### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
resource_conversion_plugins.push_back(orm_mat_convert);
		Ref<CanvasItemMaterialConversionPlugin> canvas_item_mat_convert;
		canvas_item_mat_convert.instantiate();
		resource_conversion_plugins.push_back(canvas_item_mat_convert);
		Ref<ParticleProcessMaterialConversionPlugin> particles_mat_convert;
		particles_mat_convert.instantiate();
		resource_conversion_plugins.push_back(particles_mat_convert);
		Ref<ProceduralSkyMaterialConversionPlugin> procedural_sky_mat_convert;
		procedural_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(procedural_sky_mat_convert);
		Ref<PanoramaSkyMaterialConversionPlugin> panorama_sky_mat_convert;
		panorama_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(panorama_sky_mat_convert);
		Ref<PhysicalSkyMaterialConversionPlugin> physical_sky_mat_convert;
		physical_sky_mat_convert.instantiate();
		resource_conversion_plugins.push_back(physical_sky_mat_convert);
		Ref<FogMaterialConversionPlugin> fog_mat_convert;
		fog_mat_convert.instantiate();
		resource_conversion_plugins.push_back(fog_mat_convert);
		Ref<VisualShaderConversionPlugin> vshader_convert;
		vshader_convert.instantiate();
		resource_conversion_plugins.push_back(vshader_convert);
	}
	update_spinner_step_msec = OS::get_singleton()->get_ticks_msec();
	update_spinner_step_frame = Engine::get_singleton()->get_frames_drawn();
	editor_plugin_screen = nullptr;
	editor_plugins_over = memnew(EditorPluginList);
	editor_plugins_force_over = memnew(EditorPluginList);
	editor_plugins_force_input_forwarding = memnew(EditorPluginList);
	Ref<GDExtensionExportPlugin> gdextension_export_plugin;