payload: {"action":"created","issue":{"url":"https://api.github.com/repos/hartwigmedical/scripts/issues/4","repository_url":"https://api.github.com/repos/hartwigmedical/scripts","labels_url":"https://api.github.com/repos/hartwigmedical/scripts/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/hartwigmedical/scripts/issues/4/comments","events_url":"https://api.github.com/repos/hartwigmedical/scripts/issues/4/events","html_url":"https://github.com/hartwigmedical/scripts/issues/4","id":534001893,"node_id":"MDU6SXNzdWU1MzQwMDE4OTM=","number":4,"title":"Recreating plots pan-cancer paper","user":{"login":"willemdek11","id":40759303,"node_id":"MDQ6VXNlcjQwNzU5MzAz","avatar_url":"https://avatars3.githubusercontent.com/u/40759303?v=4","gravatar_id":"","url":"https://api.github.com/users/willemdek11","html_url":"https://github.com/willemdek11","followers_url":"https://api.github.com/users/willemdek11/followers","following_url":"https://api.github.com/users/willemdek11/following{/other_user}","gists_url":"https://api.github.com/users/willemdek11/gists{/gist_id}","starred_url":"https://api.github.com/users/willemdek11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/willemdek11/subscriptions","organizations_url":"https://api.github.com/users/willemdek11/orgs","repos_url":"https://api.github.com/users/willemdek11/repos","events_url":"https://api.github.com/users/willemdek11/events{/privacy}","received_events_url":"https://api.github.com/users/willemdek11/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2019-12-06T13:54:46Z","updated_at":"2019-12-18T22:14:10Z","closed_at":"2019-12-18T22:14:10Z","author_association":"NONE","body":"Hey,\r\n\r\nI would like to create the same plots that are shown in the paper, but could I use the scripts without connection to your database?\r\n\r\nHow would I create the .Rdata files that you're using, or could you give me some indication what they should look like?\r\n\r\nThanks,\r\nWillem"},"comment":{"url":"https://api.github.com/repos/hartwigmedical/scripts/issues/comments/567236446","html_url":"https://github.com/hartwigmedical/scripts/issues/4#issuecomment-567236446","issue_url":"https://api.github.com/repos/hartwigmedical/scripts/issues/4","id":567236446,"node_id":"MDEyOklzc3VlQ29tbWVudDU2NzIzNjQ0Ng==","user":{"login":"jonbaber","id":27909546,"node_id":"MDQ6VXNlcjI3OTA5NTQ2","avatar_url":"https://avatars0.githubusercontent.com/u/27909546?v=4","gravatar_id":"","url":"https://api.github.com/users/jonbaber","html_url":"https://github.com/jonbaber","followers_url":"https://api.github.com/users/jonbaber/followers","following_url":"https://api.github.com/users/jonbaber/following{/other_user}","gists_url":"https://api.github.com/users/jonbaber/gists{/gist_id}","starred_url":"https://api.github.com/users/jonbaber/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jonbaber/subscriptions","organizations_url":"https://api.github.com/users/jonbaber/orgs","repos_url":"https://api.github.com/users/jonbaber/repos","events_url":"https://api.github.com/users/jonbaber/events{/privacy}","received_events_url":"https://api.github.com/users/jonbaber/received_events","type":"User","site_admin":false},"created_at":"2019-12-18T22:14:10Z","updated_at":"2019-12-18T22:14:10Z","author_association":"CONTRIBUTOR","body":"My apologies for the late reply. The scripts are all contained in the [pancancerpaper](https://github.com/hartwigmedical/scripts/tree/master/pancancerpaper) directory. The cohort.R file is used to generate the .RData files the figures are based on and they typically match our [database schema](https://github.com/hartwigmedical/hmftools/blob/master/patient-db/src/main/resources/generate_database.sql).\r\n\r\n\r\n\r\n"}}
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