### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
if (selected_tab_idx >= 0) {
			p_layout->set_value(p_section, "dock_" + itos(i + 1) + "_selected_tab_idx", selected_tab_idx);
		}
	}
	Dictionary floating_docks_dump;
	for (WindowWrapper *wrapper : floating_docks) {
		Control *dock = wrapper->get_wrapped_control();
		Dictionary dock_dump;
		dock_dump["window_rect"] = wrapper->get_window_rect();
		int screen = wrapper->get_window_screen();
		dock_dump["window_screen"] = wrapper->get_window_screen();
		dock_dump["window_screen_rect"] = DisplayServer::get_singleton()->screen_get_usable_rect(screen);
		String name = dock->get_name();
		floating_docks_dump[name] = dock_dump;
		int dock_slot_id = wrapper->get_meta("dock_slot");
		String config_key = "dock_" + itos(dock_slot_id + 1);
		String names = p_layout->get_value(p_section, config_key, "");
		if (names.is_empty()) {
			names = name;
		} else {
			names += "," + name;
		}
		p_layout->set_value(p_section, config_key, names);
	}
	p_layout->set_value(p_section, "dock_floating", floating_docks_dump);
	for (int i = 0; i < vsplits.size(); i++) {
		if (vsplits[i]->is_visible_in_tree()) {
			p_layout->set_value(p_section, "dock_split_" + itos(i + 1), vsplits[i]->get_split_offset());
		}
	}