### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
ep->setup_multiple_mode(vformat("physics_layer_%d/polygons", layer_index), vformat("physics_layer_%d/polygons_count", layer_index), vformat("physics_layer_%d/polygon_%%d/points", layer_index), "");
			Vector<String> properties;
			properties.push_back(p_path);
			int count = p_object->get(vformat("physics_layer_%d/polygons_count", layer_index));
			for (int i = 0; i < count; i++) {
				properties.push_back(vformat(vformat("physics_layer_%d/polygon_%d/points", layer_index, i)));
			}
			add_property_editor_for_multiple_properties("Polygons", properties, ep);
			return true;
		} else if (components.size() == 3 && components[1].begins_with("polygon_") && components[1].trim_prefix("polygon_").is_valid_int()) {
			int polygon_index = components[1].trim_prefix("polygon_").to_int();
			ERR_FAIL_COND_V(polygon_index < 0, false);
			if (components[2] == "points") {
				return true;
			}
		}
	} else if (components.size() == 2 && components[0].begins_with("navigation_layer_") && components[0].trim_prefix("navigation_layer_").is_valid_int()) {
		
		int layer_index = components[0].trim_prefix("navigation_layer_").to_int();
		ERR_FAIL_COND_V(layer_index < 0, false);
		if (components[1] == "polygon") {
			EditorPropertyTilePolygon *ep = memnew(EditorPropertyTilePolygon);
			ep->setup_single_mode(p_path, "NavigationPolygon");
			add_property_editor(p_path, ep);
			return true;
		}
	}
	return false;
}
Control::CursorShape TileSetAtlasSourceEditor::TileAtlasControl::get_cursor_shape(const Point2 &p_pos) const {