### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
main_menu->set_start_index(0); 
	main_menu->set_prefer_global_menu(global_menu);
	main_menu->set_switch_on_hover(true);
	file_menu = memnew(PopupMenu);
	file_menu->set_name(TTR("Scene"));
	main_menu->add_child(file_menu);
	main_menu->set_menu_tooltip(0, TTR("Operations with scene files."));
	prev_scene = memnew(Button);
	prev_scene->set_flat(true);
	prev_scene->set_icon(gui_base->get_theme_icon(SNAME("PrevScene"), SNAME("EditorIcons")));
	prev_scene->set_tooltip_text(TTR("Go to previously opened scene."));
	prev_scene->set_disabled(true);
	prev_scene->connect("pressed", callable_mp(this, &EditorNode::_menu_option).bind(FILE_OPEN_PREV));
	gui_base->add_child(prev_scene);
	prev_scene->set_position(Point2(3, 24));
	prev_scene->hide();
	accept = memnew(AcceptDialog);
	accept->set_unparent_when_invisible(true);
	save_accept = memnew(AcceptDialog);
	save_accept->set_unparent_when_invisible(true);
	save_accept->connect("confirmed", callable_mp(this, &EditorNode::_menu_option).bind((int)MenuOptions::FILE_SAVE_AS_SCENE));
	project_export = memnew(ProjectExportDialog);
	gui_base->add_child(project_export);
	dependency_error = memnew(DependencyErrorDialog);
	gui_base->add_child(dependency_error);
	dependency_fixer = memnew(DependencyEditor);
	gui_base->add_child(dependency_fixer);
	editor_settings_dialog = memnew(EditorSettingsDialog);
	gui_base->add_child(editor_settings_dialog);
	project_settings_editor = memnew(ProjectSettingsEditor(&editor_data));