### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

break;
						}
					}
					if (ci->is_set_as_top_level()) {
						break;
					}
					ci = ci->get_parent_item();
				}
			}
			bool stopped = gui.mouse_focus && gui.mouse_focus->can_process() && _gui_call_input(gui.mouse_focus, mb);
			if (stopped) {
				set_input_as_handled();
			}
			if (gui.dragging && mb->get_button_index() == MouseButton::LEFT) {
				
				_perform_drop(gui.mouse_focus, pos);
			}
			_gui_cancel_tooltip();
		} else {
			if (gui.dragging && mb->get_button_index() == MouseButton::LEFT) {
				_perform_drop(gui.drag_mouse_over, gui.drag_mouse_over_pos);
			}
			gui.mouse_focus_mask.clear_flag(mouse_button_to_mask(mb->get_button_index())); 
			if (!gui.mouse_focus) {
				
				return;
			}
			mb = mb->xformed_by(Transform2D()); 
			Point2 pos = gui.mouse_focus->get_global_transform_with_canvas().affine_inverse().xform(mpos);
			mb->set_position(pos);