### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
String current_renderer = GLOBAL_GET("rendering/renderer/rendering_method");
	PackedStringArray renderers = ProjectSettings::get_singleton()->get_custom_property_info().get(StringName("rendering/renderer/rendering_method")).hint_string.split(",", false);
	
	
	current_renderer = current_renderer.to_lower();
	for (int i = 0; i < renderers.size(); i++) {
		String rendering_method = renderers[i];
		
		if (rendering_method == "forward_plus") {
			renderer->add_item(TTR("Forward+"));
		}
		if (rendering_method == "mobile") {
			renderer->add_item(TTR("Mobile"));
		}
		if (rendering_method == "gl_compatibility") {
			renderer->add_item(TTR("Compatibility"));
		}
		renderer->set_item_metadata(i, rendering_method);
		
		rendering_method = rendering_method.to_lower();
		if (current_renderer == rendering_method) {
			renderer->select(i);
			renderer_current = i;
		}
	}
	_update_renderer_color();
	video_restart_dialog = memnew(ConfirmationDialog);
	video_restart_dialog->set_text(TTR("Changing the renderer requires restarting the editor."));
	video_restart_dialog->set_ok_button_text(TTR("Save & Restart"));
	video_restart_dialog->connect("confirmed", callable_mp(this, &EditorNode::_menu_option).bind(SET_RENDERER_NAME_SAVE_AND_RESTART));