Ander
Uploading new CNA-driver VCFs
f6f8f59
##fileformat=VCFv4.2
##fileDate=20241012
##source=OncoGAN-v0.1
##reference=hg19
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=MS,Number=A,Type=String,Description="Mutation type or mutational signature assigned to each mutation. Available options are: SBS (single base substitution signature), DNP (dinucleotide polymorphism), TNP (trinucleotide polymorphism), DEL (deletion), INS (insertion), driver* (driver mutation sampled from real donors)">
#CHROM POS ID REF ALT QUAL FILTER INFO
1 5039026 sim53 C A . . AF=0.15;MS=SBS1
1 66660086 sim53 A G . . AF=0.31;MS=SBS5
1 80917827 sim53 G A . . AF=0.44;MS=SBS5
1 82457924 sim53 T G . . AF=0.24;MS=SBS5
1 102755672 sim53 GC G . . AF=0.18;MS=DEL
1 105494358 sim53 A T . . AF=0.2;MS=SBS1
1 107873177 sim53 T C . . AF=0.22;MS=SBS5
1 186548141 sim53 G A . . AF=0.28;MS=SBS1
1 247358368 sim53 G A . . AF=0.1;MS=SBS1
2 7034997 sim53 G T . . AF=0.31;MS=SBS5
2 16545685 sim53 T A . . AF=0.16;MS=SBS5
2 32737465 sim53 G T . . AF=0.51;MS=SBS5
2 33422809 sim53 G T . . AF=0.12;MS=SBS5
2 39491669 sim53 C T . . AF=0.08;MS=SBS5
2 61376456 sim53 A G . . AF=0.29;MS=SBS5
2 82449356 sim53 G A . . AF=0.13;MS=SBS1
2 82696284 sim53 C T . . AF=0.36;MS=SBS5
2 138865537 sim53 GC G . . AF=0.25;MS=DEL
2 150630336 sim53 AA A . . AF=0.08;MS=DEL
2 238951120 sim53 G A . . AF=0.11;MS=SBS5
3 74720375 sim53 C G . . AF=0.08;MS=SBS5
3 76525609 sim53 C G . . AF=0.22;MS=SBS5
3 104434967 sim53 GT G . . AF=0.15;MS=DEL
3 115055668 sim53 C T . . AF=0.23;MS=SBS1
3 165485330 sim53 A G . . AF=0.11;MS=SBS5
3 170834214 sim53 G A . . AF=0.05;MS=SBS5
4 66768546 sim53 A G . . AF=0.11;MS=SBS5
4 82412151 sim53 A G . . AF=0.62;MS=SBS1
4 97944008 sim53 C G . . AF=0.39;MS=SBS1
4 104512628 sim53 G A . . AF=0.26;MS=SBS1
4 119664005 sim53 G A . . AF=0.08;MS=SBS5
4 123592016 sim53 AA A . . AF=0.32;MS=DEL
4 137469063 sim53 T C . . AF=0.44;MS=SBS1
4 146815595 sim53 A G . . AF=0.36;MS=SBS5
4 174369546 sim53 C T . . AF=0.19;MS=SBS1
5 38268976 sim53 G A . . AF=0.32;MS=SBS5
5 52725517 sim53 G T . . AF=0.09;MS=SBS5
5 59447802 sim53 A T . . AF=0.34;MS=SBS5
5 82666016 sim53 A C . . AF=0.26;MS=SBS5
5 108125911 sim53 G T . . AF=0.19;MS=SBS5
5 143953406 sim53 A G . . AF=0.4;MS=SBS5
5 148405238 sim53 T C . . AF=0.59;MS=SBS5
5 161025345 sim53 C T . . AF=0.23;MS=SBS1
5 169113589 sim53 G A . . AF=0.16;MS=SBS5
5 171203063 sim53 C T . . AF=0.36;MS=SBS1
6 11693051 sim53 C T . . AF=0.19;MS=SBS1
6 25402531 sim53 G A . . AF=0.22;MS=SBS1
6 79537562 sim53 G A . . AF=0.08;MS=SBS5
6 84738808 sim53 T A . . AF=0.09;MS=SBS5
6 113439217 sim53 G T . . AF=0.34;MS=SBS5
6 119780459 sim53 T C . . AF=0.28;MS=SBS1
7 53467132 sim53 G A . . AF=0.38;MS=SBS1
7 97353546 sim53 C A . . AF=0.17;MS=SBS5
7 120454988 sim53 G A . . AF=0.29;MS=SBS5
7 140535559 sim53 T C . . AF=0.1;MS=driver_BRAF_Intron
7 143304962 sim53 T A . . AF=0.22;MS=SBS5
8 38272308 sim53 T C . . AF=0.16;MS=driver_FGFR1_Coding
8 38274849 sim53 G T . . AF=0.16;MS=driver_FGFR1_Coding
8 47272453 sim53 AA A . . AF=0.15;MS=DEL
8 58060378 sim53 CC C . . AF=0.11;MS=DEL
8 67311328 sim53 T C . . AF=0.14;MS=SBS5
8 112671520 sim53 G A . . AF=0.62;MS=SBS1
8 128718253 sim53 C T . . AF=0.15;MS=SBS1
8 144265225 sim53 G A . . AF=0.14;MS=SBS1
9 28394836 sim53 G C . . AF=0.18;MS=SBS5
9 31064730 sim53 T C . . AF=0.13;MS=SBS5
9 31740902 sim53 T TC . . AF=0.22;MS=INS
9 32399197 sim53 T G . . AF=0.16;MS=SBS5
9 76768670 sim53 G T . . AF=0.21;MS=SBS5
9 131352704 sim53 C T . . AF=0.14;MS=SBS1
9 140902305 sim53 G A . . AF=0.15;MS=SBS1
10 8459761 sim53 T C . . AF=0.22;MS=SBS5
10 25027007 sim53 C G . . AF=0.19;MS=SBS5
10 111238681 sim53 G A . . AF=0.22;MS=SBS1
10 111527956 sim53 G A . . AF=0.14;MS=SBS1
10 112052512 sim53 C A . . AF=0.39;MS=SBS5
10 114417143 sim53 T C . . AF=0.06;MS=SBS5
10 119651496 sim53 G A . . AF=0.1;MS=SBS1
10 123635039 sim53 C T . . AF=0.52;MS=SBS1
11 9492604 sim53 G A . . AF=0.11;MS=SBS1
11 43872180 sim53 T C . . AF=0.11;MS=SBS1
11 114695376 sim53 C T . . AF=0.13;MS=SBS1
12 95288259 sim53 CTTATT C . . AF=0.32;MS=DEL
12 123708057 sim53 T C . . AF=0.22;MS=SBS5
13 21666376 sim53 T A . . AF=0.33;MS=SBS5
13 36372840 sim53 TT T . . AF=0.12;MS=DEL
13 45386892 sim53 G A . . AF=0.15;MS=SBS1
13 48459859 sim53 A T . . AF=0.11;MS=SBS1
13 55346814 sim53 A G . . AF=0.36;MS=SBS5
13 87494128 sim53 C G . . AF=0.05;MS=SBS5
13 97218910 sim53 AA A . . AF=0.41;MS=DEL
14 43355152 sim53 C A . . AF=0.27;MS=SBS5
14 43575627 sim53 G A . . AF=0.25;MS=SBS5
14 57110178 sim53 C T . . AF=0.43;MS=SBS5
14 84799051 sim53 C T . . AF=0.36;MS=SBS5
14 95677209 sim53 C T . . AF=0.24;MS=SBS1
15 36259607 sim53 C T . . AF=0.29;MS=SBS1
15 48113534 sim53 G A . . AF=0.25;MS=SBS1
15 51013326 sim53 G A . . AF=0.14;MS=SBS5
15 53739153 sim53 C T . . AF=0.21;MS=SBS5
15 56711790 sim53 G C . . AF=0.11;MS=SBS5
15 58657979 sim53 T C . . AF=0.09;MS=SBS5
15 59400417 sim53 G A . . AF=0.13;MS=SBS1
15 95828680 sim53 A G . . AF=0.1;MS=SBS5
16 33280592 sim53 T C . . AF=0.15;MS=SBS5
16 89088923 sim53 G A . . AF=0.2;MS=SBS1
18 36983042 sim53 G GC . . AF=0.31;MS=INS
18 71306901 sim53 G A . . AF=0.05;MS=SBS1
19 6605445 sim53 C T . . AF=0.26;MS=SBS1
19 32183657 sim53 C T . . AF=0.17;MS=SBS1
19 34913495 sim53 C T . . AF=0.25;MS=SBS1
21 24425537 sim53 C T . . AF=0.16;MS=SBS1
21 24905303 sim53 C A . . AF=0.31;MS=SBS5
X 125324870 sim53 G A . . AF=0.26;MS=SBS1
X 126402816 sim53 T A . . AF=0.08;MS=SBS5
X 130331205 sim53 G T . . AF=0.13;MS=SBS1
Y 9606231 sim53 T G . . AF=0.17;MS=SBS5
Y 17853804 sim53 C G . . AF=0.27;MS=SBS5