### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
tile_data_editors_popup->call_deferred(SNAME("hide"));
	_update_current_tile_data_editor();
	tile_atlas_control->queue_redraw();
	tile_atlas_control_unscaled->queue_redraw();
	alternative_tiles_control->queue_redraw();
	alternative_tiles_control_unscaled->queue_redraw();
}
void TileSetAtlasSourceEditor::_update_atlas_view() {
	
	tile_atlas_view->set_atlas_source(*tile_set, tile_set_atlas_source, tile_set_atlas_source_id);
	
	for (int i = 0; i < alternative_tiles_control->get_child_count(); i++) {
		alternative_tiles_control->get_child(i)->queue_free();
	}
	if (tile_set.is_null()) {
		return;
	}
	Vector2i pos;
	Vector2 texture_region_base_size = tile_set_atlas_source->get_texture_region_size();
	int texture_region_base_size_min = MIN(texture_region_base_size.x, texture_region_base_size.y);
	for (int i = 0; i < tile_set_atlas_source->get_tiles_count(); i++) {
		Vector2i tile_id = tile_set_atlas_source->get_tile_id(i);
		int alternative_count = tile_set_atlas_source->get_alternative_tiles_count(tile_id);
		if (alternative_count > 1) {
			
			int y_increment = 0;
			pos.x = 0;
			for (int j = 1; j < alternative_count; j++) {
				int alternative_id = tile_set_atlas_source->get_alternative_tile_id(tile_id, j);