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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

#define CLEANUP_AND_RETURN(m_err)                         \
	{                                                     \
		DirAccess::remove_file_or_error(tmp_export_path); \
		return m_err;                                     \
	}                                                     \
	((void)0)
	
	Error err = export_project_helper(p_preset, true, tmp_export_path, EXPORT_FORMAT_APK, true, p_debug_flags);
	if (err != OK) {
		CLEANUP_AND_RETURN(err);
	}
	List<String> args;
	int rv;
	String output;
	bool remove_prev = EDITOR_GET("export/android/one_click_deploy_clear_previous_install");
	String version_name = p_preset->get("version/name");
	String package_name = p_preset->get("package/unique_name");
	if (remove_prev) {
		if (ep.step(TTR("Uninstalling..."), 1)) {
			CLEANUP_AND_RETURN(ERR_SKIP);
		}
		print_line("Uninstalling previous version: " + devices[p_device].name);
		args.push_back("-s");
		args.push_back(devices[p_device].id);
		args.push_back("uninstall");
		args.push_back(get_package_name(package_name));
		output.clear();
		err = OS::get_singleton()->execute(adb, args, &output, &rv, true);
		print_verbose(output);
	}