### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
resource_conversion_plugins.push_back(p_plugin);
}
void EditorNode::remove_resource_conversion_plugin(const Ref<EditorResourceConversionPlugin> &p_plugin) {
	resource_conversion_plugins.erase(p_plugin);
}
Vector<Ref<EditorResourceConversionPlugin>> EditorNode::find_resource_conversion_plugin(const Ref<Resource> &p_for_resource) {
	Vector<Ref<EditorResourceConversionPlugin>> ret;
	for (int i = 0; i < resource_conversion_plugins.size(); i++) {
		if (resource_conversion_plugins[i].is_valid() && resource_conversion_plugins[i]->handles(p_for_resource)) {
			ret.push_back(resource_conversion_plugins[i]);
		}
	}
	return ret;
}
void EditorNode::_bottom_panel_raise_toggled(bool p_pressed) {
	top_split->set_visible(!p_pressed);
}
void EditorNode::_update_renderer_color() {
	String rendering_method = renderer->get_selected_metadata();
	if (rendering_method == "forward_plus") {
		renderer->add_theme_color_override("font_color", Color::hex(0x5d8c3fff));
	}
	if (rendering_method == "mobile") {
		renderer->add_theme_color_override("font_color", Color::hex(0xa5557dff));
	}
	if (rendering_method == "gl_compatibility") {
		renderer->add_theme_color_override("font_color", Color::hex(0x5586a4ff));
	}
}
void EditorNode::_renderer_selected(int p_which) {