### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
for (int i = 0; i < vsplits.size(); i++) {
			vsplits[i]->hide();
		}
		right_hsplit->hide();
		bottom_panel->hide();
	} else {
		for (int i = 0; i < DOCK_SLOT_MAX; i++) {
			if (dock_slot[i]->get_tab_count()) {
				dock_slot[i]->show();
			} else {
				dock_slot[i]->hide();
			}
		}
		for (int i = 0; i < vsplits.size(); i++) {
			bool in_use = dock_slot[i * 2 + 0]->get_tab_count() || dock_slot[i * 2 + 1]->get_tab_count();
			if (in_use) {
				vsplits[i]->show();
			} else {
				vsplits[i]->hide();
			}
		}
		bottom_panel->show();
		if (right_l_vsplit->is_visible() || right_r_vsplit->is_visible()) {
			right_hsplit->show();
		} else {
			right_hsplit->hide();
		}
	}
}
void EditorNode::_restore_floating_dock(const Dictionary &p_dock_dump, Control *p_dock, int p_slot_index) {