### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
scene_tabs->set_current_tab(cur_idx);
		} break;
		case FILE_SHOW_IN_FILESYSTEM: {
			String path = editor_data.get_scene_path(editor_data.get_edited_scene());
			if (!path.is_empty()) {
				FileSystemDock::get_singleton()->navigate_to_path(path);
			}
		} break;
		case RUN_SETTINGS: {
			project_settings_editor->popup_project_settings();
		} break;
		case FILE_INSTALL_ANDROID_SOURCE: {
			if (p_confirmed) {
				export_template_manager->install_android_template();
			} else {
				if (DirAccess::exists("res:android/build")) {
					remove_android_build_template->popup_centered();
				} else if (export_template_manager->can_install_android_template()) {
					install_android_build_template->popup_centered();
				} else {
					gradle_build_manage_templates->popup_centered();
				}
			}
		} break;
		case TOOLS_BUILD_PROFILE_MANAGER: {
			build_profile_manager->popup_centered_clamped(Size2(700, 800) * EDSCALE, 0.8);
		} break;
		case RUN_USER_DATA_FOLDER: {
			
			OS::get_singleton()->ensure_user_data_dir();