### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
WindowWrapper *wrapper = Object::cast_to<WindowWrapper>(p_dock);
	if (!wrapper) {
		_dock_make_float(p_dock, p_slot_index, false);
		wrapper = floating_docks[floating_docks.size() - 1];
	}
	wrapper->restore_window_from_saved_position(
			p_dock_dump.get("window_rect", Rect2i()),
			p_dock_dump.get("window_screen", -1),
			p_dock_dump.get("window_screen_rect", Rect2i()));
}
void EditorNode::_load_docks_from_config(Ref<ConfigFile> p_layout, const String &p_section) {
	Dictionary floating_docks_dump = p_layout->get_value(p_section, "dock_floating", Dictionary());
	bool restore_window_on_load = EDITOR_GET("interface/multi_window/restore_windows_on_load");
	for (int i = 0; i < DOCK_SLOT_MAX; i++) {
		if (!p_layout->has_section_key(p_section, "dock_" + itos(i + 1))) {
			continue;
		}
		Vector<String> names = String(p_layout->get_value(p_section, "dock_" + itos(i + 1))).split(",");
		for (int j = names.size() - 1; j >= 0; j--) {
			String name = names[j];
			
			int atidx = -1;
			Control *node = nullptr;
			for (int k = 0; k < DOCK_SLOT_MAX; k++) {
				if (!dock_slot[k]->has_node(name)) {
					continue;
				}
				node = Object::cast_to<Control>(dock_slot[k]->get_node(name));
				if (!node) {
					continue;