### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_READ_THREAD_GUARD_V(MSAA_DISABLED);
	return msaa_2d;
}
void Viewport::set_msaa_3d(MSAA p_msaa) {
	ERR_MAIN_THREAD_GUARD;
	ERR_FAIL_INDEX(p_msaa, MSAA_MAX);
	if (msaa_3d == p_msaa) {
		return;
	}
	msaa_3d = p_msaa;
	RS::get_singleton()->viewport_set_msaa_3d(viewport, RS::ViewportMSAA(p_msaa));
}
Viewport::MSAA Viewport::get_msaa_3d() const {
	ERR_READ_THREAD_GUARD_V(MSAA_DISABLED);
	return msaa_3d;
}
void Viewport::set_screen_space_aa(ScreenSpaceAA p_screen_space_aa) {
	ERR_MAIN_THREAD_GUARD;
	ERR_FAIL_INDEX(p_screen_space_aa, SCREEN_SPACE_AA_MAX);
	if (screen_space_aa == p_screen_space_aa) {
		return;
	}
	screen_space_aa = p_screen_space_aa;
	RS::get_singleton()->viewport_set_screen_space_aa(viewport, RS::ViewportScreenSpaceAA(p_screen_space_aa));
}
Viewport::ScreenSpaceAA Viewport::get_screen_space_aa() const {
	ERR_READ_THREAD_GUARD_V(SCREEN_SPACE_AA_DISABLED);
	return screen_space_aa;
}
void Viewport::set_use_taa(bool p_use_taa) {