### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
editor_layout_save_delay_timer->start();
}
void EditorNode::_dock_split_dragged(int ofs) {
	editor_layout_save_delay_timer->start();
}
void EditorNode::_load_editor_layout() {
	Ref<ConfigFile> config;
	config.instantiate();
	Error err = config->load(EditorPaths::get_singleton()->get_project_settings_dir().path_join("editor_layout.cfg"));
	if (err != OK) { 
		
		TreeItem *root = FileSystemDock::get_singleton()->get_tree_control()->get_item_with_metadata("res:", 0);
		if (root) {
			root->set_collapsed(false);
		}
		if (overridden_default_layout >= 0) {
			_layout_menu_option(overridden_default_layout);
		}
		return;
	}
	_load_docks_from_config(config, "docks");
	_load_open_scenes_from_config(config);
	_load_central_editor_layout_from_config(config);
	editor_data.set_plugin_window_layout(config);
}
void EditorNode::_update_dock_slots_visibility(bool p_keep_selected_tabs) {