### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Rect2i rect = tile_atlas_view->get_alternative_tile_rect(tile_id, alternative_id);
				pos.x = MAX(pos.x, rect.get_end().x);
				y_increment = MAX(y_increment, rect.size.y);
			}
			
			Button *button = memnew(Button);
			alternative_tiles_control->add_child(button);
			button->set_flat(true);
			button->set_icon(get_theme_icon(SNAME("Add"), SNAME("EditorIcons")));
			button->add_theme_style_override("normal", memnew(StyleBoxEmpty));
			button->add_theme_style_override("hover", memnew(StyleBoxEmpty));
			button->add_theme_style_override("focus", memnew(StyleBoxEmpty));
			button->add_theme_style_override("pressed", memnew(StyleBoxEmpty));
			button->connect("pressed", callable_mp(tile_set_atlas_source, &TileSetAtlasSource::create_alternative_tile).bind(tile_id, TileSetSource::INVALID_TILE_ALTERNATIVE));
			button->set_rect(Rect2(Vector2(pos.x, pos.y + (y_increment - texture_region_base_size.y) / 2.0), Vector2(texture_region_base_size_min, texture_region_base_size_min)));
			button->set_expand_icon(true);
			pos.y += y_increment;
		}
	}
	tile_atlas_view->set_padding(Side::SIDE_RIGHT, texture_region_base_size_min);
	
	tile_atlas_control->queue_redraw();
	tile_atlas_control_unscaled->queue_redraw();
	alternative_tiles_control->queue_redraw();
	alternative_tiles_control_unscaled->queue_redraw();
	tile_atlas_view->queue_redraw();
	
	TilesEditorPlugin::get_singleton()->synchronize_atlas_view(tile_atlas_view);
}
void TileSetAtlasSourceEditor::_update_toolbar() {