### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
}
	}
	file->set_file_mode(EditorFileDialog::FILE_MODE_SAVE_FILE);
	saving_resource = p_resource;
	current_menu_option = RESOURCE_SAVE_AS;
	List<String> extensions;
	Ref<PackedScene> sd = memnew(PackedScene);
	ResourceSaver::get_recognized_extensions(p_resource, &extensions);
	file->clear_filters();
	List<String> preferred;
	for (const String &E : extensions) {
		if (p_resource->is_class("Script") && (E == "tres" || E == "res")) {
			
			continue;
		}
		file->add_filter("*." + E, E.to_upper());
		preferred.push_back(E);
	}
	
	List<String>::Element *res_element = preferred.find("res");
	if (res_element) {
		preferred.move_to_back(res_element);
	}
	
	List<String>::Element *tres_element = preferred.find("tres");
	if (tres_element) {
		preferred.move_to_front(tres_element);
	}
	if (!p_at_path.is_empty()) {
		file->set_current_dir(p_at_path);