### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
OS::get_singleton()->shell_show_in_file_manager(OS::get_singleton()->get_user_data_dir(), true);
		} break;
		case FILE_EXPLORE_ANDROID_BUILD_TEMPLATES: {
			OS::get_singleton()->shell_show_in_file_manager(ProjectSettings::get_singleton()->get_resource_path().path_join("android"), true);
		} break;
		case FILE_QUIT:
		case RUN_PROJECT_MANAGER:
		case RELOAD_CURRENT_PROJECT: {
			if (p_confirmed && plugin_to_save) {
				plugin_to_save->save_external_data();
				p_confirmed = false;
			}
			if (!p_confirmed) {
				bool save_each = EDITOR_GET("interface/editor/save_each_scene_on_quit");
				if (_next_unsaved_scene(!save_each) == -1) {
					if (EditorUndoRedoManager::get_singleton()->is_history_unsaved(EditorUndoRedoManager::GLOBAL_HISTORY)) {
						if (p_option == RELOAD_CURRENT_PROJECT) {
							save_confirmation->set_ok_button_text(TTR("Save & Reload"));
							save_confirmation->set_text(TTR("Save modified resources before reloading?"));
						} else {
							save_confirmation->set_ok_button_text(TTR("Save & Quit"));
							save_confirmation->set_text(TTR("Save modified resources before closing?"));
						}
						save_confirmation->reset_size();
						save_confirmation->popup_centered();
						break;
					}
					plugin_to_save = nullptr;
					for (int i = 0; i < editor_data.get_editor_plugin_count(); i++) {
						const String unsaved_status = editor_data.get_editor_plugin(i)->get_unsaved_status();