### Godot version

4.1.beta (7b1387ff2)

### System information

Mageia 9, Linux

### Issue description

When opening an empty project in latest `master`, I get these errors:
```
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: get_scene_path (editor/scu/../editor_data.cpp:880)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: check_and_update_scene (editor/scu/../editor_data.cpp:683)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: set_edited_scene (editor/scu/../editor_data.cpp:745)
```

Possibly related to recent changes to restore past sessions, but there's nothing to restore in this case?

### Steps to reproduce

- Create a new project, edit it
- Quit to project manager
- Re-open the newly created project -> errors

### Minimal reproduction project

Empty project.
List<String> property_names;
						for (const PropertyInfo &E2 : pinfo) {
							if (E2.usage & PROPERTY_USAGE_STORAGE) {
								property_names.push_back(E2.name);
							}
						}
						
						for (const KeyValue<StringName, Variant> &E2 : E.value.property_table) {
							if (property_names.find(E2.key)) {
								modifiable_node->set(E2.key, E2.value);
							}
						}
						
						for (const ConnectionWithNodePath &E2 : E.value.connections_to) {
							Connection conn = E2.connection;
							
							Node *target_node = cast_to<Node>(conn.callable.get_object());
							
							
							
							if (!target_node || !target_node->is_queued_for_deletion()) {
								target_node = modifiable_node->get_node_or_null(E2.node_path);
							}
							if (target_node) {
								
								Callable new_callable = Callable(target_node, conn.callable.get_method());
								if (!modifiable_node->is_connected(conn.signal.get_name(), new_callable)) {
									ERR_FAIL_COND(modifiable_node->connect(conn.signal.get_name(), new_callable, conn.flags) != OK);
								}
							}