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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

add_message(EXPORT_MESSAGE_WARNING, TTR("Code Signing"), vformat(TTR("'apksigner' could not be found. Please check that the command is available in the Android SDK build-tools directory. The resulting %s is unsigned."), export_label));
		return OK;
	}
	String keystore;
	String password;
	String user;
	if (p_debug) {
		keystore = p_preset->get_or_env("keystore/debug", ENV_ANDROID_KEYSTORE_DEBUG_PATH);
		password = p_preset->get_or_env("keystore/debug_password", ENV_ANDROID_KEYSTORE_DEBUG_PASS);
		user = p_preset->get_or_env("keystore/debug_user", ENV_ANDROID_KEYSTORE_DEBUG_USER);
		if (keystore.is_empty()) {
			keystore = EDITOR_GET("export/android/debug_keystore");
			password = EDITOR_GET("export/android/debug_keystore_pass");
			user = EDITOR_GET("export/android/debug_keystore_user");
		}
		if (ep.step(vformat(TTR("Signing debug %s..."), export_label), 104)) {
			return ERR_SKIP;
		}
	} else {
		keystore = release_keystore;
		password = release_password;
		user = release_username;
		if (ep.step(vformat(TTR("Signing release %s..."), export_label), 104)) {
			return ERR_SKIP;
		}
	}
	if (!FileAccess::exists(keystore)) {
		add_message(EXPORT_MESSAGE_WARNING, TTR("Code Signing"), TTR("Could not find keystore, unable to export."));
		return ERR_FILE_CANT_OPEN;
	}