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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

if (p_preset) {
		if (p_name == ("apk_expansion/public_key")) {
			bool apk_expansion = p_preset->get("apk_expansion/enable");
			String apk_expansion_pkey = p_preset->get("apk_expansion/public_key");
			if (apk_expansion && apk_expansion_pkey.is_empty()) {
				return TTR("Invalid public key for APK expansion.");
			}
		} else if (p_name == "package/unique_name") {
			String pn = p_preset->get("package/unique_name");
			String pn_err;
			if (!is_package_name_valid(pn, &pn_err)) {
				return TTR("Invalid package name:") + " " + pn_err;
			}
		} else if (p_name == "gradle_build/use_gradle_build") {
			bool gradle_build_enabled = p_preset->get("gradle_build/use_gradle_build");
			String enabled_plugins_names = PluginConfigAndroid::get_plugins_names(get_enabled_plugins(Ref<EditorExportPreset>(p_preset)));
			if (!enabled_plugins_names.is_empty() && !gradle_build_enabled) {
				return TTR("\"Use Gradle Build\" must be enabled to use the plugins.");
			}
		} else if (p_name == "xr_features/xr_mode") {
			bool gradle_build_enabled = p_preset->get("gradle_build/use_gradle_build");
			int xr_mode_index = p_preset->get("xr_features/xr_mode");
			if (xr_mode_index == XR_MODE_OPENXR && !gradle_build_enabled) {
				return TTR("OpenXR requires \"Use Gradle Build\" to be enabled");
			}
		} else if (p_name == "xr_features/hand_tracking") {
			int xr_mode_index = p_preset->get("xr_features/xr_mode");
			int hand_tracking = p_preset->get("xr_features/hand_tracking");
			if (xr_mode_index != XR_MODE_OPENXR) {
				if (hand_tracking > XR_HAND_TRACKING_NONE) {