### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
Ref<ResourceImporterBMFont> import_font_data_bmfont;
		import_font_data_bmfont.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_font_data_bmfont);
		Ref<ResourceImporterImageFont> import_font_data_image;
		import_font_data_image.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_font_data_image);
		Ref<ResourceImporterCSVTranslation> import_csv_translation;
		import_csv_translation.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_csv_translation);
		Ref<ResourceImporterWAV> import_wav;
		import_wav.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_wav);
		Ref<ResourceImporterOBJ> import_obj;
		import_obj.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_obj);
		Ref<ResourceImporterShaderFile> import_shader_file;
		import_shader_file.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_shader_file);
		Ref<ResourceImporterScene> import_scene;
		import_scene.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_scene);
		Ref<ResourceImporterScene> import_animation;
		import_animation = Ref<ResourceImporterScene>(memnew(ResourceImporterScene(true)));
		ResourceFormatImporter::get_singleton()->add_importer(import_animation);
		{
			Ref<EditorSceneFormatImporterCollada> import_collada;
			import_collada.instantiate();
			ResourceImporterScene::add_importer(import_collada);
			Ref<EditorOBJImporter> import_obj2;
			import_obj2.instantiate();