### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
for (int i = 0; i < hsplits.size(); i++) {
		p_layout->set_value(p_section, "dock_hsplit_" + itos(i + 1), hsplits[i]->get_split_offset());
	}
	
	p_layout->set_value(p_section, "dock_filesystem_split", FileSystemDock::get_singleton()->get_split_offset());
	p_layout->set_value(p_section, "dock_filesystem_display_mode", FileSystemDock::get_singleton()->get_display_mode());
	p_layout->set_value(p_section, "dock_filesystem_file_sort", FileSystemDock::get_singleton()->get_file_sort());
	p_layout->set_value(p_section, "dock_filesystem_file_list_display_mode", FileSystemDock::get_singleton()->get_file_list_display_mode());
	PackedStringArray selected_files = FileSystemDock::get_singleton()->get_selected_paths();
	p_layout->set_value(p_section, "dock_filesystem_selected_paths", selected_files);
	Vector<String> uncollapsed_paths = FileSystemDock::get_singleton()->get_uncollapsed_paths();
	p_layout->set_value(p_section, "dock_filesystem_uncollapsed_paths", uncollapsed_paths);
}
void EditorNode::_save_open_scenes_to_config(Ref<ConfigFile> p_layout) {
	PackedStringArray scenes;
	for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
		String path = editor_data.get_scene_path(i);
		if (path.is_empty()) {
			continue;
		}
		scenes.push_back(path);
	}
	p_layout->set_value(EDITOR_NODE_CONFIG_SECTION, "open_scenes", scenes);
	String currently_edited_scene_path = editor_data.get_scene_path(editor_data.get_edited_scene());
	
	if (!currently_edited_scene_path.is_empty()) {
		p_layout->set_value(EDITOR_NODE_CONFIG_SECTION, "current_scene", currently_edited_scene_path);
	}
}
void EditorNode::save_editor_layout_delayed() {