### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (p_editor->has_main_screen()) {
		
		
		for (int i = singleton->main_editor_buttons.size() - 1; i >= 0; i--) {
			if (p_editor->get_name() == singleton->main_editor_buttons[i]->get_text()) {
				if (singleton->main_editor_buttons[i]->is_pressed()) {
					singleton->editor_select(EDITOR_SCRIPT);
				}
				memdelete(singleton->main_editor_buttons[i]);
				singleton->main_editor_buttons.remove_at(i);
				break;
			} else {
				singleton->main_editor_buttons[i]->disconnect("pressed", callable_mp(singleton, &EditorNode::editor_select));
				singleton->main_editor_buttons[i]->connect("pressed", callable_mp(singleton, &EditorNode::editor_select).bind(i - 1));
			}
		}
		singleton->editor_table.erase(p_editor);
	}
	p_editor->make_visible(false);
	p_editor->clear();
	if (p_config_changed) {
		p_editor->disable_plugin();