### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

if (viewport_under) {
				if (viewport_under != this) {
					Transform2D ai = viewport_under->get_final_transform().affine_inverse();
					viewport_pos = ai.xform(viewport_pos);
				}
				
				gui.drag_mouse_over = viewport_under->gui_find_control(viewport_pos);
				if (gui.drag_mouse_over) {
					Transform2D localizer = gui.drag_mouse_over->get_global_transform_with_canvas().affine_inverse();
					gui.drag_mouse_over_pos = localizer.xform(viewport_pos);
					bool can_drop = _gui_drop(gui.drag_mouse_over, gui.drag_mouse_over_pos, true);
					if (!can_drop) {
						ds_cursor_shape = DisplayServer::CURSOR_FORBIDDEN;
					} else {
						ds_cursor_shape = DisplayServer::CURSOR_CAN_DROP;
					}
				}
			} else {
				gui.drag_mouse_over = nullptr;
			}
		}
		if (DisplayServer::get_singleton()->has_feature(DisplayServer::FEATURE_CURSOR_SHAPE)) {
			DisplayServer::get_singleton()->cursor_set_shape(ds_cursor_shape);
		}
	}
	Ref<InputEventScreenTouch> touch_event = p_event;
	if (touch_event.is_valid()) {
		Size2 pos = touch_event->get_position();
		const int touch_index = touch_event->get_index();
		if (touch_event->is_pressed()) {