### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
file_export_lib->get_vbox()->add_child(file_export_lib_apply_xforms);
	gui_base->add_child(file_export_lib);
	file_script = memnew(EditorFileDialog);
	file_script->set_title(TTR("Open & Run a Script"));
	file_script->set_access(EditorFileDialog::ACCESS_FILESYSTEM);
	file_script->set_file_mode(EditorFileDialog::FILE_MODE_OPEN_FILE);
	List<String> sexts;
	ResourceLoader::get_recognized_extensions_for_type("Script", &sexts);
	for (const String &E : sexts) {
		file_script->add_filter("*." + E);
	}
	gui_base->add_child(file_script);
	file_script->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	file_menu->connect("id_pressed", callable_mp(this, &EditorNode::_menu_option));
	file_menu->connect("about_to_popup", callable_mp(this, &EditorNode::_update_file_menu_opened));
	file_menu->connect("popup_hide", callable_mp(this, &EditorNode::_update_file_menu_closed));
	settings_menu->connect("id_pressed", callable_mp(this, &EditorNode::_menu_option));
	file->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	file_templates->connect("file_selected", callable_mp(this, &EditorNode::_dialog_action));
	audio_preview_gen = memnew(AudioStreamPreviewGenerator);
	add_child(audio_preview_gen);
	add_editor_plugin(memnew(DebuggerEditorPlugin(debug_menu)));
	disk_changed = memnew(ConfirmationDialog);
	{
		VBoxContainer *vbc = memnew(VBoxContainer);
		disk_changed->add_child(vbc);
		Label *dl = memnew(Label);
		dl->set_text(TTR("The following files are newer on disk.\nWhat action should be taken?"));
		vbc->add_child(dl);
		disk_changed_list = memnew(Tree);