### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
saving_resource = Ref<Resource>();
			ObjectID current_id = editor_history.get_current();
			Object *current_obj = current_id.is_valid() ? ObjectDB::get_instance(current_id) : nullptr;
			ERR_FAIL_COND(!current_obj);
			current_obj->notify_property_list_changed();
		} break;
		case SETTINGS_LAYOUT_SAVE: {
			if (p_file.is_empty()) {
				return;
			}
			Ref<ConfigFile> config;
			config.instantiate();
			Error err = config->load(EditorSettings::get_singleton()->get_editor_layouts_config());
			if (err == ERR_FILE_CANT_OPEN || err == ERR_FILE_NOT_FOUND) {
				config.instantiate();
			} else if (err != OK) {
				show_warning(TTR("An error occurred while trying to save the editor layout.\nMake sure the editor's user data path is writable."));
				return;
			}
			_save_docks_to_config(config, p_file);
			config->save(EditorSettings::get_singleton()->get_editor_layouts_config());
			layout_dialog->hide();
			_update_layouts_menu();
			if (p_file == "Default") {
				show_warning(TTR("Default editor layout overridden.\nTo restore the Default layout to its base settings, use the Delete Layout option and delete the Default layout."));
			}
		} break;
		case SETTINGS_LAYOUT_DELETE: {
			if (p_file.is_empty()) {
				return;