### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
List<Ref<Resource>> changed;
	int rc = p_resources.size();
	for (int i = 0; i < rc; i++) {
		Ref<Resource> res = ResourceCache::get_ref(p_resources.get(i));
		if (res.is_null()) {
			continue;
		}
		if (!res->editor_can_reload_from_file()) {
			continue;
		}
		if (!res->get_path().is_resource_file() && !res->get_path().is_absolute_path()) {
			continue;
		}
		if (!FileAccess::exists(res->get_path())) {
			continue;
		}
		if (!res->get_import_path().is_empty()) {
			
			continue;
		}
		changed.push_back(res);
	}
	if (changed.size()) {
		for (Ref<Resource> &res : changed) {
			res->reload_from_file();
		}
	}
}
void EditorNode::_fs_changed() {