### Godot version

4.1.1-stable

### System information

Windows 10

### Issue description

When the project loads in editor, all the settings defined in project settings will be loaded over the default values, but when running the game nearly 95% of them will be ignored resulting in just loading the default settings.

here it's just loading only 4 variables from project setting and i have added the fifth in this pull request https://github.com/godotengine/godot/pull/80151
![image](https://github.com/godotengine/godot/assets/53877170/926168a6-e6d3-4983-b59d-7fd202db681d)

GLuint new_buffers[3];
	glGenBuffers(3, new_buffers);
	
	glBindBuffer(GL_ARRAY_BUFFER, new_buffers[0]);
	GLES3::Utilities::get_singleton()->buffer_allocate_data(GL_ARRAY_BUFFER, new_buffers[0], data.max_instance_buffer_size, nullptr, GL_STREAM_DRAW, "2D Batch UBO[" + itos(state.current_data_buffer_index) + "][0]");
	
	glBindBuffer(GL_UNIFORM_BUFFER, new_buffers[1]);
	GLES3::Utilities::get_singleton()->buffer_allocate_data(GL_UNIFORM_BUFFER, new_buffers[1], sizeof(LightUniform) * data.max_lights_per_render, nullptr, GL_STREAM_DRAW, "2D Lights UBO[" + itos(state.current_data_buffer_index) + "]");
	
	glBindBuffer(GL_UNIFORM_BUFFER, new_buffers[2]);
	GLES3::Utilities::get_singleton()->buffer_allocate_data(GL_UNIFORM_BUFFER, new_buffers[2], sizeof(StateBuffer), nullptr, GL_STREAM_DRAW, "2D State UBO[" + itos(state.current_data_buffer_index) + "]");
	state.current_data_buffer_index = (state.current_data_buffer_index + 1);
	DataBuffer db;
	db.instance_buffers.push_back(new_buffers[0]);
	db.light_ubo = new_buffers[1];
	db.state_ubo = new_buffers[2];
	db.last_frame_used = RSG::rasterizer->get_frame_number();
	state.canvas_instance_data_buffers.insert(state.current_data_buffer_index, db);
	state.current_data_buffer_index = state.current_data_buffer_index % state.canvas_instance_data_buffers.size();
	glBindBuffer(GL_ARRAY_BUFFER, 0);
	glBindBuffer(GL_UNIFORM_BUFFER, 0);
}
void RasterizerCanvasGLES3::_allocate_instance_buffer() {