### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
}
	editor_selection->clear();
	editor_data.set_edited_scene(p_idx);
	Node *new_scene = editor_data.get_edited_scene_root();
	if (Popup *p = Object::cast_to<Popup>(new_scene)) {
		p->show();
	}
	SceneTreeDock::get_singleton()->set_edited_scene(new_scene);
	if (get_tree()) {
		get_tree()->set_edited_scene_root(new_scene);
	}
	if (new_scene) {
		if (new_scene->get_parent() != scene_root) {
			scene_root->add_child(new_scene, true);
		}
	}
	Dictionary state = editor_data.restore_edited_scene_state(editor_selection, &editor_history);
	_edit_current(true);
	_update_title();
	_update_scene_tabs();
	call_deferred(SNAME("_set_main_scene_state"), state, get_edited_scene()); 
}
void EditorNode::setup_color_picker(ColorPicker *p_picker) {
	p_picker->set_editor_settings(EditorSettings::get_singleton());
	int default_color_mode = EDITOR_GET("interface/inspector/default_color_picker_mode");
	int picker_shape = EDITOR_GET("interface/inspector/default_color_picker_shape");
	p_picker->set_color_mode((ColorPicker::ColorModeType)default_color_mode);
	p_picker->set_picker_shape((ColorPicker::PickerShapeType)picker_shape);
}
bool EditorNode::is_scene_open(const String &p_path) {