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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

}
	if (!exported) {
		ERR_PRINT("Cannot determine architecture for library \"" + p_so.path + "\". One of the supported architectures must be used as a tag: " + join_abis(abis, " ", true));
		return FAILED;
	}
	return OK;
}
Error EditorExportPlatformAndroid::save_apk_file(void *p_userdata, const String &p_path, const Vector<uint8_t> &p_data, int p_file, int p_total, const Vector<String> &p_enc_in_filters, const Vector<String> &p_enc_ex_filters, const Vector<uint8_t> &p_key) {
	APKExportData *ed = static_cast<APKExportData *>(p_userdata);
	String dst_path = p_path.replace_first("res://", "assets/");
	store_in_apk(ed, dst_path, p_data, _should_compress_asset(p_path, p_data) ? Z_DEFLATED : 0);
	return OK;
}
Error EditorExportPlatformAndroid::ignore_apk_file(void *p_userdata, const String &p_path, const Vector<uint8_t> &p_data, int p_file, int p_total, const Vector<String> &p_enc_in_filters, const Vector<String> &p_enc_ex_filters, const Vector<uint8_t> &p_key) {
	return OK;
}
Error EditorExportPlatformAndroid::copy_gradle_so(void *p_userdata, const SharedObject &p_so) {
	ERR_FAIL_COND_V_MSG(!p_so.path.get_file().begins_with("lib"), FAILED,
			"Android .so file names must start with \"lib\", but got: " + p_so.path);
	Vector<ABI> abis = get_abis();
	CustomExportData *export_data = static_cast<CustomExportData *>(p_userdata);
	bool exported = false;
	for (int i = 0; i < p_so.tags.size(); ++i) {
		int abi_index = -1;
		for (int j = 0; j < abis.size(); ++j) {
			if (abis[j].abi == p_so.tags[i] || abis[j].arch == p_so.tags[i]) {
				abi_index = j;
				break;
			}
		}