### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
tool_settings->add_child(tool_advanced_menu_button);
	_update_toolbar();
	
	Control *middle_space = memnew(Control);
	middle_space->set_h_size_flags(SIZE_EXPAND_FILL);
	tool_settings->add_child(middle_space);
	tool_tile_id_label = memnew(Label);
	tool_tile_id_label->set_mouse_filter(Control::MOUSE_FILTER_STOP);
	tool_settings->add_child(tool_tile_id_label);
	_update_tile_id_label();
	
	VBoxContainer *right_panel = memnew(VBoxContainer);
	right_panel->set_h_size_flags(SIZE_EXPAND_FILL);
	right_panel->set_v_size_flags(SIZE_EXPAND_FILL);
	right_vbox_container->add_child(right_panel);
	
	tile_atlas_view = memnew(TileAtlasView);
	tile_atlas_view->set_h_size_flags(SIZE_EXPAND_FILL);
	tile_atlas_view->set_v_size_flags(SIZE_EXPAND_FILL);
	tile_atlas_view->set_custom_minimum_size(Size2(200, 0) * EDSCALE);
	tile_atlas_view->connect("transform_changed", callable_mp(TilesEditorPlugin::get_singleton(), &TilesEditorPlugin::set_atlas_view_transform));
	tile_atlas_view->connect("transform_changed", callable_mp(this, &TileSetAtlasSourceEditor::_tile_atlas_view_transform_changed).unbind(2));
	right_panel->add_child(tile_atlas_view);
	base_tile_popup_menu = memnew(PopupMenu);
	base_tile_popup_menu->add_shortcut(ED_SHORTCUT("tiles_editor/delete", TTR("Delete"), Key::KEY_DELETE), TILE_DELETE);
	base_tile_popup_menu->add_item(TTR("Create an Alternative Tile"), TILE_CREATE_ALTERNATIVE);
	base_tile_popup_menu->connect("id_pressed", callable_mp(this, &TileSetAtlasSourceEditor::_menu_option));
	tile_atlas_view->add_child(base_tile_popup_menu);
	empty_base_tile_popup_menu = memnew(PopupMenu);
	empty_base_tile_popup_menu->add_item(TTR("Create a Tile"), TILE_CREATE);