### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
help_menu->add_icon_shortcut(gui_base->get_theme_icon(SNAME("Godot"), SNAME("EditorIcons")), ED_SHORTCUT_AND_COMMAND("editor/about", TTR("About Godot")), HELP_ABOUT);
	}
	help_menu->add_icon_shortcut(gui_base->get_theme_icon(SNAME("Heart"), SNAME("EditorIcons")), ED_SHORTCUT_AND_COMMAND("editor/support_development", TTR("Support Godot Development")), HELP_SUPPORT_GODOT_DEVELOPMENT);
	
	Control *right_spacer = memnew(Control);
	right_spacer->set_mouse_filter(Control::MOUSE_FILTER_PASS);
	right_spacer->set_h_size_flags(Control::SIZE_EXPAND_FILL);
	title_bar->add_child(right_spacer);
	project_run_bar = memnew(EditorRunBar);
	title_bar->add_child(project_run_bar);
	project_run_bar->connect("play_pressed", callable_mp(this, &EditorNode::_project_run_started));
	project_run_bar->connect("stop_pressed", callable_mp(this, &EditorNode::_project_run_stopped));
	HBoxContainer *right_menu_hb = memnew(HBoxContainer);
	title_bar->add_child(right_menu_hb);
	renderer = memnew(OptionButton);
	renderer->set_visible(true);
	renderer->set_flat(true);
	renderer->set_fit_to_longest_item(false);
	renderer->set_focus_mode(Control::FOCUS_NONE);
	renderer->connect("item_selected", callable_mp(this, &EditorNode::_renderer_selected));
	renderer->add_theme_font_override("font", gui_base->get_theme_font(SNAME("bold"), SNAME("EditorFonts")));
	renderer->add_theme_font_size_override("font_size", gui_base->get_theme_font_size(SNAME("bold_size"), SNAME("EditorFonts")));
	renderer->set_tooltip_text(TTR("Choose a renderer."));
	right_menu_hb->add_child(renderer);
	if (can_expand) {
		
		right_menu_spacer = memnew(Control);
		right_menu_spacer->set_mouse_filter(Control::MOUSE_FILTER_PASS);
		title_bar->add_child(right_menu_spacer);
	}