### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if ((int)Input::get_singleton()->get_mouse_button_mask() & 0x7) {
				log->add_message(TTR("Can't undo while mouse buttons are pressed."), EditorLog::MSG_TYPE_EDITOR);
			} else {
				EditorUndoRedoManager *undo_redo = EditorUndoRedoManager::get_singleton();
				String action = undo_redo->get_current_action_name();
				int id = undo_redo->get_current_action_history_id();
				if (!undo_redo->undo()) {
					log->add_message(TTR("Nothing to undo."), EditorLog::MSG_TYPE_EDITOR);
				} else if (!action.is_empty()) {
					switch (id) {
						case EditorUndoRedoManager::GLOBAL_HISTORY:
							log->add_message(vformat(TTR("Global Undo: %s"), action), EditorLog::MSG_TYPE_EDITOR);
							break;
						case EditorUndoRedoManager::REMOTE_HISTORY:
							log->add_message(vformat(TTR("Remote Undo: %s"), action), EditorLog::MSG_TYPE_EDITOR);
							break;
						default:
							log->add_message(vformat(TTR("Scene Undo: %s"), action), EditorLog::MSG_TYPE_EDITOR);
					}
				}
			}
		} break;
		case EDIT_REDO: {
			EditorUndoRedoManager *undo_redo = EditorUndoRedoManager::get_singleton();
			if ((int)Input::get_singleton()->get_mouse_button_mask() & 0x7) {
				log->add_message(TTR("Can't redo while mouse buttons are pressed."), EditorLog::MSG_TYPE_EDITOR);
			} else {
				if (!undo_redo->redo()) {
					log->add_message(TTR("Nothing to redo."), EditorLog::MSG_TYPE_EDITOR);
				} else {