### Godot version

4.2 6da4ad1

### System information

Windows 10.0.19045 - Vulkan (Forward+) - dedicated NVIDIA GeForce GTX 1060 (NVIDIA; 30.0.15.1403) - Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz (8 Threads)

### Issue description

![image](https://github.com/godotengine/godot/assets/2223172/d65ab202-93dd-4d83-bcef-c2b34bfa23f3)

In 4.2 dev3:
![image](https://github.com/godotengine/godot/assets/2223172/8621ec24-65d4-490d-bfc1-7e6e8aa3606a)


### Steps to reproduce

1. Create a scene with some children
2. Instantiate it in another scene
3. Enable editable children

### Minimal reproduction project

N/A
bool is_pinned = AnimationPlayerEditor::get_singleton()->get_player() == p_node && AnimationPlayerEditor::get_singleton()->is_pinned();
			if (is_pinned) {
				item->add_button(0, get_theme_icon(SNAME("Pin"), SNAME("EditorIcons")), BUTTON_PIN, false, TTR("AnimationPlayer is pinned.\nClick to unpin."));
			}
		}
	}
	if (editor_selection) {
		if (editor_selection->is_selected(p_node)) {
			item->select(0);
		}
	}
	if (selected == p_node) {
		if (!editor_selection) {
			item->select(0);
		}
		item->set_as_cursor(0);
	}
	for (int i = 0; i < p_node->get_child_count(); i++) {
		_add_nodes(p_node->get_child(i), item);
	}
	if (valid_types.size()) {
		bool valid = false;
		for (const StringName &E : valid_types) {
			if (p_node->is_class(E) ||
					EditorNode::get_singleton()->is_object_of_custom_type(p_node, E)) {
				valid = true;
				break;
			}
		}
		if (!valid) {