### Godot version

v4.2.dev.custom_build [60f3b7967]

### System information

Debian Linux X11 Xfce

### Issue description

Physics Picking within a `SubViewport` happens with `InputEventMouse` even when mouse events are disabled via `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`

The problem is that passive hovering still happens in the `SubViewport` with `SubViewportContainer.mouse_filter = Control.MOUSE_FILTER_IGNORE`.

I assume that it is a regression from #78017.

This was initially reported as a side-effect in #79271, which got closed, because the main issue was resolved.



### Steps to reproduce

1. Load and run MRP
2. move mouse over Icon

I would expect, that the `Area2D` receives no `InputEventMouse`, however it gets `_input_event` and also mouse-entered and mouse-exited signals.

### Minimal reproduction project

[IgnorePassiveHover.zip](https://github.com/godotengine/godot/files/12044510/IgnorePassiveHover.zip)

ERR_FAIL_COND(p_event.is_null());
	Ref<InputEventMouseButton> mb = p_event;
	if (mb.is_valid()) {
		gui.key_event_accepted = false;
		Point2 mpos = mb->get_position();
		if (mb->is_pressed()) {
			if (!gui.mouse_focus_mask.is_empty()) {
				
				gui.mouse_focus_mask.set_flag(mouse_button_to_mask(mb->get_button_index()));
			} else {
				gui.mouse_focus = gui_find_control(mpos);
				gui.last_mouse_focus = gui.mouse_focus;
				if (!gui.mouse_focus) {
					return;
				}