### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
Node *scene = editor_data.get_edited_scene_root(scene_idx);
			if (scene && !scene->get_scene_file_path().is_empty()) {
				if (DirAccess::exists(scene->get_scene_file_path().get_base_dir())) {
					if (scene_idx != editor_data.get_edited_scene()) {
						_save_scene_with_preview(scene->get_scene_file_path(), scene_idx);
					} else {
						_save_scene_with_preview(scene->get_scene_file_path());
					}
					if (scene_idx != -1) {
						_discard_changes();
					}
					save_editor_layout_delayed();
				} else {
					show_save_accept(vformat(TTR("%s no longer exists! Please specify a new save location."), scene->get_scene_file_path().get_base_dir()), TTR("OK"));
				}
				break;
			}
			[[fallthrough]];
		}
		case FILE_SAVE_AS_SCENE: {
			int scene_idx = (p_option == FILE_SAVE_SCENE || p_option == FILE_SAVE_AS_SCENE) ? -1 : tab_closing_idx;
			Node *scene = editor_data.get_edited_scene_root(scene_idx);
			if (!scene) {
				if (p_option == FILE_SAVE_SCENE) {
					
					
					ScriptEditor::get_singleton()->save_current_script();
				}
				const int saved = _save_external_resources();
				if (saved > 0) {