Ander
Uploading new CNA-driver VCFs
f6f8f59
##fileformat=VCFv4.2
##fileDate=20241012
##source=OncoGAN-v0.1
##reference=hg19
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=MS,Number=A,Type=String,Description="Mutation type or mutational signature assigned to each mutation. Available options are: SBS (single base substitution signature), DNP (dinucleotide polymorphism), TNP (trinucleotide polymorphism), DEL (deletion), INS (insertion), driver* (driver mutation sampled from real donors)">
#CHROM POS ID REF ALT QUAL FILTER INFO
1 52066960 sim38 G T . . AF=0.09;MS=SBS5
1 73162743 sim38 T C . . AF=0.31;MS=SBS5
1 79844793 sim38 T TG . . AF=0.24;MS=INS
1 119858923 sim38 C T . . AF=0.33;MS=SBS1
1 173186243 sim38 C G . . AF=0.17;MS=SBS5
1 184926294 sim38 G A . . AF=0.31;MS=SBS5
2 545237 sim38 A T . . AF=0.23;MS=SBS1
2 36123974 sim38 G T . . AF=0.09;MS=SBS5
2 73945678 sim38 G C . . AF=0.34;MS=SBS5
2 84076077 sim38 C A . . AF=0.16;MS=SBS5
2 150886731 sim38 T G . . AF=0.12;MS=SBS5
2 173843433 sim38 C T . . AF=0.09;MS=SBS5
2 178931960 sim38 C A . . AF=0.2;MS=SBS5
2 197211374 sim38 TCT T . . AF=0.08;MS=DEL
3 11724805 sim38 G T . . AF=0.19;MS=SBS5
3 12383571 sim38 C T . . AF=0.1;MS=SBS1
3 24055792 sim38 G T . . AF=0.06;MS=SBS5
3 67804428 sim38 G T . . AF=0.2;MS=SBS5
3 108015652 sim38 GCTGATATA G . . AF=0.26;MS=DEL
4 11001302 sim38 C G . . AF=0.46;MS=SBS5
4 12501061 sim38 A T . . AF=0.42;MS=SBS1
4 68867308 sim38 G A . . AF=0.15;MS=SBS5
4 106367004 sim38 A G . . AF=0.46;MS=SBS5
4 161974532 sim38 A T . . AF=0.17;MS=SBS5
4 188239702 sim38 A G . . AF=0.36;MS=SBS5
5 134416188 sim38 C T . . AF=0.08;MS=SBS5
5 137515658 sim38 G A . . AF=0.45;MS=SBS5
5 161655635 sim38 G A . . AF=0.33;MS=SBS1
5 162957661 sim38 G T . . AF=0.39;MS=SBS5
6 11436996 sim38 A T . . AF=0.19;MS=SBS5
6 25548002 sim38 C T . . AF=0.21;MS=SBS1
6 36170244 sim38 T C . . AF=0.09;MS=SBS5
6 56184812 sim38 A T . . AF=0.28;MS=SBS5
6 63513721 sim38 T C . . AF=0.22;MS=SBS5
6 82248650 sim38 C A . . AF=0.49;MS=SBS5
6 102391909 sim38 G A . . AF=0.51;MS=SBS1
6 140015780 sim38 T A . . AF=0.05;MS=SBS5
6 165195552 sim38 G A . . AF=0.51;MS=SBS5
7 19723561 sim38 C T . . AF=0.1;MS=SBS1
7 62010067 sim38 C T . . AF=0.52;MS=SBS1
7 78036548 sim38 T C . . AF=0.16;MS=SBS5
7 96701979 sim38 C T . . AF=0.3;MS=SBS1
7 109617250 sim38 G A . . AF=0.08;MS=SBS1
7 109618315 sim38 G A . . AF=0.56;MS=SBS1
7 109955365 sim38 A G . . AF=0.38;MS=SBS5
7 131328649 sim38 AG A . . AF=0.45;MS=DEL
7 140500287 sim38 AG TT . . AF=0.03;MS=driver_BRAF_Intron
8 58374629 sim38 G A . . AF=0.37;MS=SBS5
8 72237137 sim38 C T . . AF=0.08;MS=SBS5
8 94775802 sim38 G T . . AF=0.08;MS=SBS5
8 101355107 sim38 C T . . AF=0.32;MS=SBS5
8 112205072 sim38 C T . . AF=0.53;MS=SBS1
8 137148190 sim38 G A . . AF=0.17;MS=SBS5
9 31998156 sim38 G A . . AF=0.1;MS=SBS5
9 123357419 sim38 ATTTTTTGTAGTAG A . . AF=0.13;MS=DEL
10 2551672 sim38 C A . . AF=0.47;MS=SBS5
10 19216692 sim38 T C . . AF=0.13;MS=SBS5
10 55528641 sim38 A G . . AF=0.06;MS=SBS5
10 74210134 sim38 G A . . AF=0.34;MS=SBS1
10 98781733 sim38 C T . . AF=0.45;MS=SBS5
10 132739013 sim38 A T . . AF=0.42;MS=SBS5
11 81543423 sim38 C T . . AF=0.1;MS=SBS1
12 8709488 sim38 C T . . AF=0.08;MS=SBS5
12 11025017 sim38 T C . . AF=0.15;MS=SBS5
12 14620325 sim38 C CA . . AF=0.33;MS=INS
12 15878848 sim38 A G . . AF=0.46;MS=SBS5
12 17961164 sim38 C A . . AF=0.13;MS=SBS1
12 62338412 sim38 C T . . AF=0.35;MS=SBS1
12 72958317 sim38 A T . . AF=0.26;MS=SBS1
12 73375288 sim38 A T . . AF=0.11;MS=SBS5
12 74321238 sim38 G A . . AF=0.27;MS=SBS1
12 84326228 sim38 C T . . AF=0.32;MS=SBS1
12 130220387 sim38 TTATCCA T . . AF=0.35;MS=DEL
13 19454671 sim38 C T . . AF=0.14;MS=SBS1
13 34552580 sim38 G A . . AF=0.35;MS=SBS1
13 64480219 sim38 C T . . AF=0.38;MS=SBS1
14 26967551 sim38 C T . . AF=0.36;MS=SBS1
14 105150719 sim38 G A . . AF=0.48;MS=SBS5
15 23043112 sim38 C T . . AF=0.38;MS=SBS1
15 30715762 sim38 G A . . AF=0.37;MS=SBS1
15 84922258 sim38 G A . . AF=0.3;MS=SBS1
15 90176390 sim38 GAC G . . AF=0.11;MS=DEL
16 33486798 sim38 G A . . AF=0.1;MS=SBS5
16 66458648 sim38 G A . . AF=0.05;MS=SBS5
17 73627846 sim38 C T . . AF=0.43;MS=SBS1
18 36621760 sim38 ATAGT A . . AF=0.09;MS=DEL
18 48325925 sim38 C T . . AF=0.44;MS=SBS1
19 28472210 sim38 C A . . AF=0.09;MS=SBS5
20 9619553 sim38 G A . . AF=0.51;MS=SBS1
20 15227387 sim38 A G . . AF=0.14;MS=SBS1
22 39714289 sim38 G A . . AF=0.12;MS=SBS1
X 16336740 sim38 C CC . . AF=0.4;MS=INS
X 24448908 sim38 C T . . AF=0.8;MS=SBS1
X 34623741 sim38 G C . . AF=0.09;MS=SBS5
X 37307177 sim38 G A . . AF=0.15;MS=SBS1
X 77199147 sim38 G C . . AF=0.31;MS=SBS5
X 78684112 sim38 G A . . AF=0.1;MS=SBS1
X 133059196 sim38 A T . . AF=0.39;MS=SBS5