### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
vbc->add_child(disk_changed_list);
		disk_changed_list->set_v_size_flags(Control::SIZE_EXPAND_FILL);
		disk_changed->connect("confirmed", callable_mp(this, &EditorNode::_reload_modified_scenes));
		disk_changed->connect("confirmed", callable_mp(this, &EditorNode::_reload_project_settings));
		disk_changed->set_ok_button_text(TTR("Reload"));
		disk_changed->add_button(TTR("Resave"), !DisplayServer::get_singleton()->get_swap_cancel_ok(), "resave");
		disk_changed->connect("custom_action", callable_mp(this, &EditorNode::_resave_scenes));
	}
	gui_base->add_child(disk_changed);
	add_editor_plugin(memnew(AnimationPlayerEditorPlugin));
	add_editor_plugin(memnew(AnimationTrackKeyEditEditorPlugin));
	add_editor_plugin(memnew(CanvasItemEditorPlugin));
	add_editor_plugin(memnew(Node3DEditorPlugin));
	add_editor_plugin(memnew(ScriptEditorPlugin));
	EditorAudioBuses *audio_bus_editor = EditorAudioBuses::register_editor();
	ScriptTextEditor::register_editor(); 
	TextEditor::register_editor();
	if (AssetLibraryEditorPlugin::is_available()) {
		add_editor_plugin(memnew(AssetLibraryEditorPlugin));
	} else {
		print_verbose("Asset Library not available (due to using Web editor, or SSL support disabled).");
	}
	
	raise_bottom_panel_item(AnimationPlayerEditor::get_singleton());
	add_editor_plugin(VersionControlEditorPlugin::get_singleton());
	vcs_actions_menu = VersionControlEditorPlugin::get_singleton()->get_version_control_actions_panel();
	vcs_actions_menu->set_name("Version Control");
	vcs_actions_menu->connect("index_pressed", callable_mp(this, &EditorNode::_version_control_menu_option));
	vcs_actions_menu->add_item(TTR("Create Version Control Metadata"), RUN_VCS_METADATA);
	vcs_actions_menu->add_item(TTR("Version Control Settings"), RUN_VCS_SETTINGS);