### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
hovered_alternative_tile_coords = Vector3i(TileSetSource::INVALID_ATLAS_COORDS.x, TileSetSource::INVALID_ATLAS_COORDS.y, TileSetSource::INVALID_TILE_ALTERNATIVE);
	tile_atlas_control->queue_redraw();
	tile_atlas_control_unscaled->queue_redraw();
	alternative_tiles_control->queue_redraw();
	alternative_tiles_control_unscaled->queue_redraw();
}
void TileSetAtlasSourceEditor::_tile_alternatives_control_draw() {
	
	if (tools_button_group->get_pressed_button() == tool_select_button) {
		
		Vector2i coords = Vector2(hovered_alternative_tile_coords.x, hovered_alternative_tile_coords.y);
		if (coords != TileSetSource::INVALID_ATLAS_COORDS) {
			Rect2i rect = tile_atlas_view->get_alternative_tile_rect(coords, hovered_alternative_tile_coords.z);
			if (rect != Rect2i()) {
				TilesEditorPlugin::draw_selection_rect(alternative_tiles_control, rect, Color(1.0, 0.8, 0.0, 0.5));
			}
		}
		
		for (const TileSelection &E : selection) {
			TileSelection selected = E;
			if (selected.alternative >= 1) {
				Rect2i rect = tile_atlas_view->get_alternative_tile_rect(selected.tile, selected.alternative);
				if (rect != Rect2i()) {
					TilesEditorPlugin::draw_selection_rect(alternative_tiles_control, rect);
				}
			}
		}
	}
}
void TileSetAtlasSourceEditor::_tile_alternatives_control_unscaled_draw() {