### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ResourceImporterScene::add_importer(import_obj2);
			Ref<EditorSceneFormatImporterESCN> import_escn;
			import_escn.instantiate();
			ResourceImporterScene::add_importer(import_escn);
		}
		Ref<ResourceImporterBitMap> import_bitmap;
		import_bitmap.instantiate();
		ResourceFormatImporter::get_singleton()->add_importer(import_bitmap);
	}
	{
		Ref<EditorInspectorDefaultPlugin> eidp;
		eidp.instantiate();
		EditorInspector::add_inspector_plugin(eidp);
		Ref<EditorInspectorRootMotionPlugin> rmp;
		rmp.instantiate();
		EditorInspector::add_inspector_plugin(rmp);
		Ref<EditorInspectorVisualShaderModePlugin> smp;
		smp.instantiate();
		EditorInspector::add_inspector_plugin(smp);
	}
	editor_selection = memnew(EditorSelection);
	EditorFileSystem *efs = memnew(EditorFileSystem);
	add_child(efs);
	
	FileDialog::get_icon_func = _file_dialog_get_icon;
	FileDialog::register_func = _file_dialog_register;
	FileDialog::unregister_func = _file_dialog_unregister;
	EditorFileDialog::get_icon_func = _file_dialog_get_icon;
	EditorFileDialog::register_func = _editor_file_dialog_register;
	EditorFileDialog::unregister_func = _editor_file_dialog_unregister;