
	generic_tile_polygon_editor->set_multiple_polygon_mode(false);
}
void EditorPropertyTilePolygon::setup_multiple_mode(const StringName &p_property, const StringName &p_count_property, const String &p_element_pattern, const String &p_base_type) {
	set_object_and_property(nullptr, p_property);
	count_property = p_count_property;
	element_pattern = p_element_pattern;
	base_type = p_base_type;
	generic_tile_polygon_editor->set_multiple_polygon_mode(true);
}
EditorPropertyTilePolygon::EditorPropertyTilePolygon() {