### Godot version

4.1.dev3

### System information

Tested with Linux and Android

### Issue description

Since #73256 you can now export a typed array of nodes which holds references to the nodes assigned in the inspector. However, if you export the project you just get an empty array.

### Steps to reproduce

Export a project that makes use of exported node arrays.

### Minimal reproduction project

[test.zip](https://github.com/godotengine/godot/files/11596494/test.zip)

ERR_FAIL_INDEX_V(p_idx, nodes.size(), NodePath());
	if (nodes[p_idx].owner < 0 || nodes[p_idx].owner == NO_PARENT_SAVED) {
		return NodePath(); 
	}
	if (nodes[p_idx].owner & FLAG_ID_IS_PATH) {
		return node_paths[nodes[p_idx].owner & FLAG_MASK];
	} else {
		return get_node_path(nodes[p_idx].owner & FLAG_MASK);
	}
}
int SceneState::get_connection_count() const {
	return connections.size();
}
NodePath SceneState::get_connection_source(int p_idx) const {
	ERR_FAIL_INDEX_V(p_idx, connections.size(), NodePath());
	if (connections[p_idx].from & FLAG_ID_IS_PATH) {
		return node_paths[connections[p_idx].from & FLAG_MASK];
	} else {
		return get_node_path(connections[p_idx].from & FLAG_MASK);
	}
}
StringName SceneState::get_connection_signal(int p_idx) const {
	ERR_FAIL_INDEX_V(p_idx, connections.size(), StringName());
	return names[connections[p_idx].signal];
}
NodePath SceneState::get_connection_target(int p_idx) const {