### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
accept->queue_free();
			}
			if (save_accept) {
				save_accept->queue_free();
			}
			editor_data.save_editor_external_data();
			FileAccess::set_file_close_fail_notify_callback(nullptr);
			log->deinit(); 
			editor_data.clear_edited_scenes();
		} break;
		case NOTIFICATION_READY: {
			{
				_initializing_plugins = true;
				Vector<String> addons;
				if (ProjectSettings::get_singleton()->has_setting("editor_plugins/enabled")) {
					addons = GLOBAL_GET("editor_plugins/enabled");
				}
				for (int i = 0; i < addons.size(); i++) {
					set_addon_plugin_enabled(addons[i], true);
				}
				_initializing_plugins = false;
				if (!pending_addons.is_empty()) {
					EditorFileSystem::get_singleton()->connect("script_classes_updated", callable_mp(this, &EditorNode::_enable_pending_addons));
				}
			}
			RenderingServer::get_singleton()->viewport_set_disable_2d(get_scene_root()->get_viewport_rid(), true);
			RenderingServer::get_singleton()->viewport_set_environment_mode(get_viewport()->get_viewport_rid(), RenderingServer::VIEWPORT_ENVIRONMENT_DISABLED);
			feature_profile_manager->notify_changed();
			_select_default_main_screen_plugin();