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***Bugsquad note:** This issue has been confirmed several times already. No need to confirm it further.*

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### Godot version

v4.0.2.stable.official [7a0977ce2]

### System information

Ubuntu 22.04

### Issue description

I followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

I want to create Android launcher app to do this i added following code to AndroidManifest.xml in Android Studio.
`<category android:name="android.intent.category.HOME" />
<category android:name="android.intent.category.DEFAULT" />`

But when I export APK my modifications are removed from AndroidManifest.xml.


### Steps to reproduce

Followed this tutorial
https://docs.godotengine.org/en/stable/tutorials/export/android_custom_build.html#doc-android-custom-build.

then open android project in Android studio and edit AndroidManifest.xml.

### Minimal reproduction project

N/A

attr_uses_permission_string = string_table.size() - 1;
					}
					for (int i = 0; i < perms.size(); ++i) {
						print_line("Adding permission " + perms[i]);
						manifest_cur_size += 56 + 24; 
						p_manifest.resize(manifest_cur_size);
						
						int32_t perm_string = string_table.find(perms[i]);
						if (perm_string == -1) {
							string_table.push_back(perms[i]);
							perm_string = string_table.size() - 1;
						}
						
						encode_uint16(0x102, &p_manifest.write[ofs]); 
						encode_uint16(16, &p_manifest.write[ofs + 2]); 
						encode_uint32(56, &p_manifest.write[ofs + 4]); 
						encode_uint32(0, &p_manifest.write[ofs + 8]); 
						encode_uint32(-1, &p_manifest.write[ofs + 12]); 
						encode_uint32(-1, &p_manifest.write[ofs + 16]); 
						encode_uint32(attr_uses_permission_string, &p_manifest.write[ofs + 20]); 
						encode_uint16(20, &p_manifest.write[ofs + 24]); 
						encode_uint16(20, &p_manifest.write[ofs + 26]); 
						encode_uint16(1, &p_manifest.write[ofs + 28]); 
						encode_uint16(0, &p_manifest.write[ofs + 30]); 
						encode_uint16(0, &p_manifest.write[ofs + 32]); 
						encode_uint16(0, &p_manifest.write[ofs + 34]); 
						
						encode_uint32(ns_android_string, &p_manifest.write[ofs + 36]); 
						encode_uint32(attr_name_string, &p_manifest.write[ofs + 40]); 
						encode_uint32(perm_string, &p_manifest.write[ofs + 44]);