### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
String current_renderer = GLOBAL_GET("rendering/renderer/rendering_method");
	PackedStringArray renderers = ProjectSettings::get_singleton()->get_custom_property_info().get(StringName("rendering/renderer/rendering_method")).hint_string.split(",", false);
	
	
	current_renderer = current_renderer.to_lower();
	for (int i = 0; i < renderers.size(); i++) {
		String rendering_method = renderers[i];
		
		if (rendering_method == "forward_plus") {
			renderer->add_item(TTR("Forward+"));
		}
		if (rendering_method == "mobile") {
			renderer->add_item(TTR("Mobile"));
		}
		if (rendering_method == "gl_compatibility") {
			renderer->add_item(TTR("Compatibility"));
		}
		renderer->set_item_metadata(i, rendering_method);
		
		rendering_method = rendering_method.to_lower();
		if (current_renderer == rendering_method) {
			renderer->select(i);
			renderer_current = i;
		}
	}
	_update_renderer_color();
	video_restart_dialog = memnew(ConfirmationDialog);
	video_restart_dialog->set_text(TTR("Changing the renderer requires restarting the editor."));
	video_restart_dialog->set_ok_button_text(TTR("Save & Restart"));
	video_restart_dialog->connect("confirmed", callable_mp(this, &EditorNode::_menu_option).bind(SET_RENDERER_NAME_SAVE_AND_RESTART));