### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
help_menu->add_icon_shortcut(gui_base->get_theme_icon(SNAME("Godot"), SNAME("EditorIcons")), ED_SHORTCUT_AND_COMMAND("editor/about", TTR("About Godot")), HELP_ABOUT);
	}
	help_menu->add_icon_shortcut(gui_base->get_theme_icon(SNAME("Heart"), SNAME("EditorIcons")), ED_SHORTCUT_AND_COMMAND("editor/support_development", TTR("Support Godot Development")), HELP_SUPPORT_GODOT_DEVELOPMENT);
	
	Control *right_spacer = memnew(Control);
	right_spacer->set_mouse_filter(Control::MOUSE_FILTER_PASS);
	right_spacer->set_h_size_flags(Control::SIZE_EXPAND_FILL);
	title_bar->add_child(right_spacer);
	project_run_bar = memnew(EditorRunBar);
	title_bar->add_child(project_run_bar);
	project_run_bar->connect("play_pressed", callable_mp(this, &EditorNode::_project_run_started));
	project_run_bar->connect("stop_pressed", callable_mp(this, &EditorNode::_project_run_stopped));
	HBoxContainer *right_menu_hb = memnew(HBoxContainer);
	title_bar->add_child(right_menu_hb);
	renderer = memnew(OptionButton);
	renderer->set_visible(true);
	renderer->set_flat(true);
	renderer->set_fit_to_longest_item(false);
	renderer->set_focus_mode(Control::FOCUS_NONE);
	renderer->connect("item_selected", callable_mp(this, &EditorNode::_renderer_selected));
	renderer->add_theme_font_override("font", gui_base->get_theme_font(SNAME("bold"), SNAME("EditorFonts")));
	renderer->add_theme_font_size_override("font_size", gui_base->get_theme_font_size(SNAME("bold_size"), SNAME("EditorFonts")));
	renderer->set_tooltip_text(TTR("Choose a renderer."));
	right_menu_hb->add_child(renderer);
	if (can_expand) {
		
		right_menu_spacer = memnew(Control);
		right_menu_spacer->set_mouse_filter(Control::MOUSE_FILTER_PASS);
		title_bar->add_child(right_menu_spacer);
	}