### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
List<String> extensions;
			Ref<PackedScene> sd = memnew(PackedScene);
			ResourceSaver::get_recognized_extensions(sd, &extensions);
			file->clear_filters();
			for (int i = 0; i < extensions.size(); i++) {
				file->add_filter("*." + extensions[i], extensions[i].to_upper());
			}
			if (!scene->get_scene_file_path().is_empty()) {
				String path = scene->get_scene_file_path();
				file->set_current_path(path);
				if (extensions.size()) {
					String ext = path.get_extension().to_lower();
					if (extensions.find(ext) == nullptr) {
						file->set_current_path(path.replacen("." + ext, "." + extensions.front()->get()));
					}
				}
			} else if (extensions.size()) {
				String root_name = scene->get_name();
				root_name = EditorNode::adjust_scene_name_casing(root_name);
				file->set_current_path(root_name + "." + extensions.front()->get().to_lower());
			}
			file->popup_file_dialog();
			file->set_title(TTR("Save Scene As..."));
		} break;
		case FILE_SAVE_ALL_SCENES: {
			_save_all_scenes();
		} break;
		case FILE_RUN_SCENE: {
			project_run_bar->play_current_scene();
		} break;