### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
return true;
				}
			}
		}
	} else {
		
		if (FileAccess::exists(path + ".import")) {
			return true;
		}
	}
	return false;
}
void EditorNode::request_instantiate_scene(const String &p_path) {
	SceneTreeDock::get_singleton()->instantiate(p_path);
}
void EditorNode::request_instantiate_scenes(const Vector<String> &p_files) {
	SceneTreeDock::get_singleton()->instantiate_scenes(p_files);
}
void EditorNode::_inherit_request(String p_file) {
	current_menu_option = FILE_NEW_INHERITED_SCENE;
	_dialog_action(p_file);
}
void EditorNode::_instantiate_request(const Vector<String> &p_files) {
	request_instantiate_scenes(p_files);
}
void EditorNode::_close_messages() {
	old_split_ofs = center_split->get_split_offset();
	center_split->set_split_offset(0);
}
void EditorNode::_show_messages() {