### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
unsaved_scenes += "\n            " + editor_data.get_edited_scene_root(i)->get_scene_file_path();
						i = _next_unsaved_scene(true, ++i);
					}
					if (p_option == RELOAD_CURRENT_PROJECT) {
						save_confirmation->set_ok_button_text(TTR("Save & Reload"));
						save_confirmation->set_text(TTR("Save changes to the following scene(s) before reloading?") + unsaved_scenes);
					} else {
						save_confirmation->set_ok_button_text(TTR("Save & Quit"));
						save_confirmation->set_text((p_option == FILE_QUIT ? TTR("Save changes to the following scene(s) before quitting?") : TTR("Save changes to the following scene(s) before opening Project Manager?")) + unsaved_scenes);
					}
					save_confirmation->reset_size();
					save_confirmation->popup_centered();
				}
				DisplayServer::get_singleton()->window_request_attention();
				break;
			}
			_save_external_resources();
			_discard_changes();
		} break;
		case SETTINGS_UPDATE_CONTINUOUSLY: {
			EditorSettings::get_singleton()->set("interface/editor/update_continuously", true);
			_update_update_spinner();
			show_accept(TTR("This option is deprecated. Situations where refresh must be forced are now considered a bug. Please report."), TTR("OK"));
		} break;
		case SETTINGS_UPDATE_WHEN_CHANGED: {
			EditorSettings::get_singleton()->set("interface/editor/update_continuously", false);
			_update_update_spinner();
		} break;
		case SETTINGS_UPDATE_SPINNER_HIDE: {
			EditorSettings::get_singleton()->set("interface/editor/show_update_spinner", false);