### Godot version

3.5.2.stable, 4.0.1.stable

### System information

Arch Linux

### Issue description

When the `Show Hidden Files` property is enabled in the Editor Settings:
![image](https://user-images.githubusercontent.com/6501975/226908540-8e70e520-3dcd-46e4-beaf-103ac176c1de.png)
Any `FileDialog` nodes from the project will inherit this setting, and their `Show Hidden Files` property is set to true everytime the scene is re-opened:

https://user-images.githubusercontent.com/6501975/226909135-a8fafdf7-ca36-40aa-b69a-a7baf2d7ae4f.mp4


This occurs on 3.5.2 as well.

### Steps to reproduce

- Enable `Show Hidden Files` property in the Editor Settings:
    - Reload Godot for the bug to occur
- Create a FileDialog node, and set it's `Show Hidden Files` property to false
- Save and close the scene, and reopen it
- The `Show Hidden Files` property is reset to true.

### Minimal reproduction project

N/A
dock_slot[DOCK_SLOT_LEFT_UR]->set_tab_title(dock_slot[DOCK_SLOT_LEFT_UR]->get_tab_idx_from_control(SceneTreeDock::get_singleton()), TTR("Scene"));
	
	dock_slot[DOCK_SLOT_LEFT_UR]->add_child(ImportDock::get_singleton());
	dock_slot[DOCK_SLOT_LEFT_UR]->set_tab_title(dock_slot[DOCK_SLOT_LEFT_UR]->get_tab_idx_from_control(ImportDock::get_singleton()), TTR("Import"));
	
	dock_slot[DOCK_SLOT_LEFT_BR]->add_child(FileSystemDock::get_singleton());
	dock_slot[DOCK_SLOT_LEFT_BR]->set_tab_title(dock_slot[DOCK_SLOT_LEFT_BR]->get_tab_idx_from_control(FileSystemDock::get_singleton()), TTR("FileSystem"));
	
	dock_slot[DOCK_SLOT_RIGHT_UL]->add_child(InspectorDock::get_singleton());
	dock_slot[DOCK_SLOT_RIGHT_UL]->set_tab_title(dock_slot[DOCK_SLOT_RIGHT_UL]->get_tab_idx_from_control(InspectorDock::get_singleton()), TTR("Inspector"));
	
	dock_slot[DOCK_SLOT_RIGHT_UL]->add_child(NodeDock::get_singleton());
	dock_slot[DOCK_SLOT_RIGHT_UL]->set_tab_title(dock_slot[DOCK_SLOT_RIGHT_UL]->get_tab_idx_from_control(NodeDock::get_singleton()), TTR("Node"));
	
	dock_slot[DOCK_SLOT_RIGHT_UL]->add_child(history_dock);
	dock_slot[DOCK_SLOT_RIGHT_UL]->set_tab_title(dock_slot[DOCK_SLOT_RIGHT_UL]->get_tab_idx_from_control(history_dock), TTR("History"));
	
	dock_slot[DOCK_SLOT_LEFT_UL]->hide();
	dock_slot[DOCK_SLOT_LEFT_BL]->hide();
	dock_slot[DOCK_SLOT_RIGHT_BL]->hide();
	dock_slot[DOCK_SLOT_RIGHT_UR]->hide();
	dock_slot[DOCK_SLOT_RIGHT_BR]->hide();
	left_l_vsplit->hide();
	right_r_vsplit->hide();
	
	left_r_hsplit->set_split_offset(270 * EDSCALE);
	main_hsplit->set_split_offset(-270 * EDSCALE);
	
	const String docks_section = "docks";
	default_layout.instantiate();