### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
EditorProgress save("save", TTR("Saving Scene"), 4);
	if (editor_data.get_edited_scene_root() != nullptr) {
		save.step(TTR("Analyzing"), 0);
		int c2d = 0;
		int c3d = 0;
		_find_node_types(editor_data.get_edited_scene_root(), c2d, c3d);
		save.step(TTR("Creating Thumbnail"), 1);
		
		Ref<Image> img;
		
		
		
		if (c3d == 0 && c2d == 0) {
			img.instantiate();
			img->initialize_data(1, 1, false, Image::FORMAT_RGB8);
		} else if (c3d < c2d) {
			Ref<ViewportTexture> viewport_texture = scene_root->get_texture();
			if (viewport_texture->get_width() > 0 && viewport_texture->get_height() > 0) {
				img = viewport_texture->get_image();