### Godot version

v4.1.stable.official [970459615]

### System information

Godot v4.1.stable - Windows 10.0.22621 - Vulkan (Forward+) - dedicated NVIDIA GeForce GTX 1660 Ti (NVIDIA; 31.0.15.3598) - AMD Ryzen 7 3700X 8-Core Processor (16 Threads)

### Issue description

is_input_handled() is returning True, even though set_input_as_handled() has not been called.

Example:
`func _input_event(viewport, event, shape_idx):
	print(viewport.is_input_handled())`

Returns 'True', should return 'False'

### Steps to reproduce

1. Create a new project and add a Node2D as the root
2. Add a child Area2D node containing a CollisionShape2D and a Sprite2D
3. Either create the _input_event(viewport, event, shape_idx) or connect _on_input_event(viewport, event, shape_idx)
4. Print viewport.is_input_handled()
5. True is printed.

### Minimal reproduction project

[input_test.zip](https://github.com/godotengine/godot/files/12063748/input_test.zip)

#ifndef _3D_DISABLED
	if (use_xr) {
		if (XRServer::get_singleton() != nullptr) {
			Ref<XRInterface> xr_interface = XRServer::get_singleton()->get_primary_interface();
			if (xr_interface.is_valid() && xr_interface->is_initialized()) {
				Size2 xr_size = xr_interface->get_render_target_size();
				return (Size2i)xr_size;
			}
		}
		return Size2i();
	}
#endif 
	return size;
}
Size2i Viewport::_get_size_2d_override() const {