### Godot version

v4.0.2.stable.official [7a0977c]

### System information

Window 10

### Issue description

If your project is set to `WINDOW_MODE_FULLSCREEN` in project settings, the first time you try to switch mode for `WINDOWED`, it will not switch properly.


### Steps to reproduce

1. Create a new project
2. Change project settings `Display > Window > Mode` for `FullScreen`
3. Run the following code :

Code that reproduce the issue:
```
func _ready():
	DisplayServer.window_set_mode(DisplayServer.WINDOW_MODE_WINDOWED)
	DisplayServer.window_set_size(Vector2i(800,600))
``` 

## Workaround
Calling the `window_set_mode` twice solve the issue...

```
func _ready():
	DisplayServer.window_set_mode(DisplayServer.WINDOW_MODE_WINDOWED)
	DisplayServer.window_set_mode(DisplayServer.WINDOW_MODE_WINDOWED)
	DisplayServer.window_set_size(Vector2i(800,600))
``` 


### Minimal reproduction project

N/A: reproduction steps are trivial
if (windows[window_id].mpass) {
				return HTTRANSPARENT;
			}
		} break;
		case WM_MOUSEACTIVATE: {
			if (windows[window_id].no_focus) {
				return MA_NOACTIVATEANDEAT; 
			} else if (windows[window_id].is_popup) {
				return MA_NOACTIVATE; 
			}
		} break;
		case WM_SETFOCUS: {
			windows[window_id].window_has_focus = true;
			last_focused_window = window_id;
			
			_set_mouse_mode_impl(mouse_mode);
			if (!app_focused) {
				if (OS::get_singleton()->get_main_loop()) {
					OS::get_singleton()->get_main_loop()->notification(MainLoop::NOTIFICATION_APPLICATION_FOCUS_IN);
				}
				app_focused = true;
			}
		} break;
		case WM_KILLFOCUS: {
			windows[window_id].window_has_focus = false;
			last_focused_window = window_id;
			
			ReleaseCapture();
			
			for (const KeyValue<int, Vector2> &E : touch_state) {