### Godot version

Godot 4.1-beta2

### System information

Manjaro Gnome, Intel Core i7-11800H

### Issue description

On a relatively modern laptop (Intel Core i7-11800H), in a scene with many scripted nodes (total of 900+ with roughly half of them scripted), adding or duplicating a node freezes the editor for several seconds. Godot 4.0.2 handles such scenes much better!

Here is a flame graph captured while repeatedly duplicating simple Marker2D nodes with Ctrl+D in a complicated scene:
![Screenshot from 2023-06-15 23-54-38](https://github.com/godotengine/godot/assets/2766569/d0019f17-9b82-4a26-9b47-71fa7a3bef3a)

Performance data file to use with hotspot v1.4.1 (relevant data starts at the 75-second mark and lasts about 20+ seconds):
[perf.data.perfparser.zip](https://github.com/godotengine/godot/files/11763700/perf.data.perfparser.zip)



### Steps to reproduce

1) Add 1000 nodes with a script attached.
2) Duplicate a node and witness lags.

Also affects scrolling the scene tree dock.

### Minimal reproduction project

[add_node_lags_repro.zip](https://github.com/godotengine/godot/files/11763731/add_node_lags_repro.zip)

}
	singleton->editor_plugins_over->remove_plugin(p_editor);
	singleton->editor_plugins_force_over->remove_plugin(p_editor);
	singleton->editor_plugins_force_input_forwarding->remove_plugin(p_editor);
	singleton->remove_child(p_editor);
	singleton->editor_data.remove_editor_plugin(p_editor);
	for (KeyValue<ObjectID, HashSet<EditorPlugin *>> &kv : singleton->active_plugins) {
		kv.value.erase(p_editor);
	}
}
void EditorNode::add_extension_editor_plugin(const StringName &p_class_name) {
	ERR_FAIL_COND_MSG(!ClassDB::class_exists(p_class_name), vformat("No such editor plugin registered: %s", p_class_name));
	ERR_FAIL_COND_MSG(!ClassDB::is_parent_class(p_class_name, SNAME("EditorPlugin")), vformat("Class is not an editor plugin: %s", p_class_name));
	ERR_FAIL_COND_MSG(singleton->editor_data.has_extension_editor_plugin(p_class_name), vformat("Editor plugin already added for class: %s", p_class_name));
	EditorPlugin *plugin = Object::cast_to<EditorPlugin>(ClassDB::instantiate(p_class_name));
	singleton->editor_data.add_extension_editor_plugin(p_class_name, plugin);
	add_editor_plugin(plugin);
}
void EditorNode::remove_extension_editor_plugin(const StringName &p_class_name) {
	
	if (singleton->exiting) {
		return;
	}
	ERR_FAIL_COND_MSG(!singleton->editor_data.has_extension_editor_plugin(p_class_name), vformat("No editor plugin added for class: %s", p_class_name));
	EditorPlugin *plugin = singleton->editor_data.get_extension_editor_plugin(p_class_name);
	remove_editor_plugin(plugin);
	memfree(plugin);
	singleton->editor_data.remove_extension_editor_plugin(p_class_name);
}
void EditorNode::_update_addon_config() {