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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

"    <application android:label=\"@string/godot_project_name_string\"\n"
			"        android:allowBackup=\"%s\"\n"
			"        android:icon=\"@mipmap/icon\"\n"
			"        android:appCategory=\"%s\"\n"
			"        android:isGame=\"%s\"\n"
			"        android:hasFragileUserData=\"%s\"\n"
			"        android:requestLegacyExternalStorage=\"%s\"\n"
			"        tools:replace=\"android:allowBackup,android:appCategory,android:isGame,android:hasFragileUserData,android:requestLegacyExternalStorage\"\n"
			"        tools:ignore=\"GoogleAppIndexingWarning\">\n\n",
			bool_to_string(p_preset->get("user_data_backup/allow")),
			_get_app_category_label(app_category_index),
			bool_to_string(is_game),
			bool_to_string(p_preset->get("package/retain_data_on_uninstall")),
			bool_to_string(p_has_read_write_storage_permission));
	if (uses_xr) {
		bool hand_tracking_enabled = (int)(p_preset->get("xr_features/hand_tracking")) > XR_HAND_TRACKING_NONE;
		if (hand_tracking_enabled) {
			int hand_tracking_frequency_index = p_preset->get("xr_features/hand_tracking_frequency");
			String hand_tracking_frequency = hand_tracking_frequency_index == XR_HAND_TRACKING_FREQUENCY_LOW ? "LOW" : "HIGH";
			manifest_application_text += vformat(
					"        <meta-data tools:node=\"replace\" android:name=\"com.oculus.handtracking.frequency\" android:value=\"%s\" />\n",
					hand_tracking_frequency);
			manifest_application_text += "        <meta-data tools:node=\"replace\" android:name=\"com.oculus.handtracking.version\" android:value=\"V2.0\" />\n";
		}
	}
	manifest_application_text += _get_activity_tag(p_preset, uses_xr);
	manifest_application_text += "    </application>\n";
	return manifest_application_text;
}