### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
} else {
				singleton->main_editor_buttons[i]->disconnect("pressed", callable_mp(singleton, &EditorNode::editor_select));
				singleton->main_editor_buttons[i]->connect("pressed", callable_mp(singleton, &EditorNode::editor_select).bind(i - 1));
			}
		}
		singleton->editor_table.erase(p_editor);
	}
	p_editor->make_visible(false);
	p_editor->clear();
	if (p_config_changed) {
		p_editor->disable_plugin();
	}
	singleton->editor_plugins_over->remove_plugin(p_editor);
	singleton->editor_plugins_force_over->remove_plugin(p_editor);
	singleton->editor_plugins_force_input_forwarding->remove_plugin(p_editor);
	singleton->remove_child(p_editor);
	singleton->editor_data.remove_editor_plugin(p_editor);
	for (KeyValue<ObjectID, HashSet<EditorPlugin *>> &kv : singleton->active_plugins) {
		kv.value.erase(p_editor);
	}
}
void EditorNode::add_extension_editor_plugin(const StringName &p_class_name) {
	ERR_FAIL_COND_MSG(!ClassDB::class_exists(p_class_name), vformat("No such editor plugin registered: %s", p_class_name));
	ERR_FAIL_COND_MSG(!ClassDB::is_parent_class(p_class_name, SNAME("EditorPlugin")), vformat("Class is not an editor plugin: %s", p_class_name));
	ERR_FAIL_COND_MSG(singleton->editor_data.has_extension_editor_plugin(p_class_name), vformat("Editor plugin already added for class: %s", p_class_name));
	EditorPlugin *plugin = Object::cast_to<EditorPlugin>(ClassDB::instantiate(p_class_name));
	singleton->editor_data.add_extension_editor_plugin(p_class_name, plugin);
	add_editor_plugin(plugin);
}
void EditorNode::remove_extension_editor_plugin(const StringName &p_class_name) {