### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
_menu_option_confirm(p_option, false);
}
void EditorNode::_menu_confirm_current() {
	_menu_option_confirm(current_menu_option, true);
}
void EditorNode::_dialog_display_save_error(String p_file, Error p_error) {
	if (p_error) {
		switch (p_error) {
			case ERR_FILE_CANT_WRITE: {
				show_accept(TTR("Can't open file for writing:") + " " + p_file.get_extension(), TTR("OK"));
			} break;
			case ERR_FILE_UNRECOGNIZED: {
				show_accept(TTR("Requested file format unknown:") + " " + p_file.get_extension(), TTR("OK"));
			} break;
			default: {
				show_accept(TTR("Error while saving."), TTR("OK"));
			} break;
		}
	}
}
void EditorNode::_dialog_display_load_error(String p_file, Error p_error) {