### Godot version

4.0 stable

### System information

Windows 10

### Issue description

Running .clear() on a TileMap with Scene tiles leaves the tiles in place, as though nothing happened.

This appears to be the same issue as raised in [#69596](https://github.com/godotengine/godot/issues/69596), [#72456](https://github.com/godotengine/godot/pull/72456), and [67330](https://github.com/godotengine/godot/pull/67330). None of the previous issues seem to have presented a fix for this issue besides running some dummy operations on the TileMap, which have not had any effect for me.

Manually running queue_free() on each tile scene doesn't work, presumably since they are being cached. And running a dummy operation on the TileMap doesn't have any impact to speak of.

Not sure how to proceed, or if it's just impossible to remove Scene tiles once they're created.

### Steps to reproduce

The minimal reproduction project has a TileMap with several simple scene tiles. The attached script attempts to .clear() the TileMap when the user presses Enter, demonstrating my issue.

### Minimal reproduction project

[TileMapMinimumRecreationProject.zip](https://github.com/godotengine/godot/files/10959111/TileMapMinimumRecreationProject.zip)

TILEMAP_CALL_FOR_LAYER(p_layer, set_enabled, p_enabled);
}
bool TileMap::is_layer_enabled(int p_layer) const {
	TILEMAP_CALL_FOR_LAYER_V(p_layer, false, is_enabled);
}
void TileMap::set_layer_modulate(int p_layer, Color p_modulate) {
	TILEMAP_CALL_FOR_LAYER(p_layer, set_modulate, p_modulate);
}
Color TileMap::get_layer_modulate(int p_layer) const {
	TILEMAP_CALL_FOR_LAYER_V(p_layer, Color(), get_modulate);
}
void TileMap::set_layer_y_sort_enabled(int p_layer, bool p_y_sort_enabled) {
	TILEMAP_CALL_FOR_LAYER(p_layer, set_y_sort_enabled, p_y_sort_enabled);
}
bool TileMap::is_layer_y_sort_enabled(int p_layer) const {
	TILEMAP_CALL_FOR_LAYER_V(p_layer, false, is_y_sort_enabled);
}
void TileMap::set_layer_y_sort_origin(int p_layer, int p_y_sort_origin) {
	TILEMAP_CALL_FOR_LAYER(p_layer, set_y_sort_origin, p_y_sort_origin);
}
int TileMap::get_layer_y_sort_origin(int p_layer) const {
	TILEMAP_CALL_FOR_LAYER_V(p_layer, 0, get_y_sort_origin);
}
void TileMap::set_layer_z_index(int p_layer, int p_z_index) {
	TILEMAP_CALL_FOR_LAYER(p_layer, set_z_index, p_z_index);
}
int TileMap::get_layer_z_index(int p_layer) const {
	TILEMAP_CALL_FOR_LAYER_V(p_layer, 0, get_z_index);
}
void TileMap::set_layer_navigation_map(int p_layer, RID p_map) {