### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (singleton->cmdline_export_mode) {
		print_line(p_task + ": begin: " + p_label + " steps: " + itos(p_steps));
	} else if (singleton->progress_dialog) {
		singleton->progress_dialog->add_task(p_task, p_label, p_steps, p_can_cancel);
	}
}
bool EditorNode::progress_task_step(const String &p_task, const String &p_state, int p_step, bool p_force_refresh) {
	if (singleton->cmdline_export_mode) {
		print_line("\t" + p_task + ": step " + itos(p_step) + ": " + p_state);
		return false;
	} else if (singleton->progress_dialog) {
		return singleton->progress_dialog->task_step(p_task, p_state, p_step, p_force_refresh);
	} else {
		return false;
	}
}
void EditorNode::progress_end_task(const String &p_task) {
	if (singleton->cmdline_export_mode) {
		print_line(p_task + ": end");
	} else if (singleton->progress_dialog) {
		singleton->progress_dialog->end_task(p_task);
	}
}
void EditorNode::progress_add_task_bg(const String &p_task, const String &p_label, int p_steps) {