### Godot version

4.0 9f68d06

### System information

Windows 10 x64

### Issue description

When changing any property of tile source, e.g. name:
![image](https://user-images.githubusercontent.com/2223172/219977766-9babbd6c-cd75-41a0-a167-fe6da039d05e.png)
This error appears in the output:
```
UndoRedo history mismatch: expected 0, got 2.
Set name
```
It means that there is an undo action that starts with a global object and continues with a scene one.

Only happens when the TileSet is built-in and it makes the changes to the tileset being registered as global, i.e. not related to its scene (which results in history inconsistency after closing the scene).

I did some debugging and the action comes from inspector, which edits TileSetAtlasSourceEditor and then TileSetAtlasSource. I don't know what exactly triggers it; the properties should be only set on TileSetAtlasSource.

### Steps to reproduce

1. Add scene
2. Add tilemap
3. Add tileset (don't save it to a file)
4. Edit tileset
5. Add atlas source (e.g. drop icon.svg)
6. Change atlas name
7. Observe output

### Minimal reproduction project

N/A
tool_menu->add_item(TTR("Orphan Resource Explorer..."), TOOLS_ORPHAN_RESOURCES);
	project_menu->add_separator();
	project_menu->add_shortcut(ED_SHORTCUT("editor/reload_current_project", TTR("Reload Current Project")), RELOAD_CURRENT_PROJECT);
	ED_SHORTCUT_AND_COMMAND("editor/quit_to_project_list", TTR("Quit to Project List"), KeyModifierMask::CTRL + KeyModifierMask::SHIFT + Key::Q);
	ED_SHORTCUT_OVERRIDE("editor/quit_to_project_list", "macos", KeyModifierMask::META + KeyModifierMask::CTRL + KeyModifierMask::ALT + Key::Q);
	project_menu->add_shortcut(ED_GET_SHORTCUT("editor/quit_to_project_list"), RUN_PROJECT_MANAGER, true);
	
	HBoxContainer *left_spacer = memnew(HBoxContainer);
	left_spacer->set_mouse_filter(Control::MOUSE_FILTER_PASS);
	left_spacer->set_h_size_flags(Control::SIZE_EXPAND_FILL);
	title_bar->add_child(left_spacer);
	if (can_expand && global_menu) {
		project_title = memnew(Label);
		project_title->add_theme_font_override("font", gui_base->get_theme_font(SNAME("bold"), SNAME("EditorFonts")));
		project_title->add_theme_font_size_override("font_size", gui_base->get_theme_font_size(SNAME("bold_size"), SNAME("EditorFonts")));
		project_title->set_focus_mode(Control::FOCUS_NONE);
		project_title->set_text_overrun_behavior(TextServer::OVERRUN_TRIM_ELLIPSIS);
		project_title->set_vertical_alignment(VERTICAL_ALIGNMENT_CENTER);
		project_title->set_h_size_flags(Control::SIZE_EXPAND_FILL);
		project_title->set_mouse_filter(Control::MOUSE_FILTER_PASS);
		left_spacer->add_child(project_title);
	}
	main_editor_button_hb = memnew(HBoxContainer);
	title_bar->add_child(main_editor_button_hb);
	
	debug_menu = memnew(PopupMenu);
	debug_menu->set_name(TTR("Debug"));
	main_menu->add_child(debug_menu);
	settings_menu = memnew(PopupMenu);
	settings_menu->set_name(TTR("Editor"));