### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_READ_THREAD_GUARD_V(false);
	return own_world_3d.is_valid();
}
void Viewport::_propagate_enter_world_3d(Node *p_node) {
	if (p_node != this) {
		if (!p_node->is_inside_tree()) { 
			return;
		}
		if (Object::cast_to<Node3D>(p_node) || Object::cast_to<WorldEnvironment>(p_node)) {
			p_node->notification(Node3D::NOTIFICATION_ENTER_WORLD);
		} else {
			Viewport *v = Object::cast_to<Viewport>(p_node);
			if (v) {
				if (v->world_3d.is_valid() || v->own_world_3d.is_valid()) {
					return;
				}
			}
		}
	}
	for (int i = 0; i < p_node->get_child_count(); i++) {
		_propagate_enter_world_3d(p_node->get_child(i));
	}
}
void Viewport::_propagate_exit_world_3d(Node *p_node) {