Upload 4 files
Browse files- .gitattributes +2 -0
- raw/QM9_README +30 -0
- raw/gdb9.sdf +3 -0
- raw/gdb9.sdf.csv +3 -0
- raw/uncharacterized.txt +0 -0
.gitattributes
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@@ -57,3 +57,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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raw/gdb9.sdf filter=lfs diff=lfs merge=lfs -text
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raw/gdb9.sdf.csv filter=lfs diff=lfs merge=lfs -text
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raw/QM9_README
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QM9 is a comprehensive dataset that provides geometric, energetic, electronic and thermodynamic properties for a subset of GDB-17 database, comprising 134 thousand stable organic molecules with up to 9 heavy atoms. All moleucles are modeled using density functional theory (B3LYP/6-31G(2df,p) based DFT).
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The data files:
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qm9.sdf: molecular structures
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qm9.sdf.csv: tables for molecular properties
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"mol_id" - Molecule ID (gdb9 index) mapping to the .sdf file
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"A" - Rotational constant (unit: GHz)
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"B" - Rotational constant (unit: GHz)
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"C" - Rotational constant (unit: GHz)
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"mu" - Dipole moment (unit: D)
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"alpha" - Isotropic polarizability (unit: Bohr^3)
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"homo" - Highest occupied molecular orbital energy (unit: Hartree)
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"lumo" - Lowest unoccupied molecular orbital energy (unit: Hartree)
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"gap" - Gap between HOMO and LUMO (unit: Hartree)
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"r2" - Electronic spatial extent (unit: Bohr^2)
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"zpve" - Zero point vibrational energy (unit: Hartree)
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"u0" - Internal energy at 0K (unit: Hartree)
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"u298" - Internal energy at 298.15K (unit: Hartree)
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"h298" - Enthalpy at 298.15K (unit: Hartree)
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"g298" - Free energy at 298.15K (unit: Hartree)
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"cv" - Heat capavity at 298.15K (unit: cal/(mol*K))
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"u0_atom" - Atomization energy at 0K (unit: kcal/mol)
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"u298_atom" - Atomization energy at 298.15K (unit: kcal/mol)
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"h298_atom" - Atomization enthalpy at 298.15K (unit: kcal/mol)
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"g298_atom" - Atomization free energy at 298.15K (unit: kcal/mol)
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*"u0_atom" ~ "g298_atom" are calculated from the differences between "u0" ~ "g298" and sum of reference energies of all atoms in the molecules, as given in https://figshare.com/articles/Atomref%3A_Reference_thermochemical_energies_of_H%2C_C%2C_N%2C_O%2C_F_atoms./1057643
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Reference:
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Blum, Lorenz C., and Jean-Louis Reymond. "970 million druglike small molecules for virtual screening in the chemical universe database GDB-13." Journal of the American Chemical Society 131.25 (2009): 8732-8733.
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Ramakrishnan, Raghunathan, et al. "Quantum chemistry structures and properties of 134 kilo molecules." Scientific data 1 (2014): 140022.
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raw/gdb9.sdf
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version https://git-lfs.github.com/spec/v1
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oid sha256:98c4e97d50ac549b8c9f0b2114b348a9a944718e17e50d9a724b729f1deaa28e
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size 235434378
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raw/gdb9.sdf.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:73a67793e3cfa9660f001278bd019c143f57e4785db537a01811cf2ce72aa7eb
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size 27685401
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raw/uncharacterized.txt
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