### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ERR_FAIL_COND_V(!p_object, false);
	Ref<Script> scr = p_object->get_script();
	if (scr.is_null() && Object::cast_to<Script>(p_object)) {
		scr = p_object;
	}
	if (scr.is_valid()) {
		Ref<Script> base_script = scr;
		while (base_script.is_valid()) {
			StringName name = EditorNode::get_editor_data().script_class_get_name(base_script->get_path());
			if (name == p_class) {
				return true;
			}
			base_script = base_script->get_base_script();
		}
	}
	return false;
}
void EditorNode::progress_add_task(const String &p_task, const String &p_label, int p_steps, bool p_can_cancel) {
	if (singleton->cmdline_export_mode) {
		print_line(p_task + ": begin: " + p_label + " steps: " + itos(p_steps));
	} else if (singleton->progress_dialog) {
		singleton->progress_dialog->add_task(p_task, p_label, p_steps, p_can_cancel);
	}
}
bool EditorNode::progress_task_step(const String &p_task, const String &p_state, int p_step, bool p_force_refresh) {