### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
const Vector2i &coords = E.tile;
		const int &alternative = E.alternative;
		if (tile_set_atlas_source->has_tile(coords) && tile_set_atlas_source->has_alternative_tile(coords, alternative)) {
			TileData *tile_data = tile_set_atlas_source->get_tile_data(coords, alternative);
			if (!tile_data->is_connected(CoreStringNames::get_singleton()->property_list_changed, callable_mp((Object *)this, &Object::notify_property_list_changed))) {
				tile_data->connect(CoreStringNames::get_singleton()->property_list_changed, callable_mp((Object *)this, &Object::notify_property_list_changed));
			}
		}
	}
	notify_property_list_changed();
}
void TileSetAtlasSourceEditor::AtlasTileProxyObject::_bind_methods() {
	ADD_SIGNAL(MethodInfo("changed", PropertyInfo(Variant::STRING, "what")));
}
void TileSetAtlasSourceEditor::_inspector_property_selected(String p_property) {
	selected_property = p_property;
	_update_atlas_view();
	_update_current_tile_data_editor();
}
void TileSetAtlasSourceEditor::_update_tile_id_label() {
	if (selection.size() == 1) {
		TileSelection selected = selection.front()->get();
		tool_tile_id_label->set_text(vformat("%d, %s, %d", tile_set_atlas_source_id, selected.tile, selected.alternative));
		tool_tile_id_label->set_tooltip_text(vformat(TTR("Selected tile:\nSource: %d\nAtlas coordinates: %s\nAlternative: %d"), tile_set_atlas_source_id, selected.tile, selected.alternative));
		tool_tile_id_label->show();
	} else {
		tool_tile_id_label->hide();
	}
}
void TileSetAtlasSourceEditor::_update_source_inspector() {