### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
save_all_scenes();
	ProjectSettings::get_singleton()->save();
	disk_changed->hide();
}
void EditorNode::_reload_modified_scenes() {
	int current_idx = editor_data.get_edited_scene();
	for (int i = 0; i < editor_data.get_edited_scene_count(); i++) {
		if (editor_data.get_scene_path(i) == "") {
			continue;
		}
		uint64_t last_date = editor_data.get_scene_modified_time(i);
		uint64_t date = FileAccess::get_modified_time(editor_data.get_scene_path(i));
		if (date > last_date) {
			String filename = editor_data.get_scene_path(i);
			editor_data.set_edited_scene(i);
			_remove_edited_scene(false);
			Error err = load_scene(filename, false, false, true, false, true);
			if (err != OK) {
				ERR_PRINT(vformat("Failed to load scene: %s", filename));
			}
			editor_data.move_edited_scene_to_index(i);
		}
	}
	set_current_scene(current_idx);
	_update_scene_tabs();
	disk_changed->hide();
}
void EditorNode::_reload_project_settings() {