### Godot version

Godot 4.1-beta2

### System information

Manjaro Gnome, Intel Core i7-11800H

### Issue description

On a relatively modern laptop (Intel Core i7-11800H), in a scene with many scripted nodes (total of 900+ with roughly half of them scripted), adding or duplicating a node freezes the editor for several seconds. Godot 4.0.2 handles such scenes much better!

Here is a flame graph captured while repeatedly duplicating simple Marker2D nodes with Ctrl+D in a complicated scene:
![Screenshot from 2023-06-15 23-54-38](https://github.com/godotengine/godot/assets/2766569/d0019f17-9b82-4a26-9b47-71fa7a3bef3a)

Performance data file to use with hotspot v1.4.1 (relevant data starts at the 75-second mark and lasts about 20+ seconds):
[perf.data.perfparser.zip](https://github.com/godotengine/godot/files/11763700/perf.data.perfparser.zip)



### Steps to reproduce

1) Add 1000 nodes with a script attached.
2) Duplicate a node and witness lags.

Also affects scrolling the scene tree dock.

### Minimal reproduction project

[add_node_lags_repro.zip](https://github.com/godotengine/godot/files/11763731/add_node_lags_repro.zip)

}
						save_confirmation->reset_size();
						save_confirmation->popup_centered();
						break;
					}
					_discard_changes();
					break;
				}
				if (save_each) {
					tab_closing_menu_option = current_menu_option;
					for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
						tabs_to_close.push_back(editor_data.get_scene_path(i));
					}
					_proceed_closing_scene_tabs();
				} else {
					String unsaved_scenes;
					int i = _next_unsaved_scene(true, 0);
					while (i != -1) {
						unsaved_scenes += "\n            " + editor_data.get_edited_scene_root(i)->get_scene_file_path();
						i = _next_unsaved_scene(true, ++i);
					}
					if (p_option == RELOAD_CURRENT_PROJECT) {
						save_confirmation->set_ok_button_text(TTR("Save & Reload"));
						save_confirmation->set_text(TTR("Save changes to the following scene(s) before reloading?") + unsaved_scenes);
					} else {
						save_confirmation->set_ok_button_text(TTR("Save & Quit"));
						save_confirmation->set_text((p_option == FILE_QUIT ? TTR("Save changes to the following scene(s) before quitting?") : TTR("Save changes to the following scene(s) before opening Project Manager?")) + unsaved_scenes);
					}
					save_confirmation->reset_size();
					save_confirmation->popup_centered();