### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
resource_conversion_plugins.push_back(orm_mat_convert);
		Ref<CanvasItemMaterialConversionPlugin> canvas_item_mat_convert;
		canvas_item_mat_convert.instantiate();
		resource_conversion_plugins.push_back(canvas_item_mat_convert);
		Ref<ParticleProcessMaterialConversionPlugin> particles_mat_convert;
		particles_mat_convert.instantiate();
		resource_conversion_plugins.push_back(particles_mat_convert);
		Ref<ProceduralSkyMaterialConversionPlugin> procedural_sky_mat_convert;
		procedural_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(procedural_sky_mat_convert);
		Ref<PanoramaSkyMaterialConversionPlugin> panorama_sky_mat_convert;
		panorama_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(panorama_sky_mat_convert);
		Ref<PhysicalSkyMaterialConversionPlugin> physical_sky_mat_convert;
		physical_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(physical_sky_mat_convert);
		Ref<FogMaterialConversionPlugin> fog_mat_convert;
		fog_mat_convert.instantiate();
		resource_conversion_plugins.push_back(fog_mat_convert);
		Ref<VisualShaderConversionPlugin> vshader_convert;
		vshader_convert.instantiate();
		resource_conversion_plugins.push_back(vshader_convert);
	}
	update_spinner_step_msec = OS::get_singleton()->get_ticks_msec();
	update_spinner_step_frame = Engine::get_singleton()->get_frames_drawn();
	editor_plugin_screen = nullptr;
	editor_plugins_over = memnew(EditorPluginList);
	editor_plugins_force_over = memnew(EditorPluginList);
	editor_plugins_force_input_forwarding = memnew(EditorPluginList);
	Ref<GDExtensionExportPlugin> gdextension_export_plugin;