### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
HashMap<StringName, Variant> modified_properties = get_modified_properties_for_node(p_node);
		
		List<Connection> connections_to;
		p_node->get_all_signal_connections(&connections_to);
		List<ConnectionWithNodePath> valid_connections_to;
		for (const Connection &c : connections_to) {
			Node *connection_target_node = Object::cast_to<Node>(c.callable.get_object());
			if (connection_target_node) {
				
				if (!c.callable.is_custom()) {
					ConnectionWithNodePath connection_to;
					connection_to.connection = c;
					connection_to.node_path = p_node->get_path_to(connection_target_node);
					valid_connections_to.push_back(connection_to);
				}
			}
		}
		
		List<Connection> connections_from;
		p_node->get_signals_connected_to_this(&connections_from);
		List<Connection> valid_connections_from;
		for (const Connection &c : connections_from) {
			Node *source_node = Object::cast_to<Node>(c.signal.get_object());
			Node *valid_source_owner = nullptr;
			if (source_node) {
				valid_source_owner = source_node->get_owner();
				while (valid_source_owner) {
					if (valid_source_owner == p_root) {
						break;
					}