### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
Vector2 mouse_local_pos = tile_atlas_control->get_local_mouse_position();
			TileSelection selected = { tile_atlas_view->get_atlas_tile_coords_at_pos(mouse_local_pos), 0 };
			if (selected.tile != TileSetSource::INVALID_ATLAS_COORDS) {
				selected.tile = tile_set_atlas_source->get_tile_at_coords(selected.tile);
			}
			
			if (selection.size() <= 1) {
				if (selected.tile != TileSetSource::INVALID_ATLAS_COORDS) {
					undo_redo->create_action(TTR("Select tiles"));
					undo_redo->add_undo_method(this, "_set_selection_from_array", _get_selection_as_array());
					selection.clear();
					selection.insert(selected);
					undo_redo->add_do_method(this, "_set_selection_from_array", _get_selection_as_array());
					undo_redo->commit_action(false);
					_update_tile_inspector();
					_update_tile_id_label();
					_update_current_tile_data_editor();
				}
			}
			
			if (selected.tile != TileSetSource::INVALID_ATLAS_COORDS && selection.has(selected)) {
				
				menu_option_coords = selected.tile;
				menu_option_alternative = 0;
				base_tile_popup_menu->popup(Rect2i(get_screen_transform().xform(get_local_mouse_position()), Size2i()));
			} else if (hovered_base_tile_coords != TileSetSource::INVALID_ATLAS_COORDS) {
				
				menu_option_coords = hovered_base_tile_coords;
				menu_option_alternative = TileSetSource::INVALID_TILE_ALTERNATIVE;
				empty_base_tile_popup_menu->popup(Rect2i(get_screen_transform().xform(get_local_mouse_position()), Size2i()));