### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
String scene_file_path = p_node->get_scene_file_path();
	
	if (p_node->get_scene_file_path() == p_instance_path) {
		p_instance_list.push_back(p_node);
	} else {
		Node *current_node = p_node;
		Ref<SceneState> inherited_state = current_node->get_scene_inherited_state();
		while (inherited_state.is_valid()) {
			String inherited_path = inherited_state->get_path();
			if (inherited_path == p_instance_path) {
				p_instance_list.push_back(p_node);
				break;
			}
			inherited_state = inherited_state->get_base_scene_state();
		}
	}
	for (int i = 0; i < p_node->get_child_count(); i++) {
		Node *child = p_node->get_child(i);
		find_all_instances_inheriting_path_in_node(p_root, child, p_instance_path, p_instance_list);
	}
}
void EditorNode::reload_instances_with_path_in_edited_scenes(const String &p_instance_path) {
	int original_edited_scene_idx = editor_data.get_edited_scene();
	HashMap<int, List<Node *>> edited_scene_map;
	
	
	for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
		if (editor_data.get_scene_path(i) != p_instance_path) {