### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_FAIL_COND(p_event.is_null());
	Ref<InputEventMouseButton> mb = p_event;
	if (mb.is_valid()) {
		if (!mb->is_pressed()) {
			gui.mouse_focus_mask.clear_flag(mouse_button_to_mask(mb->get_button_index())); 
		}
	}
}
List<Control *>::Element *Viewport::_gui_add_root_control(Control *p_control) {
	gui.roots_order_dirty = true;
	return gui.roots.push_back(p_control);
}
void Viewport::gui_set_root_order_dirty() {
	ERR_MAIN_THREAD_GUARD;
	gui.roots_order_dirty = true;
}
void Viewport::_gui_force_drag(Control *p_base, const Variant &p_data, Control *p_control) {
	ERR_FAIL_COND_MSG(p_data.get_type() == Variant::NIL, "Drag data must be a value.");
	gui.dragging = true;
	gui.drag_data = p_data;
	gui.mouse_focus = nullptr;
	if (p_control) {
		_gui_set_drag_preview(p_base, p_control);
	}
	_propagate_viewport_notification(this, NOTIFICATION_DRAG_BEGIN);
}
void Viewport::_gui_set_drag_preview(Control *p_base, Control *p_control) {