### Godot version

4.1.1-stable

### System information

Windows 10

### Issue description

When the project loads in editor, all the settings defined in project settings will be loaded over the default values, but when running the game nearly 95% of them will be ignored resulting in just loading the default settings.

here it's just loading only 4 variables from project setting and i have added the fifth in this pull request https://github.com/godotengine/godot/pull/80151
![image](https://github.com/godotengine/godot/assets/53877170/926168a6-e6d3-4983-b59d-7fd202db681d)

}
void RasterizerCanvasGLES3::canvas_begin(RID p_to_render_target, bool p_to_backbuffer) {
	GLES3::TextureStorage *texture_storage = GLES3::TextureStorage::get_singleton();
	GLES3::Config *config = GLES3::Config::get_singleton();
	GLES3::RenderTarget *render_target = texture_storage->get_render_target(p_to_render_target);
	if (p_to_backbuffer) {
		glBindFramebuffer(GL_FRAMEBUFFER, render_target->backbuffer_fbo);
		glActiveTexture(GL_TEXTURE0 + config->max_texture_image_units - 4);
		GLES3::Texture *tex = texture_storage->get_texture(texture_storage->texture_gl_get_default(GLES3::DEFAULT_GL_TEXTURE_WHITE));
		glBindTexture(GL_TEXTURE_2D, tex->tex_id);
	} else {
		glBindFramebuffer(GL_FRAMEBUFFER, render_target->fbo);
		glActiveTexture(GL_TEXTURE0 + config->max_texture_image_units - 4);
		glBindTexture(GL_TEXTURE_2D, render_target->backbuffer);
	}
	if (render_target->is_transparent || p_to_backbuffer) {
		state.transparent_render_target = true;
		glBlendFuncSeparate(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA, GL_ONE, GL_ONE_MINUS_SRC_ALPHA);