### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
DisplayServer::get_singleton()->cursor_set_custom_image(Ref<Resource>());
	}
	singleton = this;
	EditorUndoRedoManager::get_singleton()->connect("version_changed", callable_mp(this, &EditorNode::_update_undo_redo_allowed));
	EditorUndoRedoManager::get_singleton()->connect("history_changed", callable_mp(this, &EditorNode::_update_undo_redo_allowed));
	TranslationServer::get_singleton()->set_enabled(false);
	
	if (!EditorSettings::get_singleton()) {
		EditorSettings::create();
	}
	FileAccess::set_backup_save(EDITOR_GET("filesystem/on_save/safe_save_on_backup_then_rename"));
	{
		int display_scale = EDITOR_GET("interface/editor/display_scale");
		switch (display_scale) {
			case 0:
				
				EditorScale::set_scale(EditorSettings::get_singleton()->get_auto_display_scale());
				break;
			case 1:
				EditorScale::set_scale(0.75);
				break;
			case 2:
				EditorScale::set_scale(1.0);
				break;
			case 3:
				EditorScale::set_scale(1.25);
				break;
			case 4:
				EditorScale::set_scale(1.5);
				break;