### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
List<String>::Element *E = tabs_to_close.front();
	if (!E) {
		if (_is_closing_editor()) {
			current_menu_option = tab_closing_menu_option;
			_menu_option_confirm(tab_closing_menu_option, true);
		} else {
			current_menu_option = -1;
			save_confirmation->hide();
		}
		return;
	}
	String scene_to_close = E->get();
	tabs_to_close.pop_front();
	int tab_idx = -1;
	for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
		if (editor_data.get_scene_path(i) == scene_to_close) {
			tab_idx = i;
			break;
		}
	}
	ERR_FAIL_COND(tab_idx < 0);
	_scene_tab_closed(tab_idx);
}
bool EditorNode::_is_closing_editor() const {
	return tab_closing_menu_option == FILE_QUIT || tab_closing_menu_option == RUN_PROJECT_MANAGER || tab_closing_menu_option == RELOAD_CURRENT_PROJECT;
}
void EditorNode::_scene_tab_closed(int p_tab, int p_option) {