### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (!bool(EDITOR_GET("interface/scene_tabs/restore_scenes_on_load"))) {
		return;
	}
	if (!p_layout->has_section(EDITOR_NODE_CONFIG_SECTION) ||
			!p_layout->has_section_key(EDITOR_NODE_CONFIG_SECTION, "open_scenes")) {
		return;
	}
	restoring_scenes = true;
	PackedStringArray scenes = p_layout->get_value(EDITOR_NODE_CONFIG_SECTION, "open_scenes");
	for (int i = 0; i < scenes.size(); i++) {
		load_scene(scenes[i]);
	}
	if (p_layout->has_section_key(EDITOR_NODE_CONFIG_SECTION, "current_scene")) {
		String current_scene = p_layout->get_value(EDITOR_NODE_CONFIG_SECTION, "current_scene");
		int current_scene_idx = scenes.find(current_scene);
		set_current_scene(current_scene_idx);
	}
	save_editor_layout_delayed();
	restoring_scenes = false;
}
bool EditorNode::has_scenes_in_session() {