### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
save_all_scenes();
	ProjectSettings::get_singleton()->save();
	disk_changed->hide();
}
void EditorNode::_reload_modified_scenes() {
	int current_idx = editor_data.get_edited_scene();
	for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
		if (editor_data.get_scene_path(i) == "") {
			continue;
		}
		uint64_t last_date = editor_data.get_scene_modified_time(i);
		uint64_t date = FileAccess::get_modified_time(editor_data.get_scene_path(i));
		if (date > last_date) {
			String filename = editor_data.get_scene_path(i);
			editor_data.set_edited_scene(i);
			_remove_edited_scene(false);
			Error err = load_scene(filename, false, false, true, false, true);
			if (err != OK) {
				ERR_PRINT(vformat("Failed to load scene: %s", filename));
			}
			editor_data.move_edited_scene_to_index(i);
		}
	}
	set_current_scene(current_idx);
	_update_scene_tabs();
	disk_changed->hide();
}
void EditorNode::_reload_project_settings() {