### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ProjectSettings::get_singleton()->setup(ProjectSettings::get_singleton()->get_resource_path(), String(), true);
	settings_changed = true;
}
void EditorNode::_vp_resized() {
}
void EditorNode::_titlebar_resized() {
	DisplayServer::get_singleton()->window_set_window_buttons_offset(Vector2i(title_bar->get_global_position().y + title_bar->get_size().y / 2, title_bar->get_global_position().y + title_bar->get_size().y / 2), DisplayServer::MAIN_WINDOW_ID);
	const Vector3i &margin = DisplayServer::get_singleton()->window_get_safe_title_margins(DisplayServer::MAIN_WINDOW_ID);
	if (left_menu_spacer) {
		int w = (gui_base->is_layout_rtl()) ? margin.y : margin.x;
		left_menu_spacer->set_custom_minimum_size(Size2(w, 0));
	}
	if (right_menu_spacer) {
		int w = (gui_base->is_layout_rtl()) ? margin.x : margin.y;
		right_menu_spacer->set_custom_minimum_size(Size2(w, 0));
	}
	if (title_bar) {
		title_bar->set_custom_minimum_size(Size2(0, margin.z - title_bar->get_global_position().y));
	}
}
void EditorNode::_version_button_pressed() {
	DisplayServer::get_singleton()->clipboard_set(version_btn->get_meta(META_TEXT_TO_COPY));
}
void EditorNode::_update_undo_redo_allowed() {
	EditorUndoRedoManager *undo_redo = EditorUndoRedoManager::get_singleton();
	file_menu->set_item_disabled(file_menu->get_item_index(EDIT_UNDO), !undo_redo->has_undo());
	file_menu->set_item_disabled(file_menu->get_item_index(EDIT_REDO), !undo_redo->has_redo());
}
void EditorNode::_node_renamed() {