### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
dock_select->set_v_size_flags(Control::SIZE_EXPAND_FILL);
	dock_vb->add_child(dock_select);
	if (!SceneTree::get_singleton()->get_root()->is_embedding_subwindows() && !EDITOR_GET("interface/editor/single_window_mode") && EDITOR_GET("interface/multi_window/enable")) {
		dock_float = memnew(Button);
		dock_float->set_icon(theme->get_icon("MakeFloating", "EditorIcons"));
		dock_float->set_text(TTR("Make Floating"));
		dock_float->set_focus_mode(Control::FOCUS_NONE);
		dock_float->set_h_size_flags(Control::SIZE_SHRINK_CENTER);
		dock_float->connect("pressed", callable_mp(this, &EditorNode::_dock_make_selected_float));
		dock_vb->add_child(dock_float);
	}
	dock_select_popup->reset_size();
	for (int i = 0; i < DOCK_SLOT_MAX; i++) {
		dock_slot[i]->set_custom_minimum_size(Size2(170, 0) * EDSCALE);
		dock_slot[i]->set_v_size_flags(Control::SIZE_EXPAND_FILL);
		dock_slot[i]->set_popup(dock_select_popup);
		dock_slot[i]->connect("pre_popup_pressed", callable_mp(this, &EditorNode::_dock_pre_popup).bind(i));
		dock_slot[i]->set_drag_to_rearrange_enabled(true);
		dock_slot[i]->set_tabs_rearrange_group(1);
		dock_slot[i]->connect("tab_changed", callable_mp(this, &EditorNode::_dock_tab_changed));
		dock_slot[i]->set_use_hidden_tabs_for_min_size(true);
	}
	editor_layout_save_delay_timer = memnew(Timer);
	add_child(editor_layout_save_delay_timer);
	editor_layout_save_delay_timer->set_wait_time(0.5);
	editor_layout_save_delay_timer->set_one_shot(true);
	editor_layout_save_delay_timer->connect("timeout", callable_mp(this, &EditorNode::_save_editor_layout));
	top_split = memnew(VSplitContainer);
	center_split->add_child(top_split);
	top_split->set_v_size_flags(Control::SIZE_EXPAND_FILL);