### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Ref<ResourceImporterBMFont> import_font_data_bmfont;
		import_font_data_bmfont.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_font_data_bmfont);
		Ref<ResourceImporterImageFont> import_font_data_image;
		import_font_data_image.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_font_data_image);
		Ref<ResourceImporterCSVTranslation> import_csv_translation;
		import_csv_translation.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_csv_translation);
		Ref<ResourceImporterWAV> import_wav;
		import_wav.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_wav);
		Ref<ResourceImporterOBJ> import_obj;
		import_obj.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_obj);
		Ref<ResourceImporterShaderFile> import_shader_file;
		import_shader_file.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_shader_file);
		Ref<ResourceImporterScene> import_scene;
		import_scene.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_scene);
		Ref<ResourceImporterScene> import_animation;
		import_animation = Ref<ResourceImporterScene>(memnew(ResourceImporterScene(true)));
		ResourceFormatImporter::get_singleton()->add_importer(import_animation);
		{
			Ref<EditorSceneFormatImporterCollada> import_collada;
			import_collada.instantiate();
			ResourceImporterScene::add_importer(import_collada);
			Ref<EditorOBJImporter> import_obj2;
			import_obj2.instantiate();