payload: {"action":"created","issue":{"url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/2","repository_url":"https://api.github.com/repos/IvoryC/MyScript_module","labels_url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/2/comments","events_url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/2/events","html_url":"https://github.com/IvoryC/MyScript_module/issues/2","id":449896904,"node_id":"MDU6SXNzdWU0NDk4OTY5MDQ=","number":2,"title":"Verify the launch option","user":{"login":"IvoryC","id":8933011,"node_id":"MDQ6VXNlcjg5MzMwMTE=","avatar_url":"https://avatars3.githubusercontent.com/u/8933011?v=4","gravatar_id":"","url":"https://api.github.com/users/IvoryC","html_url":"https://github.com/IvoryC","followers_url":"https://api.github.com/users/IvoryC/followers","following_url":"https://api.github.com/users/IvoryC/following{/other_user}","gists_url":"https://api.github.com/users/IvoryC/gists{/gist_id}","starred_url":"https://api.github.com/users/IvoryC/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/IvoryC/subscriptions","organizations_url":"https://api.github.com/users/IvoryC/orgs","repos_url":"https://api.github.com/users/IvoryC/repos","events_url":"https://api.github.com/users/IvoryC/events{/privacy}","received_events_url":"https://api.github.com/users/IvoryC/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2019-05-29T16:08:55Z","updated_at":"2019-06-07T12:21:45Z","closed_at":null,"author_association":"OWNER","body":"The config option:\r\nmyScript.launcher=\r\n\r\nis intended for things like \"python\", or \"Rscript\".  Default is none (ie, bash)\r\nIt up to the user to make sure that the launch command is available in the running environment (cluster module, or local install, or docker image, etc).\r\n\r\nVerify that this is working for \"python\" and \"Rscript\" and \"Rscript -knit\" (or whatever the arg is for knitting a markdown from the command line).  Make corresponding demos, similar to the \"someUserScript.sh\" example."},"comment":{"url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/comments/499863955","html_url":"https://github.com/IvoryC/MyScript_module/issues/2#issuecomment-499863955","issue_url":"https://api.github.com/repos/IvoryC/MyScript_module/issues/2","id":499863955,"node_id":"MDEyOklzc3VlQ29tbWVudDQ5OTg2Mzk1NQ==","user":{"login":"IvoryC","id":8933011,"node_id":"MDQ6VXNlcjg5MzMwMTE=","avatar_url":"https://avatars3.githubusercontent.com/u/8933011?v=4","gravatar_id":"","url":"https://api.github.com/users/IvoryC","html_url":"https://github.com/IvoryC","followers_url":"https://api.github.com/users/IvoryC/followers","following_url":"https://api.github.com/users/IvoryC/following{/other_user}","gists_url":"https://api.github.com/users/IvoryC/gists{/gist_id}","starred_url":"https://api.github.com/users/IvoryC/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/IvoryC/subscriptions","organizations_url":"https://api.github.com/users/IvoryC/orgs","repos_url":"https://api.github.com/users/IvoryC/repos","events_url":"https://api.github.com/users/IvoryC/events{/privacy}","received_events_url":"https://api.github.com/users/IvoryC/received_events","type":"User","site_admin":false},"created_at":"2019-06-07T12:21:45Z","updated_at":"2019-06-07T12:21:45Z","author_association":"OWNER","body":"I made a demo that uses Rscript and one that uses an Rmarkdown.\r\nThe launcher works BUT I was surprised that Rscript was not on the path when I ran this through BioLockJ. I had to give the path to the Rscript executable."}}
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