### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
OS::get_singleton()->shell_open("https:github.com/godotengine/godot/issues");
		} break;
		case HELP_COPY_SYSTEM_INFO: {
			String info = _get_system_info();
			DisplayServer::get_singleton()->clipboard_set(info);
		} break;
		case HELP_SUGGEST_A_FEATURE: {
			OS::get_singleton()->shell_open("https:github.com/godotengine/godot-proposals#readme");
		} break;
		case HELP_SEND_DOCS_FEEDBACK: {
			OS::get_singleton()->shell_open("https:github.com/godotengine/godot-docs/issues");
		} break;
		case HELP_COMMUNITY: {
			OS::get_singleton()->shell_open("https:godotengine.org/community");
		} break;
		case HELP_ABOUT: {
			about->popup_centered(Size2(780, 500) * EDSCALE);
		} break;
		case HELP_SUPPORT_GODOT_DEVELOPMENT: {
			OS::get_singleton()->shell_open("https:godotengine.org/donate");
		} break;
		case SET_RENDERER_NAME_SAVE_AND_RESTART: {
			ProjectSettings::get_singleton()->set("rendering/renderer/rendering_method", renderer_request);
			ProjectSettings::get_singleton()->save();
			save_all_scenes();
			restart_editor();
		} break;
	}
}
String EditorNode::adjust_scene_name_casing(const String &root_name) {