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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

0,
			nullptr,
			0, 
			Z_DEFAULT_COMPRESSION);
	zipWriteInFileInZip(unaligned_apk, command_line_flags.ptr(), command_line_flags.size());
	zipCloseFileInZip(unaligned_apk);
	zipClose(unaligned_apk, nullptr);
	unzClose(pkg);
	if (err != OK) {
		CLEANUP_AND_RETURN(err);
	}
	
	static const int ZIP_ALIGNMENT = 4;
	
	const int next_step = should_sign ? 103 : 105;
	if (ep.step(TTR("Aligning APK..."), next_step)) {
		CLEANUP_AND_RETURN(ERR_SKIP);
	}
	unzFile tmp_unaligned = unzOpen2(tmp_unaligned_path.utf8().get_data(), &io);
	if (!tmp_unaligned) {
		add_message(EXPORT_MESSAGE_ERROR, TTR("Export"), vformat(TTR("Could not unzip temporary unaligned APK.")));
		CLEANUP_AND_RETURN(ERR_FILE_NOT_FOUND);
	}
	ret = unzGoToFirstFile(tmp_unaligned);
	io2 = zipio_create_io(&io2_fa);
	zipFile final_apk = zipOpen2(p_path.utf8().get_data(), APPEND_STATUS_CREATE, nullptr, &io2);
	
	
	
	int bias = 0;