### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
_find_and_save_edited_subresources(scene, processed, flags);
	for (int i = 0; i < scene->get_child_count(); i++) {
		Node *n = scene->get_child(i);
		if (n->get_owner() != editor_data.get_edited_scene_root()) {
			continue;
		}
		_save_edited_subresources(n, processed, flags);
	}
}
void EditorNode::_find_node_types(Node *p_node, int &count_2d, int &count_3d) {
	if (p_node->is_class("Viewport") || (p_node != editor_data.get_edited_scene_root() && p_node->get_owner() != editor_data.get_edited_scene_root())) {
		return;
	}
	if (p_node->is_class("CanvasItem")) {
		count_2d++;
	} else if (p_node->is_class("Node3D")) {
		count_3d++;
	}
	for (int i = 0; i < p_node->get_child_count(); i++) {
		_find_node_types(p_node->get_child(i), count_2d, count_3d);
	}
}
void EditorNode::_save_scene_with_preview(String p_file, int p_idx) {