### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (p_idx == 0) { 
		current_menu_option = FILE_EXPORT_MESH_LIBRARY;
		if (!editor_data.get_edited_scene_root()) {
			show_accept(TTR("This operation can't be done without a scene."), TTR("OK"));
			return;
		}
		List<String> extensions;
		Ref<MeshLibrary> ml(memnew(MeshLibrary));
		ResourceSaver::get_recognized_extensions(ml, &extensions);
		file_export_lib->clear_filters();
		for (const String &E : extensions) {
			file_export_lib->add_filter("*." + E);
		}
		file_export_lib->popup_file_dialog();
		file_export_lib->set_title(TTR("Export Mesh Library"));
	} else { 
		if (export_as_menu->get_item_submenu(p_idx).is_empty()) { 
			Callable callback = export_as_menu->get_item_metadata(p_idx);
			Callable::CallError ce;
			Variant result;
			callback.callp(nullptr, 0, result, ce);
			if (ce.error != Callable::CallError::CALL_OK) {
				String err = Variant::get_callable_error_text(callback, nullptr, 0, ce);
				ERR_PRINT("Error calling function from export_as menu: " + err);
			}
		}
	}
}
int EditorNode::_next_unsaved_scene(bool p_valid_filename, int p_start) {