### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
project_menu->add_child(vcs_actions_menu);
	project_menu->set_item_submenu(project_menu->get_item_index(VCS_MENU), "Version Control");
	add_editor_plugin(memnew(AudioBusesEditorPlugin(audio_bus_editor)));
	for (int i = 0; i < EditorPlugins::get_plugin_count(); i++) {
		add_editor_plugin(EditorPlugins::create(i));
	}
	for (const StringName &extension_class_name : GDExtensionEditorPlugins::get_extension_classes()) {
		add_extension_editor_plugin(extension_class_name);
	}
	GDExtensionEditorPlugins::editor_node_add_plugin = &EditorNode::add_extension_editor_plugin;
	GDExtensionEditorPlugins::editor_node_remove_plugin = &EditorNode::remove_extension_editor_plugin;
	for (int i = 0; i < plugin_init_callback_count; i++) {
		plugin_init_callbacks[i]();
	}
	resource_preview->add_preview_generator(Ref<EditorTexturePreviewPlugin>(memnew(EditorTexturePreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorImagePreviewPlugin>(memnew(EditorImagePreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorPackedScenePreviewPlugin>(memnew(EditorPackedScenePreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorMaterialPreviewPlugin>(memnew(EditorMaterialPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorScriptPreviewPlugin>(memnew(EditorScriptPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorAudioStreamPreviewPlugin>(memnew(EditorAudioStreamPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorMeshPreviewPlugin>(memnew(EditorMeshPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorBitmapPreviewPlugin>(memnew(EditorBitmapPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorFontPreviewPlugin>(memnew(EditorFontPreviewPlugin)));
	resource_preview->add_preview_generator(Ref<EditorGradientPreviewPlugin>(memnew(EditorGradientPreviewPlugin)));
	{
		Ref<StandardMaterial3DConversionPlugin> spatial_mat_convert;
		spatial_mat_convert.instantiate();
		resource_conversion_plugins.push_back(spatial_mat_convert);
		Ref<ORMMaterial3DConversionPlugin> orm_mat_convert;
		orm_mat_convert.instantiate();