### Godot version

v4.2.dev.custom_build [c3b0a92c3]

### System information

Debian Linux X11 Xfce

### Issue description

In the following scene tree it is not possible to write anything in `LineEditB`.
![image](https://github.com/godotengine/godot/assets/6299227/ce5f696a-d86a-402f-98f7-6a762f15543e)

I would expect, that it is possible to focus `LineEditB` with a mouse click and write into it.

Regression from #58334

### Steps to reproduce

1. Load and run MRP
2. Mouse Click into the left LineEditB
3. Type Keyboard => No letters appear in the LineEditB

Variant:

1. Load and run MRP
2. Mouse Click into the right LineEditA
3. Mouse Click into the left LineEditB
4. Type Keyboard => Letters appear in LineEditA instead of LineEditB


### Minimal reproduction project

[BugKeyInputRouting.zip](https://github.com/godotengine/godot/files/11994804/BugKeyInputRouting.zip)

ERR_READ_THREAD_GUARD_V(Transform2D());
	Transform2D container_transform;
	SubViewportContainer *c = Object::cast_to<SubViewportContainer>(get_parent());
	if (c) {
		if (c->is_stretch_enabled()) {
			container_transform.scale(Vector2(c->get_stretch_shrink(), c->get_stretch_shrink()));
		}
		container_transform = c->get_viewport()->get_screen_transform_internal(p_absolute_position) * c->get_global_transform_with_canvas() * container_transform;
	} else {
		WARN_PRINT_ONCE("SubViewport is not a child of a SubViewportContainer. get_screen_transform doesn't return the actual screen position.");
	}
	return container_transform * get_final_transform();
}
Transform2D SubViewport::get_popup_base_transform() const {
	ERR_READ_THREAD_GUARD_V(Transform2D());
	if (is_embedding_subwindows()) {
		return Transform2D();
	}
	SubViewportContainer *c = Object::cast_to<SubViewportContainer>(get_parent());
	if (!c) {
		return get_final_transform();
	}
	Transform2D container_transform;
	if (c->is_stretch_enabled()) {
		container_transform.scale(Vector2(c->get_stretch_shrink(), c->get_stretch_shrink()));
	}
	return c->get_screen_transform() * container_transform * get_final_transform();
}
bool SubViewport::is_directly_attached_to_screen() const {