### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
if (!scene_path.is_empty()) {
						required_load_paths.push_front(scene_path);
					}
					Ref<SceneState> inherited_state = original_node->get_scene_inherited_state();
					while (inherited_state.is_valid()) {
						String inherited_path = inherited_state->get_path();
						
						if (!inherited_path.is_empty()) {
							required_load_paths.push_front(inherited_path);
						}
						inherited_state = inherited_state->get_base_scene_state();
					}
					
					
					for (String path : required_load_paths) {
						if (!local_scene_cache.find(path)) {
							current_packed_scene = ResourceLoader::load(path, "", ResourceFormatLoader::CACHE_MODE_IGNORE, &err);
							current_packed_scene->set_path(path, true);
							local_scene_cache[path] = current_packed_scene;
						} else {
							current_packed_scene = local_scene_cache[path];
						}
					}
				}
				ERR_FAIL_COND(current_packed_scene.is_null());
				
				Node *instantiated_node = nullptr;
				if (current_packed_scene.is_valid()) {
					instantiated_node = current_packed_scene->instantiate(PackedScene::GEN_EDIT_STATE_INSTANCE);
				}