### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
List<Node *> nodes_owned_by_original_node;
				original_node->get_owned_by(original_node, &nodes_owned_by_original_node);
				for (Node *owned_node : nodes_owned_by_original_node) {
					owned_node->set_owner(nullptr);
				}
				
				while (original_node->get_child_count()) {
					Node *child = original_node->get_child(0);
					original_node->remove_child(child);
					child->queue_free();
				}
				
				bool is_editable = true;
				Node *owner = original_node->get_owner();
				if (owner) {
					is_editable = owner->is_editable_instance(original_node);
				}
				
				Ref<PackedScene> current_packed_scene;
				if (original_node->get_scene_file_path() == p_instance_path) {
					
					
					current_packed_scene = instance_scene_packed_scene;
				} else {
					
					
					List<String> required_load_paths;
					String scene_path = original_node->get_scene_file_path();