### Godot version

Godot 4.1-beta2

### System information

Manjaro Gnome, Intel Core i7-11800H

### Issue description

On a relatively modern laptop (Intel Core i7-11800H), in a scene with many scripted nodes (total of 900+ with roughly half of them scripted), adding or duplicating a node freezes the editor for several seconds. Godot 4.0.2 handles such scenes much better!

Here is a flame graph captured while repeatedly duplicating simple Marker2D nodes with Ctrl+D in a complicated scene:
![Screenshot from 2023-06-15 23-54-38](https://github.com/godotengine/godot/assets/2766569/d0019f17-9b82-4a26-9b47-71fa7a3bef3a)

Performance data file to use with hotspot v1.4.1 (relevant data starts at the 75-second mark and lasts about 20+ seconds):
[perf.data.perfparser.zip](https://github.com/godotengine/godot/files/11763700/perf.data.perfparser.zip)



### Steps to reproduce

1) Add 1000 nodes with a script attached.
2) Duplicate a node and witness lags.

Also affects scrolling the scene tree dock.

### Minimal reproduction project

[add_node_lags_repro.zip](https://github.com/godotengine/godot/files/11763731/add_node_lags_repro.zip)

window->set_theme(theme);
			}
			OS::get_singleton()->set_low_processor_usage_mode_sleep_usec(int(EDITOR_GET("interface/editor/low_processor_mode_sleep_usec")));
			get_tree()->get_root()->set_as_audio_listener_3d(false);
			get_tree()->get_root()->set_as_audio_listener_2d(false);
			get_tree()->get_root()->set_snap_2d_transforms_to_pixel(false);
			get_tree()->get_root()->set_snap_2d_vertices_to_pixel(false);
			get_tree()->set_auto_accept_quit(false);
#ifdef ANDROID_ENABLED
			get_tree()->set_quit_on_go_back(false);
#endif
			get_tree()->get_root()->connect("files_dropped", callable_mp(this, &EditorNode::_dropped_files));
			command_palette->register_shortcuts_as_command();
			MessageQueue::get_singleton()->push_callable(callable_mp(this, &EditorNode::_begin_first_scan));
			
		} break;
		case NOTIFICATION_EXIT_TREE: {
			if (progress_dialog) {
				progress_dialog->queue_free();
			}
			if (load_error_dialog) {
				load_error_dialog->queue_free();
			}
			if (execute_output_dialog) {
				execute_output_dialog->queue_free();
			}
			if (warning) {
				warning->queue_free();
			}
			if (accept) {