### Godot version

4.2 6da4ad1

### System information

Windows 10.0.19045 - Vulkan (Forward+) - dedicated NVIDIA GeForce GTX 1060 (NVIDIA; 30.0.15.1403) - Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz (8 Threads)

### Issue description

![image](https://github.com/godotengine/godot/assets/2223172/d65ab202-93dd-4d83-bcef-c2b34bfa23f3)

In 4.2 dev3:
![image](https://github.com/godotengine/godot/assets/2223172/8621ec24-65d4-490d-bfc1-7e6e8aa3606a)


### Steps to reproduce

1. Create a scene with some children
2. Instantiate it in another scene
3. Enable editable children

### Minimal reproduction project

N/A
void _update_selection(TreeItem *item);
	void _node_script_changed(Node *p_node);
	void _node_visibility_changed(Node *p_node);
	void _update_visibility_color(Node *p_node, TreeItem *p_item);
	void _selection_changed();
	Node *get_scene_node();
	Variant get_drag_data_fw(const Point2 &p_point, Control *p_from);
	bool can_drop_data_fw(const Point2 &p_point, const Variant &p_data, Control *p_from) const;
	void drop_data_fw(const Point2 &p_point, const Variant &p_data, Control *p_from);
	void _empty_clicked(const Vector2 &p_pos, MouseButton p_button);
	void _rmb_select(const Vector2 &p_pos, MouseButton p_button = MouseButton::RIGHT);
	void _warning_changed(Node *p_for_node);
	Timer *update_timer = nullptr;
	List<StringName> *script_types;
	bool _is_script_type(const StringName &p_type) const;
	Vector<StringName> valid_types;
public:
	
	void _update_tree(bool p_scroll_to_selected = false);
	void set_filter(const String &p_filter);
	String get_filter() const;
	String get_filter_term_warning();
	void set_show_all_nodes(bool p_show_all_nodes);
	void set_as_scene_tree_dock();
	void set_display_foreign_nodes(bool p_display);
	void set_marked(const HashSet<Node *> &p_marked, bool p_selectable = false, bool p_children_selectable = true);
	void set_marked(Node *p_marked, bool p_selectable = false, bool p_children_selectable = true);
	void set_selected(Node *p_node, bool p_emit_selected = true);
	Node *get_selected();
	void set_can_rename(bool p_can_rename) { can_rename = p_can_rename; }