### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
_screenshot();
}
void EditorNode::_screenshot(bool p_use_utc) {
	String name = "editor_screenshot_" + Time::get_singleton()->get_datetime_string_from_system(p_use_utc).replace(":", "") + ".png";
	NodePath path = String("user:") + name;
	_save_screenshot(path);
	if (EDITOR_GET("interface/editor/automatically_open_screenshots")) {
		OS::get_singleton()->shell_show_in_file_manager(ProjectSettings::get_singleton()->globalize_path(path), true);
	}
}
void EditorNode::_save_screenshot(NodePath p_path) {
	Control *editor_main_screen = EditorInterface::get_singleton()->get_editor_main_screen();
	ERR_FAIL_COND_MSG(!editor_main_screen, "Cannot get the editor main screen control.");
	Viewport *viewport = editor_main_screen->get_viewport();
	ERR_FAIL_COND_MSG(!viewport, "Cannot get a viewport from the editor main screen.");
	Ref<ViewportTexture> texture = viewport->get_texture();
	ERR_FAIL_COND_MSG(texture.is_null(), "Cannot get a viewport texture from the editor main screen.");
	Ref<Image> img = texture->get_image();
	ERR_FAIL_COND_MSG(img.is_null(), "Cannot get an image from a viewport texture of the editor main screen.");
	Error error = img->save_png(p_path);
	ERR_FAIL_COND_MSG(error != OK, "Cannot save screenshot to file '" + p_path + "'.");
}
void EditorNode::_tool_menu_option(int p_idx) {