### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
String addon_path = p_addon;
	if (!addon_path.begins_with("res:")) {
		addon_path = "res:addons/" + addon_path + "/plugin.cfg";
	}
	ERR_FAIL_COND(p_enabled && addon_name_to_plugin.has(addon_path));
	ERR_FAIL_COND(!p_enabled && !addon_name_to_plugin.has(addon_path));
	if (!p_enabled) {
		EditorPlugin *addon = addon_name_to_plugin[addon_path];
		remove_editor_plugin(addon, p_config_changed);
		memdelete(addon);
		addon_name_to_plugin.erase(addon_path);
		_update_addon_config();
		return;
	}
	Ref<ConfigFile> cf;
	cf.instantiate();
	if (!DirAccess::exists(addon_path.get_base_dir())) {
		_remove_plugin_from_enabled(addon_path);
		WARN_PRINT("Addon '" + addon_path + "' failed to load. No directory found. Removing from enabled plugins.");