### Godot version

4.1.beta (7b1387ff2)

### System information

Mageia 9, Linux

### Issue description

When opening an empty project in latest `master`, I get these errors:
```
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: get_scene_path (editor/scu/../editor_data.cpp:880)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: check_and_update_scene (editor/scu/../editor_data.cpp:683)
ERROR: Index p_idx = -1 is out of bounds (edited_scene.size() = 1).
   at: set_edited_scene (editor/scu/../editor_data.cpp:745)
```

Possibly related to recent changes to restore past sessions, but there's nothing to restore in this case?

### Steps to reproduce

- Create a new project, edit it
- Quit to project manager
- Re-open the newly created project -> errors

### Minimal reproduction project

Empty project.
}
					
					for (KeyValue<Node *, Node *> &E : additive_node_entry.ownership_table) {
						Node *current_ancestor = E.key;
						Node *ancestor_owner = E.value;
						if (ancestor_owner == original_node) {
							ancestor_owner = instantiated_node;
						}
						current_ancestor->set_owner(ancestor_owner);
					}
				}
				
				if (selected_node_paths.size()) {
					for (NodePath selected_node_path : selected_node_paths) {
						Node *selected_node = instantiated_node->get_node_or_null(selected_node_path);
						if (selected_node) {
							editor_selection->add_node(selected_node);
						}
					}
					editor_selection->update();
				}
				
				for (KeyValue<NodePath, ModificationNodeEntry> &E : modification_table) {
					NodePath new_current_path = E.key;
					Node *modifiable_node = instantiated_node->get_node_or_null(new_current_path);
					if (modifiable_node) {
						
						List<PropertyInfo> pinfo;
						modifiable_node->get_property_list(&pinfo);