### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Node *scene = editor_data.get_edited_scene_root(p_idx);
	if (!scene) {
		return;
	}
	String path = EditorPaths::get_singleton()->get_project_settings_dir().path_join(p_file.get_file() + "-editstate-" + p_file.md5_text() + ".cfg");
	Ref<ConfigFile> cf;
	cf.instantiate();
	Dictionary md;
	if (p_idx < 0 || editor_data.get_edited_scene() == p_idx) {
		md = editor_data.get_editor_plugin_states();
	} else {
		md = editor_data.get_scene_editor_states(p_idx);
	}
	List<Variant> keys;
	md.get_key_list(&keys);
	for (const Variant &E : keys) {
		cf->set_value("editor_states", E, md[E]);
	}
	
	List<Node *> selection = editor_selection->get_full_selected_node_list();
	TypedArray<NodePath> selection_paths;
	for (Node *selected_node : selection) {
		selection_paths.push_back(selected_node->get_path());
	}
	cf->set_value("editor_states", "selected_nodes", selection_paths);
	Error err = cf->save(path);
	ERR_FAIL_COND_MSG(err != OK, "Cannot save config file to '" + path + "'.");
}
bool EditorNode::_find_and_save_resource(Ref<Resource> p_res, HashMap<Ref<Resource>, bool> &processed, int32_t flags) {